Tbra009085.1
Basic Information
- Insect
- Trichogramma brassicae
- Gene Symbol
- Shrm
- Assembly
- GCA_902806795.1
- Location
- CADCXV010000676.1:201316-250512[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2.5 3.6e+03 -2.3 0.1 2 18 888 904 887 905 0.78 2 2 5.1e-08 7.2e-05 22.3 0.0 3 41 1216 1254 1214 1258 0.91
Sequence Information
- Coding Sequence
- atgaatgaaaaagtgGTTGCGATAGGTAAATCCTCCGCCGAGAGCAGACCAAACGTTTTGGCTGATTTATTGGCACAGAAGTATTCTGATTCTGGCTGTCAACGAGCGTCGCCTCAAGTACCAGTTGTGTCAAACAATGGCATTCCACTTGAACACAATCAAGCATTGACGCGGAACTCGTCGAATAGGCAGAGTCGAACCAGTCCACAAGTTGCCAAAAGTGCTCCGATCAAGGGTAACGTCTTACCTTCAACGACGAGCCCGATTACCAGCCGAAATGGCGATGCCTCGAAGAGAAATAATCTAGCCAAGTATCAGACGAGAAACTATTTAGCACTGCCTCCCAAATATACGGAAGCGCCAGGAATTCCATCATCGCCAGattcgccaccgccgccgttgGCGCCTAGAATTAGCAACGCAAAGAAAATCTCGCCACCACCAAGACCTGCGCCTCCTATTCACAATCGAGGAGACGGTGAAACCGAAGCCGTACATGATCCTCCTTCCTCTCCTCCGCCACCGCTGCATCCGCGCCTGATCTGCATCTCCGCCAGCCGCTCGGCAGTCACATCCGGACTTTGGCGcagagccgagcgagcgaaagacGCGGCCGCGTCAGTCGGTTTCTTCATACAcagcggcagcagcagcgcaacaaCGAGCAAACAAAATGACGAATCCGCGTGCGGTGCGCGAGCTTGCAACGATCGCGAGAAAACGAATAACGCTCGCGTACTCTTGGACCCGATCCGATTCGAGACGATCGCGTCccgaagaaagagaaaacgcGAGAATAAGAAGGCGTGCGTGGCAcagctgcagcacacacatcGAAAGTTACTCGACAGCACCGCACGGCTGCCGATCGTCGTCGATCTTTTACTCGATCTCTCgcatttatatgtAAGTCAATCCAAGGCCTCCTACTTGGCGTATCGTCGGGAACGCGGCGCTCCGGAGTGCGGAGGTAGCTACAAGCGCACCATGTCGCCCAACGCGCGCGTCGACGATCCCGTCCTTCTCAAAGTcacgcaacagcagcagcaactcaaCAATTCGACGTACACGGTATCGAGCAACGGTGGCAGCAACAGTCCTCTCAACGGCTcctatcagcagcagcaacaatcgtcgtcgtcgccaccCACGACGaggcatcatcatcatcatcagcagcagcatcatcatcacgaGCTCGGCAAGTCCCAGAGCTCCGACGCCCTGCTGGCCGGGCGCAAATCCGAGGAGAAcggcaagcagcagcagaggctaTCGCCCCAGAGCGTCGAGGCGCTCAACGACAGGAACAGACAGCTGGAGCGAGAGAGGCGAAAATTGGCCGCCAGCTGCGAGCCACGATTCGCCCATTACTATCGCGAGCACGCCGAGACCATCGAGATGACCTCGCAGAACGTGGAGATGCTCAATCGGAAAAACGAGAGGCAGAGGCTGGCCCCGATCAACGTCACTTATAGCGTCAACGGCACCGACTCGAATAGTCCACCGCCATCGCCGCCACGAGGAATACTAGATAGCCAAGGTGTGAGCCTGTCTTCCGgcagcaactgcagcagcagcctggcCCTCACCGAAATTCTCTCGGATCGATCTCAACTTCAAGTGTCCAGTCCGACGCAGACCGACAACAACTGGAACGGCACGCAGTCGCTTTGGAACGCGGCGAATCGCGGCCTCAACGACTTTTCCAGAACGCCAACCGCTTGGAGCATCGCGAGTTCGAGCAGTCAGGGCTCGAGCCTGTCGAATGGCTCGGCTCAATCGACGTCTCCGTGCAGATCGGCTGCGACGCCAACTAGATCGACGTGGCAGTCGTCGCCGGCGTCGCCTCGGGTCTCGCCGCAGCCCGAAAATCGGCAGTCCAACAAATCTAATTCCAAGGGCAACGCGTCTACCAACGACGTAGCGTCCCAAACTGAAGAGCTGGAAAAGTCCAGCGACgagaaggaggaaaaagaGATGGAAATTCCAGGACCGGAGCACAAACAGTCAACGGATTACATTGTCGACCTGTTCAGGGTAGACTCGGCTCCGCAACCACGTTCACGGCCCAAGTCGATGAACGAAGAGCCGATCGCAGCAGACGAAAAGCCAGAAAAAGAGTcagcatcaacaacaacaacaacaacaacaacaacaacaacaacagacggcgaaaagaaaaaGCACTCGAGCACATACTACGCGCGGAGACAGGCTTGCAGACGCCAGAGTATCTCGTGCTCGAGCGTATAtgttgtacattatatacgtttatattatacacacatacctaCAGACACTGAAAGACGGCCACACGGCATTGTTGTGCGCCGCGCACAGCGATCTCTCTCCGACACTTGGATTGAGTCGCTACCAGCTACGTTACTGTCGCCAGCGGCATTCGACATTGATAGCAGTCCTCTATCGACTAAATCGAGCAACTGTCTCGCGACGGCGGATAGCAAAGCTCGATTCCTCGACAGAATGTCGACAGAACAAATACCGGAGAACGAGTCGAATGGCCTCGAGTTAACCGGTAGCGCTAACAGATTGACGCCCGATGATAATGCCGAGCTGCAGCAGAAAAAGGAGGAATTGATGGTTCGCTTGGATAAGAAGTTGGTGGTTTTGCGCGCCGAGCAGGACGCCGTGCGCGAGGAAGAAGAACTCAACGAAGCTTTGGGAGCACGATTAGCCGAAAAAGTCTCGACTCTCCTTGATCCCATTGATTTTGTTAAGTATCAATTGCACGTCGAAGAGATCGGCGAAATTACGAGTTTGCTTCTCGGTCTGAGCGGTAGACTCGCCCTAACAGAAAATATTCTCTACGGCATGGAATCCGATCAACCCGAAAAGACGCGAATCAGATTCAGGACAAGacaccaaaagatagtccacgaaggtagcaaagattacgaatgcgataaatgtgaaaagaaatttggacgaaaatggAATTTGttaaaacaccaaaagacagtccatgaaggtcgcaaagattacgcatgcaacatgtgtgagaaaaaatttggacgaaaatggAATTTGTTAaaacatcaaaagacagtccatgaaggtcgcaaagattacgcatgcaacatgtgcgagaaaaaatttagacgaAAATCGTATTTGCACTTACACCAAAacacagtccatgaaggtcgcaaagattacgcatgtgacaaatgcgagaataGATTTGGACAGAAATGGAGCTTGTTtatgcacataaaaacagtccacgagggtcgcaaagattttgcatgcgataattgcgagaaaaaatttgcacgaaaatatgatttgtttaggcaccaaaaaacagtccacgaaggtcgcgaagattacgcatgcaacatCGGAGTTCAGcagcgtgtgtatatgcgcgatCCTCTGCACATCGCTCGAGCCCTATACAAGTctgaaagctccgggagagagagaagcggtCCAAGACTTACACGCGACGATATCCTGGCTGCAGTGGCgagcaagaaaaagacgagtggcggcagcggcagcagaagcGGTGGCGGGGGCGAGAAACTTTTTGCGCGCTGCCGCCATATACGCTGCTCGTCGGCGCCTTACACTGTTCTATCAACGGACATCGTCAGAAAGAAAGGTTTATGGAGCGGTACTCAACTACGACAAGCTAttgaattgattgaaaatgaaaactacTCAATCAGAGCAGCAGGTATACGGTACGGCATTCCGGAGAGCACGATTCGTCGGCGCTTGAAATCTTCAACGCCCAGAGTGAATAGGTCGAGCTCTCCTTCATTTGGAAGACTTCCAGTATTTGATAAAGAACAAGAAAAACTGTTTTCAAAAGCATACTATGAAGTGGCCTCGCCAAGTAAAGGTATTAATGGATTTGAATGTGCAGGAATACATCCTCCAAACCGGCGTATATTTCACAGCATTTTTAGAggcgaagaagaaaattctGCTGATAAACAGTCTGCAGCAGAAGAAAATGAAGCTGAGGAAGATCTTGAAGAAAATTCAGTTGAGCAACATTCAGTTGAGCAACATTCAGTTGAGCAACATTCAGTTGAGCAACATTCAGTTGAAGAGTTCATGACAGAGGAGTCGAAACTCTCAAGAGCTCGTCGCTGCGaatgcgaggacgagagtcgatgtgctctggccggcagccgagagacgacttccacttgcttggccggacgcctcgcttatataggaagcaagagcgcgctgattggccgttggcgcaagGTCAGGCtgtgcacgacgacgatgccgaagctccgcagcagcagcagcagcagtagcagcccgACTATAGAACCTATACTCTATGTGCCATGGGCTCGAAGCGATCGTGGTGTCGGGGACTCGACGCATCGAAAATTCGCATCCGGTACACggtacagatatatatacgcagcagAGTTTGTGTATACGGCGCGCGTTAGACGAGCCATTCGCAAATTGGGCGCCCGAACAGGCGATAAACGTCGcccggagagaaagagagagagagagagaggaaggatGCGAcgtcggcggtggcggctctga
- Protein Sequence
- MNEKVVAIGKSSAESRPNVLADLLAQKYSDSGCQRASPQVPVVSNNGIPLEHNQALTRNSSNRQSRTSPQVAKSAPIKGNVLPSTTSPITSRNGDASKRNNLAKYQTRNYLALPPKYTEAPGIPSSPDSPPPPLAPRISNAKKISPPPRPAPPIHNRGDGETEAVHDPPSSPPPPLHPRLICISASRSAVTSGLWRRAERAKDAAASVGFFIHSGSSSATTSKQNDESACGARACNDREKTNNARVLLDPIRFETIASRRKRKRENKKACVAQLQHTHRKLLDSTARLPIVVDLLLDLSHLYVSQSKASYLAYRRERGAPECGGSYKRTMSPNARVDDPVLLKVTQQQQQLNNSTYTVSSNGGSNSPLNGSYQQQQQSSSSPPTTRHHHHHQQQHHHHELGKSQSSDALLAGRKSEENGKQQQRLSPQSVEALNDRNRQLERERRKLAASCEPRFAHYYREHAETIEMTSQNVEMLNRKNERQRLAPINVTYSVNGTDSNSPPPSPPRGILDSQGVSLSSGSNCSSSLALTEILSDRSQLQVSSPTQTDNNWNGTQSLWNAANRGLNDFSRTPTAWSIASSSSQGSSLSNGSAQSTSPCRSAATPTRSTWQSSPASPRVSPQPENRQSNKSNSKGNASTNDVASQTEELEKSSDEKEEKEMEIPGPEHKQSTDYIVDLFRVDSAPQPRSRPKSMNEEPIAADEKPEKESASTTTTTTTTTTTTDGEKKKHSSTYYARRQACRRQSISCSSVYVVHYIRLYYTHIPTDTERRPHGIVVRRAQRSLSDTWIESLPATLLSPAAFDIDSSPLSTKSSNCLATADSKARFLDRMSTEQIPENESNGLELTGSANRLTPDDNAELQQKKEELMVRLDKKLVVLRAEQDAVREEEELNEALGARLAEKVSTLLDPIDFVKYQLHVEEIGEITSLLLGLSGRLALTENILYGMESDQPEKTRIRFRTRHQKIVHEGSKDYECDKCEKKFGRKWNLLKHQKTVHEGRKDYACNMCEKKFGRKWNLLKHQKTVHEGRKDYACNMCEKKFRRKSYLHLHQNTVHEGRKDYACDKCENRFGQKWSLFMHIKTVHEGRKDFACDNCEKKFARKYDLFRHQKTVHEGREDYACNIGVQQRVYMRDPLHIARALYKSESSGRERSGPRLTRDDILAAVASKKKTSGGSGSRSGGGGEKLFARCRHIRCSSAPYTVLSTDIVRKKGLWSGTQLRQAIELIENENYSIRAAGIRYGIPESTIRRRLKSSTPRVNRSSSPSFGRLPVFDKEQEKLFSKAYYEVASPSKGINGFECAGIHPPNRRIFHSIFRGEEENSADKQSAAEENEAEEDLEENSVEQHSVEQHSVEQHSVEQHSVEEFMTEESKLSRARRCECEDESRCALAGSRETTSTCLAGRLAYIGSKSALIGRWRKVRLCTTTMPKLRSSSSSSSSPTIEPILYVPWARSDRGVGDSTHRKFASGTRYRYIYAAEFVYTARVRRAIRKLGARTGDKRRPERKRERERGRMRRRRWRL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01481921;
- 90% Identity
- iTF_01481921;
- 80% Identity
- iTF_01481921;