Tbra006082.1
Basic Information
- Insect
- Trichogramma brassicae
- Gene Symbol
- -
- Assembly
- GCA_902806795.1
- Location
- CADCXV010001329.1:6747-29735[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 34 2.6e-05 0.0011 19.2 1.5 1 23 113 136 113 136 0.97 2 34 6.7e-05 0.0029 17.9 2.8 1 23 142 165 142 165 0.97 3 34 0.00013 0.0056 17.0 4.0 1 23 171 194 171 194 0.96 4 34 0.024 1 9.9 0.6 1 23 200 223 200 223 0.97 5 34 1e-05 0.00043 20.5 1.3 1 23 229 252 229 252 0.96 6 34 7.8e-06 0.00033 20.9 2.6 1 23 258 281 258 281 0.98 7 34 0.00012 0.0051 17.1 0.5 1 23 287 310 287 310 0.97 8 34 5.6e-05 0.0024 18.1 0.8 1 23 328 351 328 351 0.93 9 34 9.6e-05 0.0041 17.4 2.5 1 23 357 380 357 380 0.97 10 34 4.2e-05 0.0018 18.6 2.0 1 23 386 409 386 409 0.98 11 34 2.2e-06 9.4e-05 22.6 1.0 1 23 415 438 415 438 0.97 12 34 0.0015 0.065 13.6 3.1 1 23 444 467 444 467 0.97 13 34 6.2e-05 0.0027 18.0 0.7 1 23 473 496 473 496 0.98 14 34 0.001 0.043 14.2 2.9 1 23 502 525 502 525 0.97 15 34 0.00015 0.0062 16.8 0.5 1 23 531 554 531 554 0.98 16 34 0.00013 0.0056 17.0 1.8 1 23 560 583 560 583 0.97 17 34 1.6e-06 7e-05 23.0 3.5 1 23 589 612 589 612 0.97 18 34 0.019 0.8 10.2 0.4 1 23 618 641 618 641 0.97 19 34 0.00039 0.017 15.5 2.3 1 23 680 703 680 703 0.96 20 34 2.5e-05 0.0011 19.3 1.0 1 23 709 732 709 732 0.97 21 34 0.00024 0.01 16.2 3.6 1 23 738 761 738 761 0.98 22 34 1e-05 0.00042 20.5 0.7 1 23 767 790 767 790 0.96 23 34 0.0064 0.27 11.7 0.4 1 23 796 819 796 819 0.97 24 34 2e-06 8.3e-05 22.7 2.0 1 23 838 861 838 861 0.96 25 34 0.0092 0.39 11.2 0.8 1 23 867 890 867 890 0.96 26 34 7.3e-06 0.00031 20.9 1.5 1 23 896 919 896 919 0.95 27 34 0.35 15 6.2 0.7 1 23 925 948 925 948 0.97 28 34 2.5e-05 0.0011 19.3 1.1 1 23 954 977 954 977 0.96 29 34 3.5e-05 0.0015 18.8 1.9 1 23 983 1006 983 1006 0.98 30 34 0.00095 0.04 14.3 0.8 1 23 1012 1035 1012 1035 0.97 31 34 0.032 1.4 9.5 0.6 1 23 1041 1064 1041 1064 0.98 32 34 1.3e-05 0.00057 20.1 1.1 1 23 1070 1093 1070 1093 0.97 33 34 4.6e-05 0.0019 18.4 0.9 1 23 1099 1122 1099 1122 0.97 34 34 0.00049 0.021 15.2 2.0 1 23 1128 1151 1128 1151 0.97
Sequence Information
- Coding Sequence
- atgatatttgttgcaaagcccgccgtcgaccagcagccctcgctgcgctcgggcggCAAATGTCGGCGGGCTTTGCCATGTAACCGGacaaaaactttatataaCGCGCGGCCCCTGCGTGCACTACTGTATTCGTCCCGCGCGGACACGGCATTCAGCTCAACGCAAGTAGATCTCGTGCGCTGCAGTAGCGATGCCGGATGTCCCCTTGACTTATCGAATTATCCAGGCGATgaggagcagcagcgataTCAACGTACTGGCCGTCGTCGCCGTCTCCAGTGCCGATGCTGCAAATCAATAATGAGAGAAGATCTCCAcaagggtcgcaaagattatgcatgcaacaaatgcgagaagaaattcggacaaataTCGCATTTGCTtgtccaccaaaggacagttcacgatgatcgtaaaaattttgcatgtgacagatgcgagaagaaatttggacagaaGTCAcatttgctctaccaccaaaggacagtccacgaaggtcggagaGATCAcgcatgtgaaaagtgcgagaagaaatttggacaaaaatcgcatttgcttttacaccaaaagacagtccacgaacgtcgcaaagattatgcgtgtgacaagtgtgagaggaAATTTTGGATTCGAAGCAATTTAATCATGCAcaaaaagacagttcacgaaggccttaaagattttgaatgtgatgattgcgaaaaaaaattcggacaaaaatcgcatttatTACAACATCAAAgtatagtacacgaaggtcgcaaagattacaaatgtgaaaaatgcgaaaaaaaatttggtcaaAAAGGGCATTTACTCAGGCACCAagaaacagtccacgaagatcgcaaagattacgcatgtgaaaattgcgagaaaaaatttggagaaaaaacgaatttgatcatgcaccaaaagacagttcacgaaggtctccacgagggtcagAAAGATTTCACCTTCAAagtcttcaaagattacttatgtaaAAACTGTGGTAAGAAATTTGCAAATAAGCGAAATTTAGTCTTGCACGTGACAAAagttcacgagggtcgcaaagattatgcatgtgacaaatgcgagaagaaatttggacaaaaggtgcatttgtttttgcaccaaaagacagtccatgagggtcgcaaagattttgtatgtgacaagtgcgagcagaaatttggatataaacataatttacttgcacaccaaaggacagtacacgagggtcgcaaagattacgcatgcgacgaatgcgagaagaagtttagACAAAAGTCAtctttgcttttacaccaaaagacaatccatgagggtcgcaaagattttgtatgtgataaatgcgagaaaaaatttggacataaatcgagtttgatttttcaccaaaagacagtccatgagggtcgcaaaaattttgtatgcgataaatgcgaaagtaaatttggaagtaattcagatttgttgaagcaccaaaggacagtccacgaaggtcggaaagatttcgcatgtgataaatgcgagaaaaaatttggacataaatcaaatttgatttttcaccaaaagacagtccatgagggtcgcaaaaattttgaatgcgATGAGTGCGAAAGTAGATTTGGAAGTAgttcagatttgttgaagcacaaaaggacagtccacgaaggtcggaaagatttcgcatgcgacaagtgcgagaaaaaatttggacaaatatCGCATTTGCTTtcacaccaaaagacagtccacgatggtcggaaagattactcatgtgacaagtgcgagaagaaattttcacaaaagtctAATTTGCTCCACCACCAAAAGGTAGTACACgacggtcgcaaagattacgcatgtgataaatgtataaagaaATTTGGCATTCGAAGCAGTTTGATcatgcaccaaaagacagttcacgaaggtctccatgagggtcgcaaaggtTATGCAGGGGAtgattgcgaaaaaaaagtcggaaAAAAATCTGATTTGCTCTGCCATGAAAGGACAGTACACCAAGGTCACAAAGATCACATATGCGGCAGGTGCGAGAAAGAATTTACCGAAAGAAAGAGTTTGTTCAGACATATaaaaacaatccacgaaggtcgtaaagattttgcatgtgacaagtgtgagaagaaatttacacaaaaaccgagtctgctcttacaccaaaagacagtacacggcggttgcaaagattactcatgtgacaagtgcgagaagaaatttggacaaatatCGCATTTgtttttacaccaaaagacacaacacgaaggtcgcaaagatttcgcatgcgacagatgcgagaagaaatttgcacaaaaatctaatttgctctaccaccaaagGGTAGTACACGACggacgcaaagattacgcatgcgataaatgtataaagaaATTTGGCATTCGAAGCAATTTGATcatgcaccaaaagacagttcacgaaggtcgtaaagatttcgcttgtgacagaacagtccacgaaggtcggagggattatttatgtgacaagtgtgagaagaaattttcacaaaaatctaatttgctctaccaccaacggacagtccacgaaggtcggaaaaatttcgcatgcgacaagtgcaagaagacatttggactaaaatcgattttacttTTGCACCAAAGGAGAGTACACGAGGGTAagaaagattacttatgtgacaagtgtgagaagaaattttcacaaaagtctAATTTGCTTTACCACCAAAAGGTAGTACACgacggtcgcaaagattacgcatgtgataaatgtataaagaaATTTGGGATTCGACGCAGTTTGATCATGCAcaaaaagacagttcacgaaggtcgtaaagattttgcatgtgacaagtgtgagaagaaatttacacaaaaaacgaGTTTGCTCAGCCACCTAAAGATAGtgcatgaaggtcgcaaagattacaaatgtgacaaatgcgagaaaaaatatggagggaaatcagatttgtttaagcaccaaaagacaatacacgaagcttgcaaagatttcgcatgcgacaattgcgagaataaatttggaagaaaatcgactttacttctgcatcaaaagacagtccacgaaggtcgcaaagattactcatgtgacaaatgtATAAAGAAATTTGGGATTCAAAACAATTTGATCATACAcaaaaagacagttcacgatggtcgtaaagattatgcttgcgacaagtgcgagaaaaaatttggggaaaGAAGCAATTTGACCAAACACCAAAAatcagtccatgaaggtcgcaaagatttcgcatgcgacaattgcgaaaagaaatttggagaaaaatcaaaattgattagacaccaaaagacagtccacgatggtcgcaaagattacacgtgtgacaaatgcgaaaaaaaattcggacataaatttagtttgctcttgcacattgCTCGAGTCCACGGAAGTCACAAAtaa
- Protein Sequence
- MIFVAKPAVDQQPSLRSGGKCRRALPCNRTKTLYNARPLRALLYSSRADTAFSSTQVDLVRCSSDAGCPLDLSNYPGDEEQQRYQRTGRRRRLQCRCCKSIMREDLHKGRKDYACNKCEKKFGQISHLLVHQRTVHDDRKNFACDRCEKKFGQKSHLLYHQRTVHEGRRDHACEKCEKKFGQKSHLLLHQKTVHERRKDYACDKCERKFWIRSNLIMHKKTVHEGLKDFECDDCEKKFGQKSHLLQHQSIVHEGRKDYKCEKCEKKFGQKGHLLRHQETVHEDRKDYACENCEKKFGEKTNLIMHQKTVHEGLHEGQKDFTFKVFKDYLCKNCGKKFANKRNLVLHVTKVHEGRKDYACDKCEKKFGQKVHLFLHQKTVHEGRKDFVCDKCEQKFGYKHNLLAHQRTVHEGRKDYACDECEKKFRQKSSLLLHQKTIHEGRKDFVCDKCEKKFGHKSSLIFHQKTVHEGRKNFVCDKCESKFGSNSDLLKHQRTVHEGRKDFACDKCEKKFGHKSNLIFHQKTVHEGRKNFECDECESRFGSSSDLLKHKRTVHEGRKDFACDKCEKKFGQISHLLSHQKTVHDGRKDYSCDKCEKKFSQKSNLLHHQKVVHDGRKDYACDKCIKKFGIRSSLIMHQKTVHEGLHEGRKGYAGDDCEKKVGKKSDLLCHERTVHQGHKDHICGRCEKEFTERKSLFRHIKTIHEGRKDFACDKCEKKFTQKPSLLLHQKTVHGGCKDYSCDKCEKKFGQISHLFLHQKTQHEGRKDFACDRCEKKFAQKSNLLYHQRVVHDGRKDYACDKCIKKFGIRSNLIMHQKTVHEGRKDFACDRTVHEGRRDYLCDKCEKKFSQKSNLLYHQRTVHEGRKNFACDKCKKTFGLKSILLLHQRRVHEGKKDYLCDKCEKKFSQKSNLLYHQKVVHDGRKDYACDKCIKKFGIRRSLIMHKKTVHEGRKDFACDKCEKKFTQKTSLLSHLKIVHEGRKDYKCDKCEKKYGGKSDLFKHQKTIHEACKDFACDNCENKFGRKSTLLLHQKTVHEGRKDYSCDKCIKKFGIQNNLIIHKKTVHDGRKDYACDKCEKKFGERSNLTKHQKSVHEGRKDFACDNCEKKFGEKSKLIRHQKTVHDGRKDYTCDKCEKKFGHKFSLLLHIARVHGSHK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -