Basic Information

Insect: Tribolium madens
Gene Symbol: -
Assembly: GCA_015345945.1
Location: JADDYM010000007.1:9503650-9505720[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 0.08 5.4 7.6 1.1 1 23 79 101 79 101 0.98

2 18 0.031 2.1 9.0 4.0 1 23 110 132 110 132 0.99

3 18 0.43 29 5.4 2.9 1 23 141 163 141 163 0.98

4 18 0.02 1.3 9.6 1.9 1 23 173 195 173 195 0.98

5 18 0.034 2.3 8.8 3.0 1 23 203 225 203 225 0.98

6 18 0.14 9.3 6.9 3.7 1 23 234 256 234 256 0.98

7 18 0.22 15 6.3 1.1 1 23 265 288 265 288 0.96

8 18 0.78 52 4.5 2.9 1 23 297 319 297 319 0.96

9 18 0.11 7.7 7.2 0.2 1 23 325 347 325 347 0.94

10 18 0.21 14 6.3 1.1 1 23 356 378 356 378 0.97

11 18 0.0087 0.58 10.7 4.5 1 23 387 409 387 409 0.97

12 18 0.24 16 6.2 1.6 1 23 417 439 417 439 0.97

13 18 0.077 5.2 7.7 2.4 1 23 448 470 448 470 0.98

14 18 1.9 1.3e+02 3.3 2.7 1 23 479 501 479 501 0.94

15 18 1 69 4.2 1.4 1 23 539 561 539 561 0.93

16 18 0.0027 0.18 12.3 0.4 1 23 567 590 567 590 0.97

17 18 0.0058 0.39 11.2 1.2 1 23 598 620 598 620 0.99

18 18 0.34 23 5.7 1.7 1 23 629 652 629 652 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	0.08	5.4	7.6	1.1	1	23	79	101	79	101	0.98
2	18	0.031	2.1	9.0	4.0	1	23	110	132	110	132	0.99
3	18	0.43	29	5.4	2.9	1	23	141	163	141	163	0.98
4	18	0.02	1.3	9.6	1.9	1	23	173	195	173	195	0.98
5	18	0.034	2.3	8.8	3.0	1	23	203	225	203	225	0.98
6	18	0.14	9.3	6.9	3.7	1	23	234	256	234	256	0.98
7	18	0.22	15	6.3	1.1	1	23	265	288	265	288	0.96
8	18	0.78	52	4.5	2.9	1	23	297	319	297	319	0.96
9	18	0.11	7.7	7.2	0.2	1	23	325	347	325	347	0.94
10	18	0.21	14	6.3	1.1	1	23	356	378	356	378	0.97
11	18	0.0087	0.58	10.7	4.5	1	23	387	409	387	409	0.97
12	18	0.24	16	6.2	1.6	1	23	417	439	417	439	0.97
13	18	0.077	5.2	7.7	2.4	1	23	448	470	448	470	0.98
14	18	1.9	1.3e+02	3.3	2.7	1	23	479	501	479	501	0.94
15	18	1	69	4.2	1.4	1	23	539	561	539	561	0.93
16	18	0.0027	0.18	12.3	0.4	1	23	567	590	567	590	0.97
17	18	0.0058	0.39	11.2	1.2	1	23	598	620	598	620	0.99
18	18	0.34	23	5.7	1.7	1	23	629	652	629	652	0.96

Sequence Information

Coding Sequence: ATGAGTAAAGAAAATGAACAAAATTACGATTACAACAACATTTTTGTGAAAACGGAGAAACTCAGCGATACGGAAATCGAGTGTGAGGAAGAAAGCCCCAATTGTGATATAATAAAAGTAGAAATAAAAGAGGAATGTCCTGATGATCCAAGGTATTTGAGTTGTGTAGAGACCCCCGAGACTGAATTTATCGACAGTGTGAAGAATGAGCCCACAAGTGAGGAAATCAAGAATTTCCAATGCACGATATGTGCTTTCAAAACCAAATGGAAAAACAGTCTTCGCGGTCACATGAAGATCCACAGCTCCCCCGAATTCGTCAAACTATACAAATGCAAAAAATGTACGTATAAAACCAAATGGAAAAACTATCTAGCTAAACACACAAGGATTCATAGCGCCCCCGATTGCCTTGATATGTATAAATGTACAACCTGCAGTTTTCAAACAAAATGGAAAACCAGTCTTAAAATGCACCAATCGATTCATACAATCAAAGACACGAATTTAAAGATTTATAAATGTACAAAGTGCCCCTTTGAATCCAATTGGAAACAGTACTTGAACCGACATATAAAATCACATTTACCGGAAAGCTTGCAAAAGCACAAATGTCCAGATTGCAGTTTCCAAACCAAATGGAAACAGTATTTAAAAGAACACATGAAAATCCACTCGGCCCCCAATACTATAAAACAGTACCAATGCGACAAATGCCAATTTACCACACGCTGGAAACAATATTTCAAAGAGCATGTGAGAAGACACAGTTCACCGAAAAAAAATAAAATTTACAAATGCACAGTTTGTATTTTTGAAGCCGACTCGAAATACGCCCTCACACACCACTTGAATAAAGTCCACGACATTGTCGACAAAATCGAATATTTCCAATGTTCCGAATGCATGTTTAAAACCAAATGGAAACAATACTTGAAACGTCACATTAAACTACACGACGAGAGCGCCAGCTACAAATGCCCCGAGTGTCCCTTTGAAACCAGATGGAAAAATAGTCTACTCGGCCACCAAACCATCCACAACCAATCAAAAACCATCGCTTTGTACCATTGCAACATTTGTCCATTTAAAACCAAATGGAAGAATAGTCTCGCTGGTCATATGACCATCCACAACCCACCTGATTCGTCCAAAATGCACCATTGTCCCGAATGCCCCTTCCAGTCCCGTTCGAAAAACTACATGAAACGACACATTAAAATCCATACTGGTGAAGAGGAGGAGACATTTTCTTGTCCCGAATGCCCTTTCCAAACCAAATGGAAGCAATACTTTAAGGAGCATGTCAAGAAACATGAATACCCGGATCAAATTCCGGTGTTTAAATGCCCGGAGTGCGAATTCACGACTAAATGGAAACAATACTTTCGCGAGCATGTTAAAAAACACCAAAACCCGGAAATGCTCAAACAATACGCATGCGAGGAATGCGATTTTACCACCACTTGGCGTAAATGCTACCGCGATCATGTGAAGCAGCACAGCGTCCCTGATAAGGTCTACAAGTGTACTAGTTGTAAGTTTAAGACGAAATGGAGGCAGTATTTTCGCGAACACGTCAAAAAACATACTAATCCGGATTTGGTCAAGCTATACAAATGCACGATTTGCTCGTTTATGACGATATGGAAGCAGTATTTCAAGGAGCATGTCGAGAGACATAATTCAACACAGACTTATAAATGTGCCAAATGCGAGTATGAAGGTGAGTCGAGGTACTACTTGGCCAAGCATATGAAAGAAGTGCATTGTCAAAGTGAAGTCAAGACGTATAAATGCGAGAAATGTGGATTTACGACTAAGTGGAAAGAGAGTATCAAGTCACACTTAAGGGTGCATGCGAATTCGAAAAATGCGAAAATTTATAAATGTACAGTTTGTATGTTTGAAACAAAATGGAAGAGTAGTTTTAATTCTCATATGAAGATGGTGCATAGTAAACCCGAGGTCCAGAAGAAGTATAATACGAGACAGAGCAAGACTGTCGAAGAAATGTGCAATTGA
Protein Sequence: MSKENEQNYDYNNIFVKTEKLSDTEIECEEESPNCDIIKVEIKEECPDDPRYLSCVETPETEFIDSVKNEPTSEEIKNFQCTICAFKTKWKNSLRGHMKIHSSPEFVKLYKCKKCTYKTKWKNYLAKHTRIHSAPDCLDMYKCTTCSFQTKWKTSLKMHQSIHTIKDTNLKIYKCTKCPFESNWKQYLNRHIKSHLPESLQKHKCPDCSFQTKWKQYLKEHMKIHSAPNTIKQYQCDKCQFTTRWKQYFKEHVRRHSSPKKNKIYKCTVCIFEADSKYALTHHLNKVHDIVDKIEYFQCSECMFKTKWKQYLKRHIKLHDESASYKCPECPFETRWKNSLLGHQTIHNQSKTIALYHCNICPFKTKWKNSLAGHMTIHNPPDSSKMHHCPECPFQSRSKNYMKRHIKIHTGEEEETFSCPECPFQTKWKQYFKEHVKKHEYPDQIPVFKCPECEFTTKWKQYFREHVKKHQNPEMLKQYACEECDFTTTWRKCYRDHVKQHSVPDKVYKCTSCKFKTKWRQYFREHVKKHTNPDLVKLYKCTICSFMTIWKQYFKEHVERHNSTQTYKCAKCEYEGESRYYLAKHMKEVHCQSEVKTYKCEKCGFTTKWKESIKSHLRVHANSKNAKIYKCTVCMFETKWKSSFNSHMKMVHSKPEVQKKYNTRQSKTVEEMCN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -