Tbra003860.1
Basic Information
- Insect
- Trichogramma brassicae
- Gene Symbol
- KEG
- Assembly
- GCA_902806795.1
- Location
- CADCXV010000699.1:582175-598825[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 8.5 1.2e+04 -4.0 0.2 5 13 42 50 42 53 0.85 2 2 2.6e-08 3.6e-05 23.3 0.0 4 36 499 531 496 533 0.85
Sequence Information
- Coding Sequence
- atgGCGTTTCCATCCGGAGATTCAGCTGGACTGTGCGATTCTTTCTTTTCAGGGCGATCACGGCAGTCCCTTGGTGATACGCGATCGCGAGATCCTGGGCATCCACTCGAACGGGCCCGAGGACTGCAACGAGCTCTACGCGCCGTCGCTGTACACGCGAGTCGAGCCGTATCGCTCGCTGATTCGCCACGCGCTCCAAAATTCGGCCGGCGAGAATCATCGCGTGTACAAGTACGACAAGGCGAGCGATCGCTACTACGATACCAGGCCTCTCGACCGATAGATATAGATCTGGACCTCGaaattatgtacaaaaaaaacaaatatgttttgcagaaaataaatgtttacgtgtttcattatttatttttttatatacatgacGAACGaaaaagtaacccaaATCCAGTCTCGGCGATACTCAACGGGGACGAGGCGCCTCACGAGCAGTTCGCTTACGCCGTGAGCATTCAGGACACTCACGGCCGCAATCTCTGCGCCGGCACCCTCATCGCGCTGCGCTACGTCCTCACCGCCGCGCACTGCGTCACAAACGCCGACGGCTCCGTGGTCCATCTGCCCTATCGCGTGTTCGCCGGCTCGGCTGATCTCAACTCCAAGAACTCGAACGTCGCGGTTTCCTCGGTGTCGCGCATCTACGTGCCCAAAGCGTTCAAACAACGCGAGCAGACGGGCGGCTCGTATCACCAGGCCGACCTGGCCGTGCTCAAGCTGCACATTCCCATGACGAATCGCGTACGACTGGCCCGAATCTTGGACAACGAGCGTGCGCCCGGTGCCGGAGCGATGGGTCGGGTCGCCGGCTACGGGGCCTTCGACGTGCGCAGGGAACGCGACCCAGAGACCGGCGAGCAGCGCTTGCACGAGGTCGGCCCGAAGAATCGTCGACTGCGCTTTTTGACGCACTACGTGACGACGCAGCGCAGCTGCTCGTCCTTCTATCCCGAGGTGGAGCAAGATCCGGCCGTGTTCTGCGCCAAGTCGCTGCCGGCCGGTCTGTTCGATCGTAAGGGCGTCTGCGTGGGTGATCACGGCGCGGCGCTGGTCGACAAGCACAACGAGATCCTGGGCGTCTGGTCGCAGGGCCCGGATGACTGCAACGACGCGGACGGGCACGCGATCTACACGCGCGTCTCGATGTATCGCGATCTGATCGATCGCGCCGAGGCCGACCGCCACGAGGGCCTCGAGGTCTGGAAGTACAACAAGCAGACGAGGACCTACCTCTATATCATGTTTAACAAGAATTTGATCAACATCTGGAAGAGCATTAGTAACTATTGTTTGAAGAACACGCTGATCAGCTTTGATACCTAcaacaaattatatattattttacaGTTACGGACATATACCCACAAAAGAAACTGCATGGAAAGAAATTCGAGAGGAGCTGCTATTACAGCAAGTCGAAGGAGATGTGCTGGTCGGAAATCAAAGTAcgttagaaaagaaaaatcttggACCAGCAATGATTTGCAACAAGCCTTTGAAGAGATGTCGAAGGGAATGACAATTAATCAGGCTTCATCAACTTATAACATTCCAAGAGAAACATtgagaagaaaatatttattgtataaagATGTTGGACAAACGGATGAAATCATATCTGAGAAAAGTATCAAAGCTGATCAGCGTGTTCTTCAAACAATAGTTACTAATGCTCTTCCAGATGTTGATCAAATTCTTGTTAAACATGATATAGAGCTaggtttaattaatttaaactgCAACAACAACGTCATCATAGGAGAGCTGAACTTACCGCTCCCACAACTCGAGGAGTTCCTCCGGGCCAACATCAATTCCAAGAAAGACGAGTTGATGGACTACCAATGCATGTCGTTGATCGAGCGAATGCCCGCAATGAAATTTAAAGACAAGCCGAAAGTCGACCAAGAAGGTAAGCTGATACTACGGCGTACCACAGCGATACATTTCGTGGCCAGGCGCGATTTACCCATGGGGAGCCGCAAAATTCGGGCCCTTTTTCAAGTGTACAACAAATTCGAGGCGAATTACGCGGACGAGACGGGCTTGAGCCACCTCCACGTGGCCTGCCGATACGGCTTCGACGACATagtcgaaaaatttatcgaagcGGGACACAGTCCGAACTTCCGACCGTTGAAAACGGTCGAcccgccgctgcacttggcctTGTGCCACGGACACTGGAAGACGGCCGAATTTCTCCTAAGTCGaggtggcgccgatccgaatgcgaCCAGCAGAGACGAATTGACGGCCTTGCACGTGCTCAGCCAGAAACACAAGTGCGATACGGCCTTGGCGCAGACGTTGCTCTACGGCAGCGTCGGAGTGCGAGTCGACGCTTGGGATAAGCTCGGCAATACACCGCTGCATCTGGCCCTACATTGGGGAAACACGGAGATGGCCAAGCTGCTGTTGAGGTgcggcgccaatccgaatttcgTCAACAGCGCCGGGATGAGTCCGCTTCACGTCATCTCCAGGCGAGACCGCCACGGAAATTTGGCGGAGCTGTTCTTCGACGTCGTGGATGAGATGCAGCTGACGGTGCAAGTCGACGCCTGGGACAAGAAGGGCAACACACCACTGCATTATGCCCTGCAACAGCGACTCAAGAGGGTGACCGAACTGCTGCTGAGgcgtggcgccgatcccaatTTGGCCTGCGCCGACGGTGGCAATTGTCTGCACATCTTCTGCCGGCAGCAATGCGACGGCGAGCTCATCGACGCGTTCTTCCAAGTCGTCAACGAGAGACGCCACCTGATGGAGGTCAACGCCCGAGATAAGCGGGGCGATACGCCCCTGCACTTGGCCCTGCGACGCGACGACAAAGCCATGgccgagttgctgctgcggaGTGGCGCTGATGCGCTTCTGGCCAACAACGAGGGAGACACACCCCTGCTCATGATGAGTCGCAATCACGACGAGTACCGCGACTTGCTGGATATTCTGAGTGGTCTCACCTGCAATCAACCTCAGACGGTACAGCTCGACGTCGTGGCCAGTCCGGCCCAGACCCTTACCTACACCGTCCTCTGA
- Protein Sequence
- MAFPSGDSAGLCDSFFSGRSRQSLGDTRSRDPGHPLERARGLQRALRAVAVHASRAVSLADSPRAPKFGRRESSRVQVRQGERSLLRYQASRPIDIDLDLEIMYKKNKYVLQKINVYVFHYLFFYIHDERKSNPNPVSAILNGDEAPHEQFAYAVSIQDTHGRNLCAGTLIALRYVLTAAHCVTNADGSVVHLPYRVFAGSADLNSKNSNVAVSSVSRIYVPKAFKQREQTGGSYHQADLAVLKLHIPMTNRVRLARILDNERAPGAGAMGRVAGYGAFDVRRERDPETGEQRLHEVGPKNRRLRFLTHYVTTQRSCSSFYPEVEQDPAVFCAKSLPAGLFDRKGVCVGDHGAALVDKHNEILGVWSQGPDDCNDADGHAIYTRVSMYRDLIDRAEADRHEGLEVWKYNKQTRTYLYIMFNKNLINIWKSISNYCLKNTLISFDTYNKLYIILQLRTYTHKRNCMERNSRGAAITASRRRCAGRKSKYVRKEKSWTSNDLQQAFEEMSKGMTINQASSTYNIPRETLRRKYLLYKDVGQTDEIISEKSIKADQRVLQTIVTNALPDVDQILVKHDIELGLINLNCNNNVIIGELNLPLPQLEEFLRANINSKKDELMDYQCMSLIERMPAMKFKDKPKVDQEGKLILRRTTAIHFVARRDLPMGSRKIRALFQVYNKFEANYADETGLSHLHVACRYGFDDIVEKFIEAGHSPNFRPLKTVDPPLHLALCHGHWKTAEFLLSRGGADPNATSRDELTALHVLSQKHKCDTALAQTLLYGSVGVRVDAWDKLGNTPLHLALHWGNTEMAKLLLRCGANPNFVNSAGMSPLHVISRRDRHGNLAELFFDVVDEMQLTVQVDAWDKKGNTPLHYALQQRLKRVTELLLRRGADPNLACADGGNCLHIFCRQQCDGELIDAFFQVVNERRHLMEVNARDKRGDTPLHLALRRDDKAMAELLLRSGADALLANNEGDTPLLMMSRNHDEYRDLLDILSGLTCNQPQTVQLDVVASPAQTLTYTVL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -