Tbra004230.1
Basic Information
- Insect
- Trichogramma brassicae
- Gene Symbol
- -
- Assembly
- GCA_902806795.1
- Location
- CADCXV010000313.1:6571-58171[+]
Transcription Factor Domain
- TF Family
- zf-BED
- Domain
- zf-BED domain
- PFAM
- PF02892
- TF Group
- Zinc-Coordinating Group
- Description
- The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.00053 0.6 10.1 1.4 16 43 114 138 96 139 0.80 2 15 0.0026 2.9 7.9 0.4 15 43 142 167 139 168 0.88 3 15 0.11 1.2e+02 2.7 0.9 19 43 174 204 171 205 0.81 4 15 3.8e-05 0.042 13.8 1.3 14 44 207 234 199 234 0.87 5 15 0.002 2.3 8.2 1.6 18 44 240 263 235 263 0.89 6 15 0.077 87 3.2 0.3 18 29 269 280 265 292 0.77 7 15 0.00011 0.12 12.3 0.6 19 44 298 320 292 320 0.95 8 15 0.00069 0.78 9.7 0.3 19 44 326 348 323 348 0.92 9 15 0.0005 0.57 10.2 0.0 19 44 354 376 352 376 0.93 10 15 0.037 41 4.2 0.2 6 44 370 405 369 405 0.81 11 15 2.5e-06 0.0028 17.5 0.4 19 44 411 433 408 433 0.95 12 15 0.002 2.3 8.2 0.2 19 44 439 461 436 461 0.93 13 15 0.0082 9.2 6.3 0.0 19 44 467 489 464 489 0.92 14 15 0.0011 1.3 9.0 0.1 19 44 495 517 492 517 0.95 15 15 3.2 3.6e+03 -2.0 0.0 30 39 665 674 654 678 0.75
Sequence Information
- Coding Sequence
- ATGGCTATAACCTCTGCGCCTCTCCGCTGCATATACATAAGCCTCCGCTTGTGCcacAATGGCATCGTTACCACTTTGaagcccctaagctgtactaactttctcaaaaaagtttatgttttcgatttttggcggttaaaaattcaaacgttggacgatggcttcgcaaaagcgtcagacgtatcaGCAAAATCcagtgGCATTGAAGATGCACGAGAAGTAGCAGCCAAGAGTTTCGCTCGGATGGAAATATCCATCTACCGTCCGGTCGACGTGTTCtgcaaatcaaaattaaattgttatctcaaaattcacaccGATTCCGCACATAATGGTAAAACTCCCACAtgcgatatttgcggaaaTACGTACTCTCAAAAGGGTAATCTTCGCACCCACATCAACTTAGTGCATAATAGTCAAAAAAGTTACGAATGTGACGTGTGTCGCAAGAAATTCTCGCAAAAGGGCAATCTTCAAAGCCACATTGATTCAGTACACCATAAAATCACCTACGCTTGTGATgtatgtggaaagacattctcacttaaaatttatcttaaaaaacaCATCAATGCGATACATAATGCGATACACATCAACTCGGTTCATAATAGTCAAAAAAGTTACGAATGTGACGTGTGTGGCAAGAAGTTCTCGCGAAAGGGTAATTTGAAAACTCATATCGACACGGTGCATAATAATCTAAAATCTCACAACTGCGATgtatgtgaaaagaaattttcaaaaagtagtTATCTAAAACGACACATTGGCTCGGTGCATAGTGGTAAAAAACCTTACAAATGTGACGTGTGTGCCAAGAAGTTCTCGCGAAAGGATGTTCTGAAAATTCATACCGATTCGATGCATAAAGGCATCACCTATCCATGCGATTTttgcggaaagacattttcccataaaagaaatttaaaaactcacaTCGACTCGGCGCATAAAGGTATCACCTATGATTGCGATTTATGTGGAAAGGCATTTTCCCAcaaaagtaatttgaaaacTCATATCGATTTCGCACATAATGGCATCACCTACCCAtgcgatttttgcgaaaaGACGTTTTCTTATAAAGGTAATCTCCAATctcacatcgattcggtgcataatagAACAAAAAGCTACGAGTGTGACGCTTGCGGCAAGAAGTTCCCGCTAACGGGTACTCTAAAGATTCatatcgattcggtgcataataacATCACCTACCCGTGCGATTTTTGCGGAAAAACATTTTCCCGAAAATCTAATTTGAAACAACATATCTATTCGATACACAAGAACATCACCTACCCATGCGATTTTTGCGGAAAGGCATTTTCCCAAAAATCTCATTTGAAACAACATATCGATTCGATACACAAGAACATCACCTACCCATGCGATTTTTGCGGAAAGCCATTTTCCCAAAAAAGTAGTTTGAAAACTCACATCGATTCGATACACAAGGACATCACCTACCCATGCGATTTTTGCGGAAAGGCATTTTCCCTGAAatcgaatttgaaaattcatatcgattcggtgcataatagTGAAAAAAGTTACGAATGTGACTTAGTTTCATGGGTAGAGTCAGTCCAGAAAGATCAATCGCAAGCAAATTTCTTTGTGAAGAAAATGGAATCAACCGTTAgTCAGCTCTCGTATTGTTGTACACTCCTCGTGATCGCTGGTCGCGAGGGCAGAGCTTTACATCGCTTATACATCTAtaatgtatgcgcgcgaggaTCTTCGCCCTACCAGCCagagaaagaaagagaacggAGAAACCGATgggagagaagaagaagaagaagtacgGGCGAGGCGCGAGAAAACGCGCAAGAAATAATTGCTTCGAGatttacaggtAAAGGTAGTCGCCATCTAGCGATGAGAACTGAAAGTGATGAAAACTGCGTTTGGACACACGTACTACACACGGCCGCTGCGCGATATATATGCGTGGAAAGAGGATCAAAAGAGCAAAGTAAAACTAGTAATGGAATCATCCAACATTTaggaaattcttttttcacgGATGCCACAGGTTCTGAGGTCATAGAAATGCACCAAGATGTTGTTATATTCTTGACAGTACTATCAACATACGTAGACCACTCTATCGTACCAGTGGCACAACTATTATCAGAGAAAAATGATACTAATttattaaactattttttgaacGAGTACATTAAGTCAGGTGGTCAGTACCCAGAGGAAATTGTTACAGACATGGttgaattacattgtcatttgAGCGAGCTGcgattacagcgagccgcgagtCGCGCGTTTGGGCGTCCGCACGGCCGAGTGCTGActatgtttgctcgtatctctcatagaaattatgaaaaatacactttggacacaactgttttttatgtaaaaagacctcagctttccattgaaacaataaaaaacCTCTCATCAACACTTGACAAAGGTACTCGCCAATTAGTGGTGAAGGCTAGTTTTATCAACAGCCGTCGAAAAGCAGAGGATAGTTCAAGGCTACACCGCGTCCCACGGCCAGTTCCCCTTTCAAGCGCACTTGAAGCGTCGCGGCTGGTCCAAGAGCTGGTTCCCGAGCTTCTTCGTCGGCTGGATTCCCACCTGGTTCGCTTCGGACTTCTTCTGCGGCGCCTCGATCATAAACCAGCGCTACCTGCTCACCGCGGCTCACTGCATCTTCGATGGGACGGCGGCATAAACGATATCGCTCTGGTGCGAGTGACGAAAGACATCGTCTACAACGAGTACGTGCAGCCGATCAGGCTGGCGGCCAAGGATCACAAACTGCACGAGGGCTCGATCGTCACGATAACGGGGCGACTCGGGCAGTCCGCTGGTCGACGAGAACGGCATACAGGTGGGCATCGCGACGATAAGCGACGGCTGCGGCCTGACGCACATCGTGCCCGAGGGCTACACCAAGGTGTCGCACTACGCCGACTGGATCGAGGCCTGTCTGAAGCGCGACGAGGGCAGAAACTTGATACTCGTCGCCAATTGACGCGCGACACGCGCGATCGTGGCGGATCATAA
- Protein Sequence
- MAITSAPLRCIYISLRLCHNGIVTTLKPLSCTNFLKKVYVFDFWRLKIQTLDDGFAKASDVSAKSSGIEDAREVAAKSFARMEISIYRPVDVFCKSKLNCYLKIHTDSAHNGKTPTCDICGNTYSQKGNLRTHINLVHNSQKSYECDVCRKKFSQKGNLQSHIDSVHHKITYACDVCGKTFSLKIYLKKHINAIHNAIHINSVHNSQKSYECDVCGKKFSRKGNLKTHIDTVHNNLKSHNCDVCEKKFSKSSYLKRHIGSVHSGKKPYKCDVCAKKFSRKDVLKIHTDSMHKGITYPCDFCGKTFSHKRNLKTHIDSAHKGITYDCDLCGKAFSHKSNLKTHIDFAHNGITYPCDFCEKTFSYKGNLQSHIDSVHNRTKSYECDACGKKFPLTGTLKIHIDSVHNNITYPCDFCGKTFSRKSNLKQHIYSIHKNITYPCDFCGKAFSQKSHLKQHIDSIHKNITYPCDFCGKPFSQKSSLKTHIDSIHKDITYPCDFCGKAFSLKSNLKIHIDSVHNSEKSYECDLVSWVESVQKDQSQANFFVKKMESTVSQLSYCCTLLVIAGREGRALHRLYIYNVCARGSSPYQPEKERERRNRWERRRRRSTGEARENAQEIIASRFTGKGSRHLAMRTESDENCVWTHVLHTAAARYICVERGSKEQSKTSNGIIQHLGNSFFTDATGSEVIEMHQDVVIFLTVLSTYVDHSIVPVAQLLSEKNDTNLLNYFLNEYIKSGGQYPEEIVTDMVELHCHLSELRLQRAASRAFGRPHGRVLTMFARISHRNYEKYTLDTTVFYVKRPQLSIETIKNLSSTLDKGTRQLVVKASFINSRRKAEDSSRLHRVPRPVPLSSALEASRLVQELVPELLRRLDSHLVRFGLLLRRLDHKPALPAHRGSLHLRWDGGINDIALVRVTKDIVYNEYVQPIRLAAKDHKLHEGSIVTITGRLGQSAGRRERHTGGHRDDKRRLRPDAHRARGLHQGVALRRLDRGLSEARRGQKLDTRRQLTRDTRDRGGS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01481703;
- 90% Identity
- iTF_01481703;
- 80% Identity
- iTF_01481703;