Basic Information

Transcription Factor Domain

TF Family: zf-BED
Domain: zf-BED domain
PFAM: PF02892
TF Group: Zinc-Coordinating Group
Description: The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 0.17 2e+02 2.0 0.6 8 23 19 31 11 33 0.78

2 8 0.41 4.6e+02 0.9 0.4 18 43 68 90 61 91 0.80

3 8 1 1.1e+03 -0.4 4.0 18 44 97 120 80 120 0.79

4 8 3e-05 0.033 14.1 0.3 18 43 126 148 122 149 0.91

5 8 0.00049 0.55 10.2 0.3 18 44 155 178 153 178 0.94

6 8 0.0016 1.8 8.6 1.0 18 38 184 201 180 206 0.83

7 8 0.043 48 4.0 9.3 17 43 222 245 211 246 0.84

8 8 1.6e-05 0.018 15.0 5.2 2 43 236 274 235 275 0.93

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	0.17	2e+02	2.0	0.6	8	23	19	31	11	33	0.78
2	8	0.41	4.6e+02	0.9	0.4	18	43	68	90	61	91	0.80
3	8	1	1.1e+03	-0.4	4.0	18	44	97	120	80	120	0.79
4	8	3e-05	0.033	14.1	0.3	18	43	126	148	122	149	0.91
5	8	0.00049	0.55	10.2	0.3	18	44	155	178	153	178	0.94
6	8	0.0016	1.8	8.6	1.0	18	38	184	201	180	206	0.83
7	8	0.043	48	4.0	9.3	17	43	222	245	211	246	0.84
8	8	1.6e-05	0.018	15.0	5.2	2	43	236	274	235	275	0.93

Coding Sequence: atgttttttctcgaatttttattttgcgaaaaaaggtttttttctaatatattttccgatgtaaagaaaaaagtcaaatgcAAAAACTGCACCCGACATGCCTTacttatacttcaagaatctgccggtatccaggcgatctttaaacatcgaggtcaaagtggtccggtctaCTCAACACATAATCACATTAAACTCTTCGAGTGTGAGGTAtgttacaaatcatttggatctAAGAGTGTTCTCAATAGACACATAAATATtgtacatgatcgtatcaaaccctttgaatgtgacatttgtcaaacatcatttggacaaaaacaacacctcaaatctcacataaatacagtacataattggagcaaaccatttgaatgtcagatttgtcataaatcatttgcggaaaagagtaatctcaaaaaacacataaatgtagtacatgatcgaagcataccctttgaatgtgacatttgccacAAGTCATTTGGAAACAAAAGTGATcttaaaactcacataaatacagtacataattggagcaaaccatttgaatgtcggatttgccacaaatcatttggatacaagagtAATCTAAATAAACACTCGAATGTAGTACATGATCCAAGCataccctttgaatgtgacatttgccacAACAAACCATTTGAATGTcggatttgtcacaaatcatttgattACCAAAGTCACTTGAAACGACACgtcaatgcagtacatgatcgaagcaaaccctttgaatgtgagatttgtcataaatcatttgcggaaaagagtaatctcaaaaaacacataaatgcagtacatgatcgtagcaaaccctttgaatga
Protein Sequence: MFFLEFLFCEKRFFSNIFSDVKKKVKCKNCTRHALLILQESAGIQAIFKHRGQSGPVYSTHNHIKLFECEVCYKSFGSKSVLNRHINIVHDRIKPFECDICQTSFGQKQHLKSHINTVHNWSKPFECQICHKSFAEKSNLKKHINVVHDRSIPFECDICHKSFGNKSDLKTHINTVHNWSKPFECRICHKSFGYKSNLNKHSNVVHDPSIPFECDICHNKPFECRICHKSFDYQSHLKRHVNAVHDRSKPFECEICHKSFAEKSNLKKHINAVHDRSKPFE

Sequence clustering based on sequence similarity using MMseqs2