Tbra009177.1
Basic Information
- Insect
- Trichogramma brassicae
- Gene Symbol
- bab2
- Assembly
- GCA_902806795.1
- Location
- CADCXV010000080.1:478648-505799[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 5 5.1 7.2e+03 -3.3 0.0 5 14 30 39 29 40 0.83 2 5 9e-13 1.3e-09 37.5 0.0 1 39 407 446 407 450 0.90 3 5 2.8e-12 3.9e-09 36.0 0.1 2 39 462 499 461 502 0.94 4 5 1e-18 1.4e-15 56.6 0.0 2 45 517 561 516 561 0.97 5 5 1.2e-17 1.8e-14 53.1 0.0 1 42 568 610 568 611 0.97
Sequence Information
- Coding Sequence
- ATGGATAGTAAAATTATTCGCACGCAAGTGCAGCAGCcaccgacgcgcgcgcgcgatcattGCGGCTCGCTTGTTTTGGCTTTTACTTTTCTCCGCGCGCTACAAGAAGTGCGCGAGGAGGTTCGATCTCGACAACAGCACGATCCTCGCGCTTATGAGCGTGCGTCGACGTCGAGGAGGATTATACGTGCcggAGGGATGACCGGGCAGCACTACTGCCTGCGCTGGGACAATTACCAGTCAAACATGACGTCGGTGTTCCATCAGCTGCTGCAGAACGAGGCCTTCGTCGATGTCACCTTAGCGTGCAACGAGGCCTCCCTCAAGGCCCACAAGGTCGTTCTGTCGGCGTGCAGCTCGTACTTtcagaagctgctgctgtccaATCCGTGCACGCATCCGACCATCATCATGCCCCAGGACGTGTGCTTCAATGATCTCAAATTCATCATCGAGTTCGTCTACAAAGGCGAGATCGACGTGACCCAGGCCGAACTGCAGAGAGGGTCGATATGTAGCGGAGTTTGTGTCTGTGCCATCGTTGCAGCCGCACACTCactcgcacatacatatacatacacacacatagagcagccacccacgcacacacgtaaACACGTTGGTCTGGCGTGCGCGACGTCGAGCATAGAGCTTTTAACACGGAGGGCGAGGCCTACGCGCGAAAgctcgtcgcagcagcagcagcagctacTGCATGGACACGACCGGCCGAGCCAACGTGCCCGCCGCAGCGAGTACACCACTAGTCGTGCTCGACTCCAGCCCGTCGTCcatcatcaacaacaacaacaacaacatcaacaagagcaacaacaacaacaacgagaaaaaattaacgacgACCAACGGGGCCGCAGCCGGCGCCGCCGATCGCCCAGACGACAGCAAccgcaggagcagcagcaacagcagcggtgCCAGTCCCAGCAGCATATCCAGAACTGCGACAACGACGTGAAGGTCAAGTTCGAGACCCTGCAGACGATGGACTCGTCGGACACGATCGACATCGACAGCCACATGTCCGACCGGGCGAGCGTCAGCTCCAAGGCCGACGACAACATGATGATGATCACGCCGGAACTGCTGGGCCTTATGCCCTCCGGCAGCTCGATACACTCGGACTCGCCCGGCGGCGAGAACAACTCGCGAAATCACTCGCAGTCCGGCTCGCATCATCACGGATCCAAGTCCTGGACCCAGGAGGACATGGACGCCGCGCTCGAGGCTCTCCGAAATCACGACATGAGCCTCACCAAAGCTTCTGCCACCTTCGGGATTCCATCGACGACGCTGTGGCAGCGGGCCCACAGGCTCGGCATCGACACGCCAAAAAAAGACGGACCGACCAAGTCGTGGAGCGATGAGAGCCTCAACAACGCCCTTGAAGCTCTGCGCACGGGCACGATATCGGCCAATAAAGCCTCTAAAGCCTTCGGCATACCTTCGAGTACTCTGTACAAAATAGCCAGGCGAGAAGGCATAAGATTGGCCGCGCCCTTTAACGCGAGTCCCACGGCTTGGTCCCCGGCTGATTTGGACAGAGCACTCGAGGCAATCCGATCCGGCCAGACCTCCGTGCAACGAGCTTCTACCGAGTTTGGCATACCTACGGGTACGCTTTACGGGCGTTGCAAGAGGGAGGGTATTGAGTTGAGCAGGAGCAATCCTACGCCCTGGAGCGAGGACGCCATGACCGACGCCTTGGAGGCCGTGAGATTGGGGCACATGAGCATCAATCAAGCGGCGATACACTACAATCTACCCTACTCATCGCTCTACGGGCGCTTCAAGCGCGGCAAGTACGAGGAGCCGGTCATGTCGCAGAACGAGATGTCCCAGGACGGATCGTCGCAGCACTTTCACCATCCGAGCCCGACGCAGAACAATCACACGTCGCCGCTGCCCGAGCAGATGACCTACCAGGGCAGCTGA
- Protein Sequence
- MDSKIIRTQVQQPPTRARDHCGSLVLAFTFLRALQEVREEVRSRQQHDPRAYERASTSRRIIRAGGMTGQHYCLRWDNYQSNMTSVFHQLLQNEAFVDVTLACNEASLKAHKVVLSACSSYFQKLLLSNPCTHPTIIMPQDVCFNDLKFIIEFVYKGEIDVTQAELQRGSICSGVCVCAIVAAAHSLAHTYTYTHIEQPPTHTRKHVGLACATSSIELLTRRARPTRESSSQQQQQLLHGHDRPSQRARRSEYTTSRARLQPVVHHQQQQQQHQQEQQQQQREKINDDQRGRSRRRRSPRRQQPQEQQQQQRCQSQQHIQNCDNDVKVKFETLQTMDSSDTIDIDSHMSDRASVSSKADDNMMMITPELLGLMPSGSSIHSDSPGGENNSRNHSQSGSHHHGSKSWTQEDMDAALEALRNHDMSLTKASATFGIPSTTLWQRAHRLGIDTPKKDGPTKSWSDESLNNALEALRTGTISANKASKAFGIPSSTLYKIARREGIRLAAPFNASPTAWSPADLDRALEAIRSGQTSVQRASTEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMTDALEAVRLGHMSINQAAIHYNLPYSSLYGRFKRGKYEEPVMSQNEMSQDGSSQHFHHPSPTQNNHTSPLPEQMTYQGS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01481629;
- 90% Identity
- iTF_01481629;
- 80% Identity
- iTF_01481629;