Tbra014218.1
Basic Information
- Insect
- Trichogramma brassicae
- Gene Symbol
- -
- Assembly
- GCA_902806795.1
- Location
- CADCXV010001460.1:1283663-1287140[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.8 2.6e+03 -1.8 0.0 30 42 267 280 267 282 0.89 2 2 6.9e-10 9.8e-07 28.3 0.5 2 38 429 465 428 469 0.89
Sequence Information
- Coding Sequence
- ATGGAATACGGAGAGCAGCTGCAGGAACAAAACTGCATATCGTCGTTTTCCGCGGTGGAGGACGAGCTCGAGGAGGACGAGGAAAAAGTCGAAGGTCTACCCGACGACATCCACATTCAAGAGTACGAAGACGTGGATGCTGGACCAATGAAAGCGTCGGGTAACAACTTGTTCTTCGGCATCACGGAGCCAGAGAGTCCCGAAGCTCAAAACATGGAGAACGAAGACGAGCTCGACTACGAGAACAATTCCAACTCGGCCAACGGTCACAGCAGATCCGAGCCGATTCGCAGCATACTCGTGAAGCTCGACTCGGGAGTGATCAAACGACTCTACAGGTGCAATCACTGCGATCAGGTATTCGACAGCGTGCGGCACTGCGTGAAACACATGACGACGAGCCACCAGACGAATCGAAAGTACCGAGTCGCTTATCGCTGCAAGACCTGCGGCAAGCTCTTCCGCACCAAGTACGGCTGCGAGAATCACATACAGGGTAAGCACAAGAACCGAACGATTCGCTGCCGTTACTGCGACTTCGAGACGTCGAGCGTCACCTACATCAAGAAGCACGAGCGCAACCACCTCGACGACTTCGAGATCAGGTGCGACCTGTGCAACAAGGGCTTCGCCTCGAAAACCGTCCTGGAGCGTCACATGATCAGCCACACCGGCGAGAAGCCCTTCGTCTGCGAGAAGTGCAACGCCAGCTACGCGGACAAGCGCAGCCTGACCCTGCACATGACGGTGCACGACCCCGAGGGCCGGCCCAAGCGCTACACCTGCGACCAGTGCGACTACTCGAGCTTCTGGAAGAACGCCGTCAAGACCCACATGAAGGTGCACACGGGCGCCAAGGTCATCTGCGACGAGTGCGGCCAGGCGGTGGCCAGCAACTACTACCTCAAGATACACAAGCGGATACACAGCGACGAGAAGCCCTTCACGTGCGACGTCTGCAACAAGGGCTTTCGTCAGATGAAGAACTTGGTCGTGCACCGGCGCACTCATACCAAAGTCAAGCCTTACAAGTGTCACGCCTGCGACAAGAGCTTCTCCCAGAACGTCTGGCTGAAGAAGCACAAGTGCCGAAGCAATTCGGCGGCCGAGAACCACCACGTCGAGGTCGGTGGCCCCGCCGGCAACGAGGCGGAAATGGCCGAGGCCGAGGTCGACATGGATCCCGACAACATCGAGTCGATCAATGacaattttcagCGAGAAAAGTCTGCCAAGTCCACCGAGGGCGGCAGGCAAAAGCCAAAGCAGCGCGGCCGGTGGACCGAGGCCGGCATGCAGGCCGCCGTCTCGGCGATactcgcgaaaaaaatgacgCTGCGCAAGGCCTCGTTGTACTTCGCCGTGCCGAAGTCTACCCTGGCCTCGCGCATGAAGTCCATCCAGGCCGGCGAGCAGGTGGACTTGGCCCCGCAGATAGGTAGCTTTCAGAAGGCCCTGTGCCAGAGACTAGAGTCGCAATTGATCGCGCGTCTGAAAGAGCAGGAGGCGCGCTTTTTGCCGCTGCACAAGCGCGAGTTCCTCAAGCTGGCCTACGATCTGGCCGAGCACCTGCAGCTGCCCCACAAGTTCAACAGGTCCAACAAGACGGCCGGGAAAAAGTTTTACTACGACTTTACCCTGCGCCACCCGGAGCTCTCCGTGATAGCCGACCCGAGCCTGACCAGTCCCAAGACCTCGGCGCCGATCAGCAAGACGCAGGTCGATCAGTTTTTCAAGGTCTACCAGGAGCTCGTGGACAGGCTGGGCCTGAGCCCGGGCCAGATACACAGCTGCGAGGAGACGAGCGTGCTGATACATCACCGCGACATCAGGCGCAACGTGAACGTGTGCAAGCTGACGCCGAGCGAGCGGGGCACGGTGCTGCTGAGCGTGAACGCGGCGGGCGACTGTTTCGCGCCGCCCCTCTTCGTGTTCCCGGGCCAGGAGCCGCTCGACGAGTCCTACCGGCGCAACTGTCCCCTCGGCAGCGTGTTCAGCGTCGAGGAGAGCGGCTGCGTCAGCACCGAGTCCTTCCTCGAGTACCTGCGGGTGCTGGTGGAGCTGCAGGCGCCGAGCGAGCAGCGgcccctgctgctgctcgtcaaCGCGCGACCCTACCACAACGACCTCAAGGTCATTCACTTCGCCAAGCTGCACCACGTGCACCTGCTCGGACTGCCCCAGCACAGCGCCCACATACTGCACCCCCTCGAGCGGGCCCTCATGCAGACCTTCGGCGCGGCCTACATCGAGGCCTGCAAGAAGTGGATCAAGTGCTGCCAGCCGGCCCAGCTCGCCCCGCGGGACGTGGCCGGTCTGGTCAACGAGGCCTACTGCTCGATATTCCGCAAGGATCTGGCCCAGTACGCCTTTCGCTGCACCGGTCTCTGGCCGATCAATCCCCACGCCATCGTCGGCCTGGATTACGGCGACGACATGGACGACGTGTTCGACGACAGCATCGCGTCCGCGGCCCCGGCCAGCAGCGACGATCTCATGTCGATACCGACGGTCGACGTCGCTCAGCAGCAAGAGcctctgcagcagcaacagctgccTCCCGAGAgaacgagctgctgcagcacgaCTACCTCGACTACGCCGAGCACCACCGCGACCACGCCGACGAGCCCGACCCTCTCGGATCTCTTTagatcgtcgacgtcgtcgttgcaGTCGTACTTGCCGTCCGCTTCGGTGATACGTCGAGTCGACGAGGCGGCCAACGAGGCCTCGACCTCGTCACTCGACGATTTCGTTCTCAAAGCCGTCGAGTCCGTCGCCGGCTTCTCCGTCATCAGGAGGATACACAGCGGCGAGGAGAGCAACTTCGACGTCAACATTTAA
- Protein Sequence
- MEYGEQLQEQNCISSFSAVEDELEEDEEKVEGLPDDIHIQEYEDVDAGPMKASGNNLFFGITEPESPEAQNMENEDELDYENNSNSANGHSRSEPIRSILVKLDSGVIKRLYRCNHCDQVFDSVRHCVKHMTTSHQTNRKYRVAYRCKTCGKLFRTKYGCENHIQGKHKNRTIRCRYCDFETSSVTYIKKHERNHLDDFEIRCDLCNKGFASKTVLERHMISHTGEKPFVCEKCNASYADKRSLTLHMTVHDPEGRPKRYTCDQCDYSSFWKNAVKTHMKVHTGAKVICDECGQAVASNYYLKIHKRIHSDEKPFTCDVCNKGFRQMKNLVVHRRTHTKVKPYKCHACDKSFSQNVWLKKHKCRSNSAAENHHVEVGGPAGNEAEMAEAEVDMDPDNIESINDNFQREKSAKSTEGGRQKPKQRGRWTEAGMQAAVSAILAKKMTLRKASLYFAVPKSTLASRMKSIQAGEQVDLAPQIGSFQKALCQRLESQLIARLKEQEARFLPLHKREFLKLAYDLAEHLQLPHKFNRSNKTAGKKFYYDFTLRHPELSVIADPSLTSPKTSAPISKTQVDQFFKVYQELVDRLGLSPGQIHSCEETSVLIHHRDIRRNVNVCKLTPSERGTVLLSVNAAGDCFAPPLFVFPGQEPLDESYRRNCPLGSVFSVEESGCVSTESFLEYLRVLVELQAPSEQRPLLLLVNARPYHNDLKVIHFAKLHHVHLLGLPQHSAHILHPLERALMQTFGAAYIEACKKWIKCCQPAQLAPRDVAGLVNEAYCSIFRKDLAQYAFRCTGLWPINPHAIVGLDYGDDMDDVFDDSIASAAPASSDDLMSIPTVDVAQQQEPLQQQQLPPERTSCCSTTTSTTPSTTATTPTSPTLSDLFRSSTSSLQSYLPSASVIRRVDEAANEASTSSLDDFVLKAVESVAGFSVIRRIHSGEESNFDVNI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01481896;
- 90% Identity
- iTF_01481896;
- 80% Identity
- iTF_01481896;