Tbra009690.1
Basic Information
- Insect
- Trichogramma brassicae
- Gene Symbol
- br
- Assembly
- GCA_902806795.1
- Location
- CADCXV010001338.1:181474-253774[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 2.6e-07 0.00037 20.1 0.0 9 38 222 250 222 255 0.87 2 4 8.3e-08 0.00012 21.7 0.1 9 37 289 316 289 321 0.90 3 4 5.8e-06 0.0082 15.8 0.1 2 39 978 1015 977 1019 0.87 4 4 2.7 3.8e+03 -2.4 0.0 29 41 1306 1319 1306 1320 0.77
Sequence Information
- Coding Sequence
- ATGTCGGAAAAAACGCAGCAACACCACCTGGTGCGACGCATCCAGCTCAAGGAGGACCCGTACTCCAAGGACGAAATCATGAAGCTGCTGCGCGAGAGCGAGCCCAACGCGACCCTGTGCTGCGAGTTCGGCGCGGTCGGCTGTCACAAGCCCATCCTGGCGGCGCGAAGCGCCCACCTCATGGAGCTCCTCAGACGCAATCCCTGCGCGCATCCGATCTTCTACGTGCCCGGGGCCAAGCACGACGAGCTCCAGGCCGTCGCGCACTTCATGTATCACGGCGAGGTCGACGTCGAGCTGTCGAAGCTGAGACACTTTTACAAGGCCGTCGAACCTCTGCAGATTCATGGCTTGCAATGGAAAAATACGAAAGAAAAATCTGAGGATAAGATTCGTGATTTATCAGTAAAATCTATGATGACCAAGGAAAAggataatgaaatttttcaagaacttAACTCAGAGAATGAGCATAATGATTCAAGATTAAATTCATTTGATCAATATCATGAAAAGAACCCAGATGTTTCTAGTTTCTGTCCAAATGTAGCAAAAGCATTTGATACTCCTcccataattatttttgactGGGGAAAACTTTTACAGGAAAAAAGTGAAGGCAATTCTAGACGATCGTATTCAACTGCTGAAAAACAAAGTGTAGTGAACGCCGTCAACAGTGGCATGTCTGGTGCGGAGGCTTCAAGAAAATATGATATACCATCAAGTACAGTTTACTCTTGGATTAAGAAGTCAGAAAGTCCGGATGCAAGTAGAAGAACTTCTATAAGTTCATCTGTGGATACCTCTTATTCTTCTGCCTCTGGAAGACGTTCGTATACACCAAGCGAGCGTCAAACTGTCGTCAATGCCATTGCTAATGGTATGAGTGGAGCTGAAGCTGCTAGGACTTATGGAATTCCTTCGAGTACTGTTTATTCATGGAAAAATTCTGTGCCAGCAGCCCCTACTACGAATTACAGCCGCCAATCAAATACCTCTTATGGTTCGTCGAATATTTCGTACGGAGCTTCAAATACTTCATATGGATCTTCAGCGAATCAATTCTCGCGTGCAGATGCAGAAGAAACTGCTTGTGAGACTACTGCGGGCACATGTAAACAAGTCGCAGAAGCCTCGGTTAACCGGTGTCATcgagtttttcatcaatctAGTACGAAATTCATCCGCTCGGCGGCTTTTACATGGCATTTCGTGGCGCTGCCGGCGGCGCCGCGAATCCTGCGCCTAGGCCCTAGCCGCTTACAGCACTTTGATCTCGTCCCGATGGCAGTTCATGAAGTtcaagaaaggaaaaaaaaacgtgctctcgtTCATCAGGCTCACGCACCCGTAGCAGCATCGAAGACTGTGTGCCCCAAGATCTCTGACTACTGCAAAATTAAATCCACACAGAGAGGAGGATTTGAGGAGGATTTACAACTCATTCGGTCTAAGCCGTTAAAATTCAGCATTAACAAttgggcacacacacacgagccaGCAACAGCAAGAGCGGCGTTAGAGCAAGAAGACTTGTGTATTATACgctatggaaaaatttttgttcaacgCCCTGtgtcgtttaaaaaaaaaaaaaaaaaaaagaagtcatGCCCGGCTTATACGGCAACGTGTCTTACAAATTTCGAAACGAACGAGACAGGCGCCGCAGCCGCGCAGAGGGTCGAAGACGTGAACGTCAACGACGACTCAAGCAATCCATCGTCGCCATCGCCATCCCTATCGTCAGCGTCTTCAACTTCGTCCGAAGATAAGATGGAGATCGCTCACGCCCCGTCGTCACCGCTGGCCATGAACaacgagcagcagccacagctaTCGGCCCAGCCGCAGGCTGCACccccacagcagcagcaacatcagcagGTTGCTCCCCAATCACCCCAGCCCCAGGTACAGcatcaccagcagcagcaacagttgcaccatcaacagcagcagcagcatcaatcTGCCCCTGCTAATACCAGCTCTACTGGCATGCAGCAATACTGCGTCTCCTGGAATTCCTACGCGTCTCATCTGCAAGGAGCGTTTCCTAAGCTGCTGAGCAGCGAGCAGTTCGTAGACGTAAGCCTGGCCTGTGACGGGGGTAGTTTCAAGTGCCACAAAGTGGTACTCTCCGCTTGCAGCGAGTACATGGAGCGAATTCTGCTAGATTTGCCCTGCCAACACCCCGTCATTTTCATGACCAACATGGAGTTCTGGGAACTCCAGGCGCTGATTCAGTTCATGTACCACGGTGAAGTTTACGTTGAAGAGGCAAAACTTAGACAACTGTTGAAGGCTGCCGATGCTTTACAGATTCGTGGCCTGTCTAACAAGAATACCGATTTGAATGGAGCTAGAGATGATCAAAACACACACAACAACATCCACCAACAGAATGCTCATCACAGTACACCAAAAGTAGGTACGAGCAACGCAGCTTCCACCCCATCAGCTTCCAATGCCTCGTCCACCGCTGGAGATTTCCCTCAGGCTGATGACAACGGTGACAACAGTGCTGATGGATCTGATTGCGATTTGCAAAACATAATTCCAACCTTGCCATCCGGAACTACTGCTGTTCCAACTTCAGAGAACTTAAGCTATGACACTGAGCCAATCCAAGAAGATATGCATCATTCTTACGATATGAGTCTTGCTGGTGGTTCTTGTGAAACATCTGTTGTAGAAGGCCCTGGTACAGTTAAACTTGAGCCTGATGATCATCATCATAACATGATGGCATACAATGATAAGAACAACTATTCTATCAACATGGTTCCAATGAATGCCTCATGCCAACCAAGTAGTCCTTTCCCTGCTATAGAAGGTAATGACTTCGTTGGTGccaaacataaaaatatcCAAAATGGTCAGAACGGTCATAACTTaagTTATCAAAAACGTCAACGTCGTTCAGAAGCTGAACTCAAACTAGCTGCAGATCTTGTATCTCGTGGAATGACGTTCCAAGTCGCCTCAGAACAATACAGTATTCCCATAAGCACGATCCGGTTCTACATGGCTCGCAAAGTGTATCAACTCGTATTACTCGATTCGGCCCATCGACATTGCTATCTCATTAAGAAACGATTTGCATTTAATCGCTCTCACGTGCGATACGAtgagaaaatgagaaaaatgaaaaattgcatacgAGTGCAAtcgatgatgataatataCGACGacggtatgtatATCGCATCAATGATAACAAGAAGAAACATATTAACAGGAGCAGAGCTCGCGGAGACTTTATTTCACCTGGTGATAATTGTAGGCAGTTTTTTCGTCTCCAGTTTTCTTATGTTTCATGAGAATAAGatcatgacgatttttataaatttcttcgACGAATATAATCGTTTAAAGGACGCtaaccaaaaaataattacaattgaaaCTATGCAAAAGGGATATCAGATTGGTACGGTGCTTGGATcactgcgtggcataagttcacatttatggcacgcttttcggtggcataagtcgcacattctggcaccgcggcgttcgcatcacactcgcgtacgctcgtgcgctaacctcactttgcggtaccagaaaATGGTTATTCTGctgaagaaaaacacatctCTTCAAGCTCTGAAAATGTTCTTGACTTTCTTGTTATGTAAATTGATTCTTATGATTATATGCTATCCCAGCCAACAGATGAAAGAAGCAAgtgaaaatattcatattgCATGTTATAGCACTGGTTGGTATGAGTTTAAATCCAAAATTAGATATTTACTGCTACTGATGATGGTTCGAGCCTCGCGACCTTGTTGCTTCATGGCCTGTAGCGGATTTCCGGTTAATTTCAGTACGGTTACATTCaataagaaaaaaTCTCGATACAACTCGCAACCGATCCACAAGTGCGTGACAGTCCACCCACGCTCTACCCTTTCAAATTTCTGTATTGAAAGAGAGTATAAAGATgtaagatttttaataaaaagaagaaaaattttagatcTAGAAGATTTTACTGACTCGTTATTTCAATTAATAGTTTTGTCAGGCACAATTTCAgcatatttaatatttattttacaagaaaaaaaaGTTCAGATGATGTTTGATCAATTCTTTGCAAAGTTACTGATGTTCAGTgatggaaatgaaaaaatatttattttgaaaacaatGCAAAAAGGTTACCGTTCCGGTATGGTGCTTGCCGCCTATCAGTTGGATTGCCGGACCTGGTATTatcatgaattttcaaactgTAGCTATTGTAAGTTTGAAGATGTTAACTCTTTTGAACTAAAAACTATTGATACGTATTTTATTGAAGtaatcctgcTAACTAACCGTCATCGTGTGCGCGCTACTCGATGGTCGAGTAGCGATTCACGCGATAAACGTGCAAATCGCCCTCCACGATGCTCGAGTAAACAGTCTCGCACCAATCAGAGTGGACCCTACTCGAATTATGATGAGACGATACTCGATATCGATGTTCCTAAACTCGAGAACGTGCGAGTATGTGCGAAAAGATTGTCGAGTGAGAAGCGCTCGTGGTCCGTTTCAGTGTACAAAGAAAATTATTGCAGTGAATGGTATCAGTTGAAACCAAAAAAcagattaatttttctcatgaTTATGATGAGAACATTGAAACCTTGTGGCTGGGTCGCTGGTCCCA
- Protein Sequence
- MSEKTQQHHLVRRIQLKEDPYSKDEIMKLLRESEPNATLCCEFGAVGCHKPILAARSAHLMELLRRNPCAHPIFYVPGAKHDELQAVAHFMYHGEVDVELSKLRHFYKAVEPLQIHGLQWKNTKEKSEDKIRDLSVKSMMTKEKDNEIFQELNSENEHNDSRLNSFDQYHEKNPDVSSFCPNVAKAFDTPPIIIFDWGKLLQEKSEGNSRRSYSTAEKQSVVNAVNSGMSGAEASRKYDIPSSTVYSWIKKSESPDASRRTSISSSVDTSYSSASGRRSYTPSERQTVVNAIANGMSGAEAARTYGIPSSTVYSWKNSVPAAPTTNYSRQSNTSYGSSNISYGASNTSYGSSANQFSRADAEETACETTAGTCKQVAEASVNRCHRVFHQSSTKFIRSAAFTWHFVALPAAPRILRLGPSRLQHFDLVPMAVHEVQERKKKRALVHQAHAPVAASKTVCPKISDYCKIKSTQRGGFEEDLQLIRSKPLKFSINNWAHTHEPATARAALEQEDLCIIRYGKIFVQRPVSFKKKKKKKKSCPAYTATCLTNFETNETGAAAAQRVEDVNVNDDSSNPSSPSPSLSSASSTSSEDKMEIAHAPSSPLAMNNEQQPQLSAQPQAAPPQQQQHQQVAPQSPQPQVQHHQQQQQLHHQQQQQHQSAPANTSSTGMQQYCVSWNSYASHLQGAFPKLLSSEQFVDVSLACDGGSFKCHKVVLSACSEYMERILLDLPCQHPVIFMTNMEFWELQALIQFMYHGEVYVEEAKLRQLLKAADALQIRGLSNKNTDLNGARDDQNTHNNIHQQNAHHSTPKVGTSNAASTPSASNASSTAGDFPQADDNGDNSADGSDCDLQNIIPTLPSGTTAVPTSENLSYDTEPIQEDMHHSYDMSLAGGSCETSVVEGPGTVKLEPDDHHHNMMAYNDKNNYSINMVPMNASCQPSSPFPAIEGNDFVGAKHKNIQNGQNGHNLSYQKRQRRSEAELKLAADLVSRGMTFQVASEQYSIPISTIRFYMARKVYQLVLLDSAHRHCYLIKKRFAFNRSHVRYDEKMRKMKNCIRVQSMMIIYDDGMYIASMITRRNILTGAELAETLFHLVIIVGSFFVSSFLMFHENKIMTIFINFFDEYNRLKDANQKIITIETMQKGYQIGTVLGSLRGISSHLWHAFRWHKSHILAPRRSHHTRVRSCANLTLRYQKMVILLKKNTSLQALKMFLTFLLCKLILMIICYPSQQMKEASENIHIACYSTGWYEFKSKIRYLLLLMMVRASRPCCFMACSGFPVNFSTVTFNKKKSRYNSQPIHKCVTVHPRSTLSNFCIEREYKDVRFLIKRRKILDLEDFTDSLFQLIVLSGTISAYLIFILQEKKVQMMFDQFFAKLLMFSDGNEKIFILKTMQKGYRSGMVLAAYQLDCRTWYYHEFSNCSYCKFEDVNSFELKTIDTYFIEVILLTNRHRVRATRWSSSDSRDKRANRPPRCSSKQSRTNQSGPYSNYDETILDIDVPKLENVRVCAKRLSSEKRSWSVSVYKENYCSEWYQLKPKNRLIFLMIMMRTLKPCGWVAGP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01481593;
- 90% Identity
- iTF_01481593;
- 80% Identity
- iTF_01481593;