Tmad007889.1
Basic Information
- Insect
- Tribolium madens
- Gene Symbol
- -
- Assembly
- GCA_015345945.1
- Location
- JADDYM010000011.1:667993-670140[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 1.1 76 4.0 0.7 2 23 6 27 5 27 0.94 2 20 0.052 3.5 8.2 1.3 1 20 79 98 79 103 0.86 3 20 0.044 3 8.5 4.4 1 23 138 161 138 161 0.97 4 20 0.048 3.2 8.3 0.8 1 23 167 190 167 190 0.96 5 20 0.028 1.9 9.1 4.9 2 23 198 220 197 220 0.93 6 20 0.11 7.3 7.2 1.1 1 23 229 252 229 252 0.95 7 20 0.0034 0.23 12.0 2.3 2 23 258 280 257 280 0.93 8 20 0.0011 0.071 13.6 5.2 1 23 287 310 287 310 0.96 9 20 0.00076 0.051 14.0 2.6 1 23 317 340 317 340 0.95 10 20 0.00082 0.055 13.9 2.1 1 23 347 370 347 370 0.93 11 20 0.00024 0.016 15.6 4.5 1 23 377 400 377 400 0.96 12 20 1.4 94 3.7 0.9 1 22 407 428 407 430 0.80 13 20 0.055 3.7 8.2 4.9 1 23 437 460 437 460 0.97 14 20 0.49 33 5.2 3.8 1 23 466 489 466 489 0.98 15 20 0.02 1.4 9.5 3.5 1 23 497 520 497 520 0.94 16 20 0.31 21 5.8 4.1 1 23 537 560 537 560 0.95 17 20 0.049 3.3 8.3 0.4 1 23 566 589 566 589 0.95 18 20 0.02 1.3 9.5 5.0 2 23 597 619 596 619 0.93 19 20 0.23 16 6.2 1.2 1 23 628 651 628 651 0.94 20 20 0.0045 0.31 11.6 1.7 2 23 657 679 656 679 0.91
Sequence Information
- Coding Sequence
- ATGGAACTGTATCTCAAATGCGACAATTGCCCATTTAAGACAAAACTCTTATCTAAGATAAGAAGTCACGTGACAATTCACGCAGATGACCAAAAAAGATTATTTAATTGCTCAAGTGGTAGCCTTGAACCTTACAAGTGTTACAAATGTAATACATTTGAGACACAATTTTTGTCACAACTGAAACATCACATCGCTCAAGGTCATACATCACAACATGTCAAATCCACAACCTACAAGTGTCCCAAATGTGATTTCAAGTCGTTTTCGAAATATTTGGTTTTGAGACATGTTATTTTTACCGAACATCAAGGAAAGAAATACACAAATTATGATAACAAGGCTTCACATTTTGACGATTTGAGAAGACACGTGATTCGAAGACATACAGAAGGTTCCAAGATTCAGTGGTTTAGATGTAAACATTGTCCGTTTAAGGGCAAACTCAATCGCACTTTGACACGACACTTAATAAAAAAACATGGCATTAACTTTTGGTATCCGTGTAAACTTTGTGATTACAAGGCGAAAAGGAGTGACATTTTGAGACAACACGAGAACAGACGACACAAATCCAAACTCCAGTTGTGGAGTTGTGATCATTGTGATTATAAATGTAAATTAAAAAAAACATTGACACAACATATAGTGTCAAAGCACTCGTTGATGTGTGATTTTGAGTATTTTCAATGTGACCAATGCCAATTCAAGGCGGCCTTTAAAAGTACATTGGACAAACACGTGACCATTAAACATGGCCTCGAAAGGCTTAAGTGCGACCTATGCGATTTCAAAACAAAAAACAAGAAATACTTACAAAGACATTTCATTGTTAAACACACTGAAAATCCAAAAATGTTCAAATGCCACCAATGCGATTACGAGACAAAATACAAGCACAACTTACAAACACATGTCATCATTAGACACACTGAAAATCCAAAAATGTTTGAATGCGACCAATGCGATTACAAGTCAAAATACAAGCACAACTTACAAACACATGTCATCATTAGACACACTGACAATCCAAGAATGTTCAAATGTGACCAATGTGACTACAAAACAAAGTACAAGCAGGAATTACGAAAGCATGTTGTTGTCAAACACGCTGAAAATCCAAGAATGTTCAAATGCGACCAATGCCATTACAAATCAAAAAACAAGTACAACTTACAAAAACATGTCATTGTTAAACACACTGAAAATCCAAGAATGTTCGAATGCGACCAGTGCGATTTCAAAACAAAACACAAGCAGGTATTACCAGAACATGTCATTGTTAAACACACTGAAAATCCAAAAATGTTCAAATGCGACCAATGCGATTACATAACCCATCTCAAGAATTATCTCACGAAACACCAAAAGTATCAACATAGCAACGTTCCGTTATTCCAGTGTGCCAGTTGTGACTTTAAAACAAAATTAAAATGCAGTTTACTCTATCATTTGCGTTCACTCCATTCCACTGATTCTCAAAAATCATATCACTGCAACGAATGTGATTTGCAATTCACAACAAAGTTTCAAAAGGTAACACACACAAAAGAAGAACATTTGAAGAACGTGATTTGGAAACATACAGAAAATTCAAAGATCCAGTGGTTTAGATGTGAATATTGTCTATTTAAGGGCAAACTCAAACACACTTTGAGACGACACTTGATGGAAAAACATGACATTAACTTTTGGTATCCGTGTAAACTTTGTGATTACAAGGCGAAAAGGAGTGACATTTTGAGACAACACGAGAACATACGACATAAATCCAAACTCCAGTTGTGGAGTTGTGATCATTGTGATTATAAATGTAAATTTAAAAAAACATTGACAGAACATATAGTGTCAAAGCACTCGTTGATGTGTGATTTTGAGTGCTTTCAATGTGACCAATGCCAATTCAAGACGCCCCTTAAAAGTAAATTGGACACACACGTGACTATTAAACATGGCCCCAAAAGGCTCAAGTGCGACCAATGCGATTTCAAGACAAAATACAAGAAATACTTACAAAGACATGTCATTGCTAAACACACTGAAAAGCAAAAAAGTTTGAAATACGACCAATGCGATTTCAAAACAATGTTAAGGCAACGAATGTATAACGTTGTTAAAGGAGTGTTAAACGTTGTTAAACGTTATTGA
- Protein Sequence
- MELYLKCDNCPFKTKLLSKIRSHVTIHADDQKRLFNCSSGSLEPYKCYKCNTFETQFLSQLKHHIAQGHTSQHVKSTTYKCPKCDFKSFSKYLVLRHVIFTEHQGKKYTNYDNKASHFDDLRRHVIRRHTEGSKIQWFRCKHCPFKGKLNRTLTRHLIKKHGINFWYPCKLCDYKAKRSDILRQHENRRHKSKLQLWSCDHCDYKCKLKKTLTQHIVSKHSLMCDFEYFQCDQCQFKAAFKSTLDKHVTIKHGLERLKCDLCDFKTKNKKYLQRHFIVKHTENPKMFKCHQCDYETKYKHNLQTHVIIRHTENPKMFECDQCDYKSKYKHNLQTHVIIRHTDNPRMFKCDQCDYKTKYKQELRKHVVVKHAENPRMFKCDQCHYKSKNKYNLQKHVIVKHTENPRMFECDQCDFKTKHKQVLPEHVIVKHTENPKMFKCDQCDYITHLKNYLTKHQKYQHSNVPLFQCASCDFKTKLKCSLLYHLRSLHSTDSQKSYHCNECDLQFTTKFQKVTHTKEEHLKNVIWKHTENSKIQWFRCEYCLFKGKLKHTLRRHLMEKHDINFWYPCKLCDYKAKRSDILRQHENIRHKSKLQLWSCDHCDYKCKFKKTLTEHIVSKHSLMCDFECFQCDQCQFKTPLKSKLDTHVTIKHGPKRLKCDQCDFKTKYKKYLQRHVIAKHTEKQKSLKYDQCDFKTMLRQRMYNVVKGVLNVVKRY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -