Tbra000618.1
Basic Information
- Insect
- Trichogramma brassicae
- Gene Symbol
- -
- Assembly
- GCA_902806795.1
- Location
- CADCXV010001472.1:337170-342607[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 31 0.023 1 9.9 0.0 1 23 30 53 30 53 0.95 2 31 7.7e-05 0.0033 17.7 2.9 1 23 59 82 59 82 0.96 3 31 6.3e-05 0.0027 18.0 0.8 1 23 88 111 88 111 0.95 4 31 0.00032 0.014 15.8 3.0 2 23 118 140 117 140 0.96 5 31 0.0013 0.054 13.9 1.6 1 23 146 169 146 169 0.95 6 31 0.033 1.4 9.5 1.1 5 23 179 198 178 198 0.93 7 31 0.00013 0.0057 17.0 1.4 1 23 206 229 206 229 0.98 8 31 3e-05 0.0013 19.0 0.6 1 23 235 258 235 258 0.95 9 31 3.3e-06 0.00014 22.0 1.6 1 23 264 287 264 287 0.97 10 31 2.5e-05 0.0011 19.3 0.4 1 23 293 316 293 316 0.97 11 31 0.0031 0.13 12.7 0.5 1 23 322 345 322 345 0.97 12 31 9.7e-05 0.0041 17.4 2.5 1 23 351 374 351 374 0.97 13 31 9.3e-06 0.0004 20.6 2.0 1 23 380 403 380 403 0.97 14 31 3e-07 1.3e-05 25.3 0.9 1 23 409 432 409 432 0.98 15 31 0.00013 0.0053 17.1 0.2 1 23 438 461 438 461 0.97 16 31 0.00067 0.029 14.8 1.7 1 23 467 490 467 490 0.98 17 31 0.00068 0.029 14.8 2.6 3 23 498 519 496 519 0.96 18 31 1.8e-05 0.00075 19.7 0.7 1 23 525 548 525 548 0.97 19 31 1.5e-05 0.00062 20.0 4.0 1 23 554 577 554 577 0.98 20 31 1.6e-06 6.7e-05 23.0 0.6 1 23 583 606 583 606 0.97 21 31 0.0027 0.12 12.9 1.8 1 23 612 634 612 634 0.98 22 31 5.1e-06 0.00022 21.4 0.5 3 23 642 663 641 663 0.97 23 31 2.4e-05 0.001 19.3 0.6 1 23 669 692 669 692 0.97 24 31 0.051 2.2 8.9 6.3 2 23 702 726 699 726 0.93 25 31 8.9e-06 0.00038 20.7 0.8 1 23 732 755 732 755 0.95 26 31 3.2e-05 0.0014 18.9 2.9 2 23 762 784 761 784 0.96 27 31 0.0013 0.054 13.9 1.6 1 23 790 813 790 813 0.95 28 31 0.0072 0.31 11.5 1.3 5 23 823 842 822 842 0.96 29 31 0.00046 0.02 15.3 2.5 1 23 850 873 850 873 0.98 30 31 0.00012 0.005 17.1 5.5 1 23 879 902 879 902 0.98 31 31 4.1e-05 0.0018 18.6 1.1 1 23 908 931 908 931 0.97
Sequence Information
- Coding Sequence
- atggataaaagtgaaaagaaatcaGAGGAAGTTgtctcggaaaataatttaactgagcatgacattgttgttttggacgacaaaaaatatatttgtgatatttgtcaggaggcgtttgcactagaatcaagcatgatagcACATGGAGAAACAATtcacagtgaaaaaaaagattacatatgcgacaagtgcgaaaagaaatttgaatttcgaagtcatttgagtagacaccaaatatcagaacacaaaggccgccaagattttgcatgcgaccagtgcgagaagaaatttgtaaaacaatCGAGTTTacttacgcaccaaaaattagtccaCAAAGATCGAGAAGATTTGAAGTGCAATAAATGTgcgaagaaatttgaaaataaatcgacattactcaagcataaaaaaatattccacgaagttttcaaagattacttatgcgaaaagtgcgcaaaGAGATTTGGGAATAAACACAGTTTGCTCTTACATATAAAGAGTGTCCATAAGAGTCGTGAAGATGACTTGCGTAACAAGTGCAAGGAGAAATTcagaataaaatcaaatttccgTTCTCACCAAAAAGCAGGCCACATAGGtgaagatcgcaaagattacacatgcgacaaatgcgagaataaatttacacaaaaaaagagtttgcTCATCCATCAAAAGATAGTCCAccaaggtcggaaagattatgcgtgcgacaagtgcgagaaaaaatttggacaaaaagcaGATTTGTTTCGACACCAAAAAGCAGttcacgaaggttgcaaagattttgcatgcgacaattgcgggaagaaatttggacaaaaaacgcatttgcttgtccaccaaaggacagtgcatgaaggtcgtaaagatttcgcatgtgacgagtgcgagaagaaatttggaattaAATCTGATttattgaagcaccaaaggacagtccatgaaggtcgcaaagactacgcgtGTGGCAAGTGTGAacagaaatttggacagaGATGGACTATGATTCAGCACCGAAGGaccgtacacgaaggtcgcaaagattatgcatgtgagaAATGCGAGGAGAAATTCGGACATAACTCGCATTTGCTtgtccaccaaaagacagtacacgaaggtcgcaaagattatgcatgcgacgagtgcgagaaaaaattcgcacGAAAACTGCATTTGCTCCgtcatcaaaagacagtacacgaaggtcgcaaggattacaCATGCAAAatatgcgaaaagaaatttggggataaaagtaatttgataaagcatcaaaaaatagttcacgaaaatcgtaaagattatgcatgtgacatgTGTCAGAAGAAATTTGCAGGAAAATGGTACTTGCttgtacacataaaaacagttcatgaaggtcgcaaagattacacgtgcgacaagtgcgaaagtaaatttggacgaaaagggCATCTGCTCGTTCACCAAAGCACAGTACATGCAGATAGTGAATATTTAGCATGTaacaggtgcgagaagaaatttgggaagCGAAGTCATTTGCTCACCCACCAAAAGATGGTCCACGGAGGTTGGAAAAATTACGtgtgcgacaagtgtgagaagacaTTTGGACGTAAAGACGTTTTGACTAGGCACCGAGAAACGATACACgacggtcgcaaagactacgtaTGTGagaaatgcgaaaagaaatttggacgaaaatcacACTTGTTTTACCACCAAAGGTCAGTGCACGaggatcgcaaagattacgcgtgtgacaaatgtgagaagaaatttggacaaaagtcGGATTTGATAAGGCACCAAAATACTGTTCATGCGAGCcgtaaagatttcgtatgtgacaagtgcaaaaagaaatttgcctATAAATGGATTTTGTTTCAGCATCAAAagatacacgaaggtcgcaaagataacgcatgcgacaagtgcgaaaagaaatttgtaagaaaatcagatttgattatacaccaaaaaacagtccacgaaggtcgcaaggattacgtatgcgacaagtgtaaGAAgccatttggaaaaaaatcaagtttactcACCCACCTAAAgataatacacgaaggtcgcaaagataacgcatgcgacaagtgcgaaaagaaattttgcgaaaagaaatttgagttccgaagtcatttgagtagacaccaaatatcagtacacaaaatccgcaaagattttgcgtgcGATGAGTGtgacaagaaatttgtgaaaaaatcaagtctgcttacgcaccaaaaattagtccaCAAAGATCGAGAAGATTTGAAGTGCAATAAATGTccgaagaaatttgaaaataaatcgacattactcaagcataaaaaaatattccacgaagttttcaaagattacttatgcgaaaagtgcgcaaaGAGATTTGGGAATAAACACAGTTTGCTCTTACATATAAAGAGTGTCCATGAGAGTCGTGAAGATTACGTACGTGACAAGTGCAAGGAGAAATTcagaataaaatcaaatttccgTTCTCACCAAAAAACAGGCCACAAAGGTGAAGATCgtaaagattacacatgcgacaagtgcgagaataAATTTACACAAACGAAGAGTCTGCTCActcatcaaaagacagtccacgaagttcgaaaagattatgaatgcaagaattgtgagaagaaatttggacacaaaccGCATTTGCTGAAGCACCAAAAAACtttacacgaaggtcgcaaagatttcagatgcgacaagtgcgaacagGAATTCACACAAAAGAAGAGTTTGCTCATCCATCAAAAGATAGTCCAccaaggtcggaaagattacgcgtgcgacaacggCGCGATGATCGATTTTTCCGACGATCGAGCGTTGtatcatacgtatatagaccAGTTGGCAGTCGAGTACACAGACCACCCATTGATGACAACGAGCCGTACCGAGTTCGCATACGTGTTCGTGTACACGTATCTCGAGCAGCGCAAagtttttacttattatattCAGTACACCGCATCGATGATCGGCAGTTTATATGTAgcaaatacatacatatacccGCAACAGGATCGGTGGCAGTGCGGCGCGGAGTTCAAGTCCCTTTTCTTATGCCGTTCTGCGtga
- Protein Sequence
- MDKSEKKSEEVVSENNLTEHDIVVLDDKKYICDICQEAFALESSMIAHGETIHSEKKDYICDKCEKKFEFRSHLSRHQISEHKGRQDFACDQCEKKFVKQSSLLTHQKLVHKDREDLKCNKCAKKFENKSTLLKHKKIFHEVFKDYLCEKCAKRFGNKHSLLLHIKSVHKSREDDLRNKCKEKFRIKSNFRSHQKAGHIGEDRKDYTCDKCENKFTQKKSLLIHQKIVHQGRKDYACDKCEKKFGQKADLFRHQKAVHEGCKDFACDNCGKKFGQKTHLLVHQRTVHEGRKDFACDECEKKFGIKSDLLKHQRTVHEGRKDYACGKCEQKFGQRWTMIQHRRTVHEGRKDYACEKCEEKFGHNSHLLVHQKTVHEGRKDYACDECEKKFARKLHLLRHQKTVHEGRKDYTCKICEKKFGDKSNLIKHQKIVHENRKDYACDMCQKKFAGKWYLLVHIKTVHEGRKDYTCDKCESKFGRKGHLLVHQSTVHADSEYLACNRCEKKFGKRSHLLTHQKMVHGGWKNYVCDKCEKTFGRKDVLTRHRETIHDGRKDYVCEKCEKKFGRKSHLFYHQRSVHEDRKDYACDKCEKKFGQKSDLIRHQNTVHASRKDFVCDKCKKKFAYKWILFQHQKIHEGRKDNACDKCEKKFVRKSDLIIHQKTVHEGRKDYVCDKCKKPFGKKSSLLTHLKIIHEGRKDNACDKCEKKFCEKKFEFRSHLSRHQISVHKIRKDFACDECDKKFVKKSSLLTHQKLVHKDREDLKCNKCPKKFENKSTLLKHKKIFHEVFKDYLCEKCAKRFGNKHSLLLHIKSVHESREDYVRDKCKEKFRIKSNFRSHQKTGHKGEDRKDYTCDKCENKFTQTKSLLTHQKTVHEVRKDYECKNCEKKFGHKPHLLKHQKTLHEGRKDFRCDKCEQEFTQKKSLLIHQKIVHQGRKDYACDNGAMIDFSDDRALYHTYIDQLAVEYTDHPLMTTSRTEFAYVFVYTYLEQRKVFTYYIQYTASMIGSLYVANTYIYPQQDRWQCGAEFKSLFLCRSA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -