Basic Information

Insect: Trichogramma brassicae
Gene Symbol: rn
Assembly: GCA_902806795.1
Location: CADCXV010000447.1:28006-63627[+]

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 2 2.7e-08 3.9e-05 23.2 0.0 4 36 429 461 426 463 0.85

2 2 5.6 7.9e+03 -3.4 0.0 19 31 505 517 505 517 0.81

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	2	2.7e-08	3.9e-05	23.2	0.0	4	36	429	461	426	463	0.85
2	2	5.6	7.9e+03	-3.4	0.0	19	31	505	517	505	517	0.81

Sequence Information

Coding Sequence: ATGGAAGTTCGTGCTATGGAATATCGACCGGTTGTTTCCAGTCTACAGGACTACCATGCATCGATTCCAGACTTAAGTCCACCAAGAAGTCAAGGGTCTTCAACGGGTGCCAATTCAACTTTAGGAGATTACACGCCTCGTTTATATACTCCACCTACACCACCGACAGCAAACGAAGATGAAAAGACTGGGAGAAATAGAAAAGTCTCAGGCccgttgaaaaatcgaaaaattgaacaaattcGGGTGGTATCAGTCGACATTCCAGAAAGTCTTCTGGAACATATTCCAAAACATAAAGAATCGAAACACTTAAAAACTCATATATGTCAATATTGTGGTAAGAGTTATACTCAGGAGACATATTTAGCTAAGCACATGCAAAAGCACGCTGAACGTACTGATAAGCGACCTCCTATTATTAGTGCAAGTCTTAGGCCTGCAATACATTCAATGGCTGCAgccgctgcagctgcagtTGCACATCACCAAACTGATCATTACTGGTCCAAAGTCAGTTCTGATTCTGTACTTAATGATCTCCATGAACGACTCCCTCATCACCATCATTCTTCTTCAAACCAAGACTACCATCAGAGCCAAacacaaaatgaaattttattgtcTCCTCCAACTCAATCTCATCGAGAAGTTTTGGaagcagctgctgcagctgcagttgTAGCAGCATCCGCTACATCCGATACTCGTCAACAAACGTCGCATTCAAATCATTCACATGGACATGGCCATCAATCTGCAAACAATCCAAATAGCAGTTCAGCATTCACTCccatttcatcaatttcaattaattcgaTTTCTTCAATGCAGCATTCTTTAAATCCACTAAATCATCTTCACTACTCCACCAGTCATCATTCTGGTCCAAGGCCATATTCATATCAACATTCCAGTAtacggaaaaaatatattttatATTGTTTATTTAGGTTACCAAGCAGTTGGAGCGACGCAGCAACGGTCATTCTCCTGGTGACGATTGGACGGTGCAATACTCGAGCTATCGCCACAGCCCCGATTGTTTCCGGTGATCTGTTGCAGCAATTGGTAATCAGTTTGCCACGTCATTGGTTCATTCGTACATTGGACCTTGAGAAggcattttcaaaaatcccgTTGAGAACGGAAGATTATCCAAAGTCTACTCTTATCACCCCGTCCGGCCTGTACGAGTTAAAATTTATGACATTTGGGGTGCGGAACGCCGCGCAGACGTTCCAGAGAAAGTAcgttagaaaagaaaaatcttggACCAGCAATGATTTGCAACAAGCCTTTGAAGAGATGTCGAAGGGAATGACAATTAATCAGGCTTCATCAACTTATAACATTCCAAGAGAAACATtgagaagaaaatatttattgtataaagATGTTGGACAAACGGATGAAATCATATCTGAGAAAACTTCTTCCAAATTGACAGAATTGCTCTCTCCACaactaaaaatgatgttttggcttcttccttacatcaaaacgaataaaatgagacatctacagtatcgatacgaagtaccgtcatcgagatatcactgcgcacatcccaacacacacacacacacacacacacacacacacacacacacacacacacacacacatcatgccatcgatgacgtcatttccaccgcccgtgaggccatcgccggtaagagatggtaccgcggcaccaaaaagtactgcgccgtggtgacactcgacgtgaggaatgcgttcaactcggctcggtgggacaacatcctcgccgctctacgccgtttgctcgtacccgattacttgctgagaataatcgccagctacttctcggcaagagtgctcgacttcaccacggacgaaggtccagagtcctacgaagtgacagcaggagttccacaggggtcagtacttggcccgatcgtgtggaacgttatgtatgacgcgatcctgcgcctcaacttcgatggcgatgttcgtatcgtcggtttcgcggacgacatcgcagtggtggctgtcgccaagcatctatggcagatcgaacataatctgaacgctgcgattctacaggtgcgaggagcgctccagtctctcagcttacaaacggctgaccacaagacggaggctctgctcatcacaagcaggaaaaaagtggaaaccatcaccatcacggtaggcgaccacagcatactctcgtccccctccatccgctacctgggactgcacatcgacgccaagctgaagttcgaccaccacctccgaacagtcagcgcaaaggcagccggtgtgatcggtgcccttgcgaagatcatgcccaactctggcgggcccagaagcagccgacgcaagctgtatgctcacgtcgtcgactccatactcctgtacggagcccccgtctggagcacagcagcactaaAGCGAGCCTTCATGCAGCAGGCGGAGTCTGCcgaccgacgagcctgcctgcgtgtgatcggaggccggccgcatgtcgcctacgaggccacatatgtccttgccggcataccaccgctggcccttctcgcggatgagcgagcgcggctctacggccgccgccgagaggacgcaaaggacgaggaacgcttggcaacgctaagcaagtggcaggaagcatgggaccggtcgaagaaggcccgatggacgcaccgactgatcccaaacatcagagtgtggatcgagaggaggcacggagagctgaactaccacctcacgcagctcttgaccgggcatggcttctttaaacaccatagccgacgctacgaccacaatcaaagcgctcaatgcccggtctgcccctcatccatcgagaatgcggagcacgtgttttatcactgcccgaggttcagcgaagaaagagagagactacactccctgctctacgaggtcatgacgccagaaaacaccaccaggctcatgctcgcgaTTCAACGAGTGCGGTTTGGCCATTTTGTGCATGTGGACGAGAGTCGACGCCATTGCGCATCGTTCATCATCAACGCAAGGCACAACACATCCAGCAACTCCGTAGTTACGCATCACCGTTGTGATCTTCGTGCGTTTGTTATTATCGGTGCACGCGCACTACTGTGTATCAACCAGCAGGCGCAAAATTGCAATTCTTCCAGTAGAGAGCATAGCTGTACGCGGGTAGTCGCCGCTCGTCGCTACAGTATACACGGTgccgcgcacacatataaaaCGACAATTTGA
Protein Sequence: MEVRAMEYRPVVSSLQDYHASIPDLSPPRSQGSSTGANSTLGDYTPRLYTPPTPPTANEDEKTGRNRKVSGPLKNRKIEQIRVVSVDIPESLLEHIPKHKESKHLKTHICQYCGKSYTQETYLAKHMQKHAERTDKRPPIISASLRPAIHSMAAAAAAAVAHHQTDHYWSKVSSDSVLNDLHERLPHHHHSSSNQDYHQSQTQNEILLSPPTQSHREVLEAAAAAAVVAASATSDTRQQTSHSNHSHGHGHQSANNPNSSSAFTPISSISINSISSMQHSLNPLNHLHYSTSHHSGPRPYSYQHSSIRKKYILYCLFRLPSSWSDAATVILLVTIGRCNTRAIATAPIVSGDLLQQLVISLPRHWFIRTLDLEKAFSKIPLRTEDYPKSTLITPSGLYELKFMTFGVRNAAQTFQRKYVRKEKSWTSNDLQQAFEEMSKGMTINQASSTYNIPRETLRRKYLLYKDVGQTDEIISEKTSSKLTELLSPQLKMMFWLLPYIKTNKMRHLQYRYEVPSSRYHCAHPNTHTHTHTHTHTHTHTHTHHAIDDVISTAREAIAGKRWYRGTKKYCAVVTLDVRNAFNSARWDNILAALRRLLVPDYLLRIIASYFSARVLDFTTDEGPESYEVTAGVPQGSVLGPIVWNVMYDAILRLNFDGDVRIVGFADDIAVVAVAKHLWQIEHNLNAAILQVRGALQSLSLQTADHKTEALLITSRKKVETITITVGDHSILSSPSIRYLGLHIDAKLKFDHHLRTVSAKAAGVIGALAKIMPNSGGPRSSRRKLYAHVVDSILLYGAPVWSTAALKRAFMQQAESADRRACLRVIGGRPHVAYEATYVLAGIPPLALLADERARLYGRRREDAKDEERLATLSKWQEAWDRSKKARWTHRLIPNIRVWIERRHGELNYHLTQLLTGHGFFKHHSRRYDHNQSAQCPVCPSSIENAEHVFYHCPRFSEERERLHSLLYEVMTPENTTRLMLAIQRVRFGHFVHVDESRRHCASFIINARHNTSSNSVVTHHRCDLRAFVIIGARALLCINQQAQNCNSSSREHSCTRVVAARRYSIHGAAHTYKTTI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -