Tmad008577.1
Basic Information
- Insect
- Tribolium madens
- Gene Symbol
- -
- Assembly
- GCA_015345945.1
- Location
- JADDYM010000011.1:9163796-9165196[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 4.4 3e+02 2.2 4.9 1 23 20 42 20 42 0.98 2 14 1.4 94 3.7 1.8 1 18 57 74 57 75 0.64 3 14 0.0017 0.12 12.9 2.3 1 23 90 112 90 112 0.96 4 14 0.00045 0.03 14.7 4.7 1 23 121 143 121 143 0.98 5 14 0.23 15 6.2 1.4 1 23 159 182 159 182 0.94 6 14 0.00045 0.031 14.7 2.4 1 23 191 213 191 213 0.98 7 14 0.0018 0.12 12.8 4.4 1 23 222 245 222 245 0.97 8 14 0.0031 0.21 12.1 5.1 1 23 254 277 254 277 0.96 9 14 0.0021 0.14 12.7 2.5 1 23 286 309 286 309 0.98 10 14 0.00064 0.043 14.3 4.1 1 23 323 346 323 346 0.95 11 14 0.03 2 9.0 3.8 1 23 355 378 355 378 0.97 12 14 2.6e-05 0.0018 18.6 3.5 1 23 386 408 386 408 0.97 13 14 0.021 1.4 9.5 5.6 1 23 413 436 413 436 0.94 14 14 0.00043 0.029 14.8 4.7 1 23 443 465 443 466 0.96
Sequence Information
- Coding Sequence
- ATGCAAACTGAGTCTTGCGAGCAAGAATTTAACTGTGGAACAAAATTTCTGGAATGTTACAAGTGCAATTTCTGTTATTTTCGTACAGATCTACAGACTTATCTCTACTATCATAACAAAACACATTTAGAGAAGCCCCCAGAAGGGGGGATACTAGAACCAAAACTTTATACGTGCAATAAGTGTGATTTTAGGACATTTTCAATTTTACATTATCTGAGACATGACTCGAAATGTGAACTTGTAAAGTCAAGAGAAGGAAAAGTATTTAACTGCAATTCGTGTGAATACAAGACAAAAAATAGTTGGAATTTAAAAAGACACTCTCTCTCGCACATTACTAACAAATCTGAGAAGTTATTTCAATGCAATTTATGCGAATACAAATGTAAGAAGAAATGGAATTTGCGAAGACACGCTTTAAAACACACAACCCCCCAAAACTCTGGAAAAATCCGAAACTATGAACAAAAATTCGCATGTGATCATTGCGATTACAAGGCCCGAATTAAACTCGACTTTACAATGCACCTGAAACAAGTCCACAATCTCGACGACAAAATGTACTTATTTTACTGCAATTTCTGTCAGTATAAAACCAACAGTGAAGCCAACTTAACCAAACACTTACTTAAGCACAAAACCGAGAATGAAACGACTTTATTTTATTGCCATCTTTGTCAGTACAAAACTGAGAAAGAGAGAAATTTACGAAGACACATTTCGACAAATCACGCAGCCCCTGAAACTATAGTCTCACATGAGTGCCCCCAATGCCCCTTCAAGACACGCCATCATGTCGATTTGAAACGACACATTATTAGACGTCATACAGCCCCTGAAACCATCCAATGGTACAAATGCGACCAATGCGACTACCAAGCAAAGTTCACATTCGCCCTGAAAAAACACATCAAGACTAAACATGTCGCTGTTGCTCTTCTCAAGTCGAAACTTATCCCTTCACACGATTGCCCCCACTGTTCTTTCACTACCAGATATTCAGGGGATTTAAAAAGACACATTTTGCGACGACATACAGCAATGGAAGCGATTGAATGGTACAAATGTGACCAATGCGATTATAAAGCCAAGTTGAAATTCTCCCTGAAACAACATGTTCACATGAGACACACATATAATGAGAGTGGTTTCCACCCATGTCACATTTGTCCCTACAAAAGTCGAAATGAAGCAAATTTAAAAAAACATCTTAAAACACATTCAACGAAAACTTTCGAATGTCCGCATTGTTTTTTCACGACACGGTTTCAGTATTTCCTGAAACGGCATCTCACCCAACAACATGCCGAGGACGTCAAGTGGTTTCAGTGCGATCAGTGTGACTACAAAGGGAAGTTTCAGTTTTACTTACAAAAGCACATGAAAATACACCATTGA
- Protein Sequence
- MQTESCEQEFNCGTKFLECYKCNFCYFRTDLQTYLYYHNKTHLEKPPEGGILEPKLYTCNKCDFRTFSILHYLRHDSKCELVKSREGKVFNCNSCEYKTKNSWNLKRHSLSHITNKSEKLFQCNLCEYKCKKKWNLRRHALKHTTPQNSGKIRNYEQKFACDHCDYKARIKLDFTMHLKQVHNLDDKMYLFYCNFCQYKTNSEANLTKHLLKHKTENETTLFYCHLCQYKTEKERNLRRHISTNHAAPETIVSHECPQCPFKTRHHVDLKRHIIRRHTAPETIQWYKCDQCDYQAKFTFALKKHIKTKHVAVALLKSKLIPSHDCPHCSFTTRYSGDLKRHILRRHTAMEAIEWYKCDQCDYKAKLKFSLKQHVHMRHTYNESGFHPCHICPYKSRNEANLKKHLKTHSTKTFECPHCFFTTRFQYFLKRHLTQQHAEDVKWFQCDQCDYKGKFQFYLQKHMKIHH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -