Tbra001327.1
Basic Information
- Insect
- Trichogramma brassicae
- Gene Symbol
- -
- Assembly
- GCA_902806795.1
- Location
- CADCXV010000809.1:290673-347284[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 32 0.63 27 5.4 1.4 5 23 89 108 80 108 0.91 2 32 0.00093 0.04 14.3 1.1 1 23 114 137 114 137 0.96 3 32 2.5e-05 0.0011 19.3 1.8 1 23 157 180 157 180 0.96 4 32 7.4e-06 0.00031 20.9 0.8 1 23 215 238 215 238 0.97 5 32 7.1e-06 0.0003 21.0 0.6 1 23 244 267 244 267 0.96 6 32 3.3e-06 0.00014 22.0 4.2 1 23 273 296 273 296 0.97 7 32 1.1e-05 0.00046 20.4 0.5 1 23 302 325 302 325 0.96 8 32 3.3e-06 0.00014 22.0 4.2 1 23 331 354 331 354 0.97 9 32 0.00016 0.0066 16.8 5.0 1 23 360 383 360 383 0.98 10 32 2e-05 0.00084 19.6 1.0 1 23 389 412 389 412 0.98 11 32 9.2e-05 0.0039 17.5 0.9 1 23 418 441 418 441 0.97 12 32 0.00029 0.012 15.9 1.7 1 23 447 470 447 470 0.97 13 32 4.5e-05 0.0019 18.4 0.4 1 23 476 499 476 499 0.97 14 32 1.3e-05 0.00054 20.2 0.4 1 23 505 528 505 528 0.96 15 32 0.016 0.67 10.4 0.8 1 23 534 557 534 557 0.95 16 32 0.0011 0.049 14.0 1.7 1 23 563 586 563 586 0.97 17 32 0.088 3.7 8.1 0.5 1 16 592 607 592 609 0.91 18 32 4.7e-05 0.002 18.4 1.1 1 23 615 638 615 638 0.97 19 32 4.1e-05 0.0017 18.6 0.8 1 23 644 667 644 667 0.98 20 32 0.024 1 9.9 2.4 1 23 673 696 673 696 0.96 21 32 0.00021 0.0089 16.3 0.4 1 23 702 725 702 725 0.96 22 32 0.0019 0.082 13.3 4.7 1 23 750 773 750 773 0.97 23 32 0.00011 0.0046 17.3 0.8 1 23 779 802 779 802 0.98 24 32 0.00021 0.0089 16.4 1.1 1 23 808 831 808 831 0.97 25 32 0.00029 0.012 15.9 1.7 1 23 837 860 837 860 0.97 26 32 0.00072 0.031 14.7 3.1 1 23 875 898 875 898 0.97 27 32 6.7e-06 0.00028 21.1 0.8 1 23 904 927 904 927 0.96 28 32 0.0044 0.19 12.2 3.3 1 23 933 956 933 956 0.97 29 32 0.0022 0.093 13.2 1.2 3 23 964 985 962 985 0.96 30 32 0.00081 0.034 14.5 1.4 1 23 988 1011 988 1011 0.95 31 32 0.0035 0.15 12.5 0.3 1 23 1041 1064 1041 1064 0.96 32 32 4.6e-06 0.00019 21.6 3.2 1 23 1070 1093 1070 1093 0.97
Sequence Information
- Coding Sequence
- atgccgaaaccccacgtgctgcggtgtgttagtgtggcgttgctgtacacctatagccatGTTGAACGGATGCTGCTACGCTGGCTGCTATATGCTCGACTGCAAGAGACTGATGCTTTTCTCCCTTGTTGCCTCTCAGCCTCAGCCTCAGCCTCCTCCTACTCCCAGGCTCTCCGACTGTGTGTTGCTAGCAGCTCGGCTGCTACTGCCCCCgaTTTCGACCAATTGgtttttttgtgttgtaaaaagtacattttttcaaaaaagtgcgccaagatATTTGGAAATAGACGGGGTCTGCTCTTACACATAAAAACGATACACTacgatcgcaaagattacgcatgtgaccagtgtgagaagaaatttgtgaaaaacaCGACTTTATTTatgcaccaaaaattagtgcaTAAAAATCGAGAAGATCtcacgtgcaacaagtgcacagtacacgacgatcgcaaagattacgcatgtgaccaATGTggtaagaaatttggatataaaaacaattttagaagacaccaaaaattagtgcacgaaggtcaaaaagattacacatgcaaCAGAATCGAGAAGAACTTTGGCCAATGGGAGAATCTGCTTTTGAACCAAAAGACAGTAgacgaaggtcgcagagatttcgcatgtgatgagtgcaagaagaaattcgTATCGCTACTAAATTTGACTAGACACCTAAGaacagtgcacgaaggtcgaaaagatttcgcatgcgacaggtgtgagaaaaaatttgaacgaaaatcgaatttgctcatccaccaaaggatagtacatgaaggtcacaaagattacgcCTGTGACAAATGtgggaaaaaattcggacataaATCTAATTTGTTCAACCACCAAAAAACAAgacatgaaggtcgaaaagatttcgcatgcgacaggtgtgaaaaaaattttgaacgaaaatcgaatttgctcatccaccaaaggatagtacatgaaggtcacaaagattacgcCTGTGACAAATGtgggaaaaaattcggacataaATCTAATTTGTTCAACCACCAAAAAACAAgacatgaaggtcgaaaagatttcacCTGCAACAAGTGTCAAAAAAAGTTCGGGcgcaaattttatttgttcacccaccaaaagacggtgcacgaaggtcggaaagattacgaatgcaaTAAGTGCCCGAAGAAATTCGCACTCAATACGTATTTGCTCAACCACCAaaggacaatacacgaaggtcggaaagattttgcatgcgacaaatgcggtaagaaatttggactaaaagtgaatttgctcaagcacaaaaaaacagtccacgagggcCTCAAAAGTTACGCATGTGAcagatgcgaaaagaaattcggacaaaaaccacatttgctctcacaccaaaagacagttcatgaaggtcaaaaagattacgcatgtaatcaatgcgacaagaaatttggaataaaatcaaatttacttttgcaccaaaggatagtacacgaaggtcacaaagatttcgcttgcgataagtgcgacaagaaatttggaagacTAATAAATTTGACTAGACATCAAatgatagtacacgaaggtcgaaaagatttcgcatgtgacaagtgtgagcataaatttggactaaaatcaaatttagaCGTACATCAAACTATAGTACACGggggttgcaaagatttcgcatgcgataaatgTGAGAGGAAGTTTGGACTCAAAGCACATTTGCTccaacaccaaaagacagtacatgaaggtcgcaaagattacgcatgcgacaagtgcgaaaaaaaattcggacaaaagTCAAATTGGCtccacgagggtcgcaaagattttgcatgtgacaagtgcgagaagaaattcggacaaaaatcaaCTTTGCTCACCCATCAAAAAATggttcacgaaggtcggaaagattacccGTGCGACCGGTGCAAGAggaaatttgcacaaaaaggAGATTTTGCCAGACACCttaagacagtccatgaaggtcgcaaagattttgcatgtaacAAGTGTGATCAGAAATTGGGACACAAATTCAGTTTGATCCAGCATCAGAAATACATCCACCAAGGTcttaaagatttcgcatgtaatcaatgcgagaagaaatttggaataaaatcgaatttacttttgcaccaaaggatagttcacgaaggtcgcaaagattatgcatgtgaccaatgcgagaagaaatttgggatagtacatgaaggtcacaaagattacgcgtgtgacaaatgtgagaagaaattcggacataaatttaatttgctctACCACCGAAAAACAAGACATGAAGATCGAAAAGCTTACGAATGCAACAAGTGCCAGAAGAAATTCGCACTCAATACGTATCTGCTCATCCACCAaaggatagtacacgaaggtcggaaagattttgcatgcgacaaatgcgataagaaatttggactaaaagtgaatttgctcaagcacaaaaaaacaatacatgAAGGTctcaaagattacgcatgtgacagatgcgaaaagaaattcggacaaaaaccACATTTGCTCTCACACCAAAAGACGGTTCATGAAGGTCAAAGAGATTACATAGTACACGacgatcgcaaagattacgcatgtgaccaATGTCACAAGAAATTCGCTCTCAAAACGCATTTACTCATCCACCGaaggatagtacacgaaggtcgtaaagatttcgcttgcaacaaatgcgagaagaaatttacacgaaaatcgagtttgctcgAACATCAATTGGTAGcacatgaaggtcgaaaagattacgcatgtgacagttgcgaaaaaaaattcggatatAGATTTcatttgctctaccaccaaagAACATTACACGAGGGTCAAACAGATTACGGATGCGATAAATGTAAGAAGAAGTTTGTAAGCAAAACGTATTTGCTTTTACATAaaaagatagtccacgaagattacttatgtgagaagtgcgccaagagatttggaaataaacatagtttgttCGTGCATATAAAGATAATACACgatggtcgtaaagattacgcatgcgacaagcaCGAGGAGAAAAATTCGCATATGCTCTTAGACCAAAATACattctataaaaattattacttatgcgaaatgtgcgccaagagatttggaaatagaCGGGGTCTGCTCTTACACATAAAGACGATACACTacgatcgcaaagattacgcatgtgaccagtgtgagaagaaatttgggcatagaagcaatttgaaaagacaccaaaagacaatacacgaaggtcgcaaagatttcgcttgcagcaaCGTGCAGTACGTTACGTGTGtggcgtgtgctgctgctgcggcgcggAAGCATAAGTCAGGAGCGATTTTCTTTATAACCGCGCACGTACGCGTATAcccagcggtggcggcggcggcggcgcaccCACATactcacaaacacacacacacacacacacaccgagcgagagatgcAGCAAGCCAAGCCAAGAGTATAGGTAGAGCTTTGTTCGGGCTCCGCGTACACGGCGCAGCTCTCTCGTATACACGCGAGGTGACAacgtccagcagcagcacgccgCGCACAATGGAGTTATCGGTTAACGCGCCGCGCCGTCGTGTTTGTGCCCCCTCGAGATGTGTGCTGCGCCTCACCACTACTACTGGTATACATATAAGCTCAGGCTCTAGCAACTATTGTTATATAGCAGCAgtggaagcagcagcagcaacagcagcaccgagatcgATCACGTACGCGTGTACGCAAGCTCGTTGCGTTATAACTCTGTACCGGGCGATGACGCTACCGATGCTACCACCAAAAGTACAATGCCGCATGATACgtgttgcaggccaaaaaaatgaagttgaaactaaccatgtactcttcaagaacacaatgaaaaatgaaaatcctgaacatctcagcccccTAGGTCCAAccatcatggatctacaggggctcaaagttggattttcatgttctcagcttatcctgcttgttactctgcttttctgggttttacaCTGTGAGCATGAAGAGCCGAGCGAGCTGAGAGCacgtatactactactacgaggAGAAACTGCATATTattttttaattgaaggcgatagcatctatgatcaaaaaacgtttttttttaagaaaaaaggttcctggaacccagaggttccgtcTTGGGGAAACGTTTCTTTCGACGCCTTTTTTCgcaaccaccaccaccaccaccaccatcatcaCCTGGCAAACCAATCAGGCAGCAATGATTCCAAGGGACTGCTTTATTATATAGCCCgagaaaagcgagcgaaaaaaaaagggaggagGTTTTCGATCAGCATCACACCCTTGGCATTTaccaccccccacccccacccaagtcgtcgtcgtcgtcgtccggaCTGCAGTcggcatgcagcagcagcagcaagcagcaaGCGAAGCATAAAGCAAATCGACGAGATCGAGGAgctataa
- Protein Sequence
- MPKPHVLRCVSVALLYTYSHVERMLLRWLLYARLQETDAFLPCCLSASASASSYSQALRLCVASSSAATAPDFDQLVFLCCKKYIFSKKCAKIFGNRRGLLLHIKTIHYDRKDYACDQCEKKFVKNTTLFMHQKLVHKNREDLTCNKCTVHDDRKDYACDQCGKKFGYKNNFRRHQKLVHEGQKDYTCNRIEKNFGQWENLLLNQKTVDEGRRDFACDECKKKFVSLLNLTRHLRTVHEGRKDFACDRCEKKFERKSNLLIHQRIVHEGHKDYACDKCGKKFGHKSNLFNHQKTRHEGRKDFACDRCEKNFERKSNLLIHQRIVHEGHKDYACDKCGKKFGHKSNLFNHQKTRHEGRKDFTCNKCQKKFGRKFYLFTHQKTVHEGRKDYECNKCPKKFALNTYLLNHQRTIHEGRKDFACDKCGKKFGLKVNLLKHKKTVHEGLKSYACDRCEKKFGQKPHLLSHQKTVHEGQKDYACNQCDKKFGIKSNLLLHQRIVHEGHKDFACDKCDKKFGRLINLTRHQMIVHEGRKDFACDKCEHKFGLKSNLDVHQTIVHGGCKDFACDKCERKFGLKAHLLQHQKTVHEGRKDYACDKCEKKFGQKSNWLHEGRKDFACDKCEKKFGQKSTLLTHQKMVHEGRKDYPCDRCKRKFAQKGDFARHLKTVHEGRKDFACNKCDQKLGHKFSLIQHQKYIHQGLKDFACNQCEKKFGIKSNLLLHQRIVHEGRKDYACDQCEKKFGIVHEGHKDYACDKCEKKFGHKFNLLYHRKTRHEDRKAYECNKCQKKFALNTYLLIHQRIVHEGRKDFACDKCDKKFGLKVNLLKHKKTIHEGLKDYACDRCEKKFGQKPHLLSHQKTVHEGQRDYIVHDDRKDYACDQCHKKFALKTHLLIHRRIVHEGRKDFACNKCEKKFTRKSSLLEHQLVAHEGRKDYACDSCEKKFGYRFHLLYHQRTLHEGQTDYGCDKCKKKFVSKTYLLLHKKIVHEDYLCEKCAKRFGNKHSLFVHIKIIHDGRKDYACDKHEEKNSHMLLDQNTFYKNYYLCEMCAKRFGNRRGLLLHIKTIHYDRKDYACDQCEKKFGHRSNLKRHQKTIHEGRKDFACSNVQYVTCVACAAAAARKHKSGAIFFITAHVRVYPAVAAAAAHPHTHKHTHTHTHRARDAASQAKSIGRALFGLRVHGAALSYTREVTTSSSSTPRTMELSVNAPRRRVCAPSRCVLRLTTTTGIHISSGSSNYCYIAAVEAAAATAAPRSITYACTQARCVITLYRAMTLPMLPPKVQCRMIRVAGQKNEVETNHVLFKNTMKNENPEHLSPLGPTIMDLQGLKVGFSCSQLILLVTLLFWVLHCEHEEPSELRARILLLRGETAYYFLIEGDSIYDQKTFFFKKKGSWNPEVPSWGNVSFDAFFRNHHHHHHHHHLANQSGSNDSKGLLYYIAREKRAKKKGRRFSISITPLAFTTPHPHPSRRRRRPDCSRHAAAAASSKRSIKQIDEIEEL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -