Tmad004642.1
Basic Information
- Insect
- Tribolium madens
- Gene Symbol
- -
- Assembly
- GCA_015345945.1
- Location
- JADDYM010000071.1:28357-33131[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 4.4 3e+02 2.2 0.9 1 12 55 66 55 74 0.76 2 19 0.0064 0.43 11.1 3.1 1 23 122 145 122 145 0.94 3 19 0.021 1.4 9.5 2.6 1 23 154 177 154 177 0.93 4 19 6.1 4.1e+02 1.7 9.1 1 23 184 206 184 207 0.94 5 19 0.0076 0.51 10.9 3.1 1 23 213 236 213 236 0.96 6 19 3.5 2.3e+02 2.5 3.4 1 23 247 269 247 270 0.92 7 19 0.00046 0.031 14.7 1.5 1 23 279 302 279 302 0.97 8 19 0.0012 0.078 13.4 0.4 2 23 311 333 310 333 0.94 9 19 0.0071 0.48 11.0 2.0 2 23 340 362 339 362 0.96 10 19 0.00019 0.013 15.9 1.4 1 23 371 394 371 394 0.97 11 19 1.7 1.1e+02 3.5 2.1 1 17 402 418 402 421 0.80 12 19 0.00026 0.017 15.5 1.4 2 23 433 455 432 455 0.95 13 19 0.07 4.7 7.8 7.7 1 23 464 486 464 487 0.96 14 19 0.00095 0.064 13.7 3.1 1 23 496 519 496 519 0.95 15 19 0.03 2 9.0 1.5 1 23 528 551 528 551 0.95 16 19 0.4 27 5.5 0.8 2 23 588 610 587 610 0.94 17 19 0.00067 0.045 14.2 3.1 1 23 616 639 616 639 0.96 18 19 0.0012 0.078 13.4 1.0 1 23 648 671 648 671 0.97 19 19 0.00047 0.032 14.7 2.0 1 23 680 703 680 703 0.95
Sequence Information
- Coding Sequence
- ATGGAAAGCAACTTAGTTGGTGAAGTAACCTTCAACTGTGATCAAACCGTTGAAACGTTCAAGTGTAATCTGTGTCATTTTAAAACAGATTTGAAGACTGTTTTGCATTATCACAGATACTTGCATCATAATTCGGAAGAGACACGTAGAAAAATTGCAAAATACAAATGCCGCAAGTGCGATTTTACAACATATTCAGTTTTATTATGGTTCAAACATAATGTTAGAAAAAACTTGGATATTAAGGATTTTACTAAAGTCTACAGATTTGAATGCACATGTTGTCCTTTCAAAGCTGTTTATAAGGTGTCATTGCATCTCCACATCCTTAATAAACACACTTCATCTGAACAAATCACATGGTTTCAATGTGAACATTGTGATTTCAAAACTAAACTAAAGGCATCATTAATAAGACACACCAGTTTAAAACACACACTTATTGATGAATCACAGTGGTTCAGTTGTGATTTGTGCAAATATAAAACACAACAAGAAACGAATTTAAAAAGACACAAAATTTACAATCATTCGCAAGATATAGCCATGTATGAGTGTACGAAATGTACCTACAAAACAAAACATCGAGGTTCATTGAAATGTCATGAATTAAGACATCATGATGATGCTCAGTGGTACAGTTGTGATTACTGTAACCACCGATCGAAAATCAAGAAAGATTTGTTGAGGCACATTCAATTACGACACACTGAAAATACTTCGAAAGCGAGAAATGAGTTCTCTTGCACTTTCTGTACGTACAAAACTTTGTATCAGCAGTCTTTAAAGCAACACATCGTTGGACATCACACTGCACCTGAAGAAATCCAATGGTTTGAATGTGATCAATGCGACTACAAGGGAAAACGCAAAGACTATCTTAATGTTCACAAAAAAATGCAACATTCTAATATTGGTGTTAAGGAATTGCCGTGCAATATCTGTTCGTTTAAAACAACAAATCAGGAGGCATTAGAGAAACACATCTTTAGAAACCATTCTTCAGTGAAATTACAAGAGTGTCCTCATTGTTTTTTTACCACGAGGTATCGGACACTTCTAAATCAGCACATAATAAGGTTACATACTGACGCCGAAAAGATTGAATGGTTCAAATGCTCTCATTGTGATTATAAAGGAAAAGTTAGAGGAAATTTGCTGAGACATCTTAGAGCAGTTCATAGAAGTGTTGGGAATAAAACGTTTAGTTGCGATTTGTGTGATTACAAATCAAATAGAAAAAAACACATCAAACGTAAGCACACAATCATTGAAGAATCACAATCGAAATGTGTTCGTTGTGATTTGTGCAATTATACAACAAGTCGGGAAGAGAATTTAAAAAGACACAAAAATTACAACCATTTGGCACCCCAAGACACAATTTTATATGAATGTACGCAATGTGTATTCAGAACAAAGCATCGGGGCGACTTGAAGCGCCACCATATAAGACATCACACGGCCTTAGATGCTATAAAATGGCACAACTGTAAGCTCTGCACCTACCGGTCGAAAACCGCATCAGATTTGAGGTCACACATTCGATTACGACACGAGGATTTGAAACAAAGAATGAGATTTTCTTGCGATTTTTGTCCTTACAAAACCGGGCAAAATCTTTCTTTGAAAAGACACGTTACTAGACGGCACACTGCACTTGAGGAAGTCCAGTGGTTCGAATGTGACCAATGCAACTACAGGGGAAATGCCAGTCAACACAAAAAAATGCAACATTCTGACAGCAGTATTAAGACAGTGTCGTGCAATTATTGCTGTTTTAGGACCACCGTCGAGGATGAATTGGAGAAACATATCGCAAAAGGACACTCTTTAAGGAAATTACACGAATGTCCACAGTGTTTTTACACAACGAAACGTAAAACTTTACTGAATCGGCATCTTGTAACGCAGCATGCTGATGCTGAACAAATCAAGTGTTTCAAATGCAATGAATGTGATTACCAGGGGAAACTTAAAACTTATTTGATGAGACATATTAAGTTGGTTCATAAAAGTGAGGAGACTAATAAGTTATTCAATTGTGATTTGTGCGAGTATAGGAGCAAGAGAAAAGAGAATCTAAAGAGACACAAGATTAGTATGCATTCCACAATACCAAAAATTATATAA
- Protein Sequence
- MESNLVGEVTFNCDQTVETFKCNLCHFKTDLKTVLHYHRYLHHNSEETRRKIAKYKCRKCDFTTYSVLLWFKHNVRKNLDIKDFTKVYRFECTCCPFKAVYKVSLHLHILNKHTSSEQITWFQCEHCDFKTKLKASLIRHTSLKHTLIDESQWFSCDLCKYKTQQETNLKRHKIYNHSQDIAMYECTKCTYKTKHRGSLKCHELRHHDDAQWYSCDYCNHRSKIKKDLLRHIQLRHTENTSKARNEFSCTFCTYKTLYQQSLKQHIVGHHTAPEEIQWFECDQCDYKGKRKDYLNVHKKMQHSNIGVKELPCNICSFKTTNQEALEKHIFRNHSSVKLQECPHCFFTTRYRTLLNQHIIRLHTDAEKIEWFKCSHCDYKGKVRGNLLRHLRAVHRSVGNKTFSCDLCDYKSNRKKHIKRKHTIIEESQSKCVRCDLCNYTTSREENLKRHKNYNHLAPQDTILYECTQCVFRTKHRGDLKRHHIRHHTALDAIKWHNCKLCTYRSKTASDLRSHIRLRHEDLKQRMRFSCDFCPYKTGQNLSLKRHVTRRHTALEEVQWFECDQCNYRGNASQHKKMQHSDSSIKTVSCNYCCFRTTVEDELEKHIAKGHSLRKLHECPQCFYTTKRKTLLNRHLVTQHADAEQIKCFKCNECDYQGKLKTYLMRHIKLVHKSEETNKLFNCDLCEYRSKRKENLKRHKISMHSTIPKII
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -