Tmad006714.1
Basic Information
- Insect
- Tribolium madens
- Gene Symbol
- -
- Assembly
- GCA_015345945.1
- Location
- JADDYM010000020.1:7325540-7326852[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 3.6 2.5e+02 2.4 0.3 15 23 126 134 124 134 0.88 2 11 0.00012 0.0079 16.6 0.1 3 23 141 162 139 162 0.95 3 11 4.4e-05 0.0029 17.9 2.5 1 23 167 190 167 190 0.94 4 11 1.7 1.2e+02 3.5 6.2 1 19 206 224 206 229 0.89 5 11 0.0046 0.31 11.6 0.2 2 23 230 250 229 250 0.97 6 11 0.036 2.4 8.8 0.4 3 23 257 278 255 278 0.93 7 11 1.1e-05 0.00076 19.8 4.1 1 23 283 305 283 305 0.98 8 11 0.0007 0.047 14.1 1.9 1 23 311 334 311 334 0.96 9 11 4.9e-06 0.00033 20.9 2.0 1 23 340 362 340 362 0.98 10 11 2.9e-05 0.0019 18.5 0.5 1 23 368 391 368 391 0.98 11 11 0.0023 0.16 12.5 0.3 2 23 400 421 399 421 0.95
Sequence Information
- Coding Sequence
- ATGAGTAAACGAATTTGTAGGTTATGTTTAGCTCATCCTTCAGTTTGCTATTCGTTGCTAGAAGGCAGTCTTTCAGATATGTTGGAAACTTTAACTTCAATTAAGGTTGATGCTAGTGATATATCACCTGTAAGTTGTTTAAAATGTTTACTAAATATGAAACTTGCATTCAATATTCGACAGAACTTTATAAAATCTGACGAAAAACTAAAAGAACTAGCAATTTTAAATAACGTTGAAGTGAAATTAGAAGTGTCTGAAGTAGATTTAGTGCAAGAATCTACACAAGAAATGAATTTAATTCAAGTTGGGGCTGAAATAGATTCGCTATGTCTTTCTTATTGTATAATTTGTGGTGACAACGTGGCTGAAAAAACTCTAGCAAAACATATGCGAGAACATTTCGCCAAGGAGCAAATATGTGATATATGTGACGAATCATTTATTGATCTTGAGGAATACAAAAGCCACATCAATTTGAAACACCCTCAAACCAGTCACAAGTGCCCCTATTGTGATACAAGCTTTAGATACAAGAACTTATACAATATTCACTTGAGCCAAGCTCACAAAACATTTGATAAAAAACGAGAGACTAACGACCCAGGGGGCCCCTTCACATGCGACGTGTGTCAGAAACAATTCACCTGTAAACGAAAATTTAAAAGTCATTCCCACCAACGCAAGAAATGCCCCATTTGCGACGCAGAAATCACCAAAAGCAATTTCAGTAAGCACATCATGAACCATTCTTCGGGGCCCCAAATTTGTGAGCTTTGTGGGGCGACTTTGCGCAGTTTGGAGAGTTTGAGAGGCCATCTCTCTCATACTCACAGTTCAGAAATTTATAATTGCAACGAGTGCGGGAAAGTGTTTCATAAACGGTACGCTTATCGTCTCCACATGAAGAAACACGCCGGGGAGAAGACCCACATTTGTGAAAGTTGCGGCAAGACTTTTCTCACGCTTTTTTACTTAAATAAACACGTAAAAACGGCGCATCTGAAACTGCGACCGTATATTTGCAAATATTGTAATAAAGCGTTTTCAAGTAAGTTTGCTATGAGGACGCATGTGAGGCAACATACCAATGAGACGCCGTACAAATGCGAGGTTTGTGGGGACGGATTTCGGCAAAATGTGTCTTTGAGAGCGCACAGAAAGTCCAAACATAATATTATAGAGCCGAAAAATTGCGCTTGCACTGTCTGTGGGAAGTTGTTTGGGTCAGAACAGGCTATAATCAGCCACATGAGACTACATTAA
- Protein Sequence
- MSKRICRLCLAHPSVCYSLLEGSLSDMLETLTSIKVDASDISPVSCLKCLLNMKLAFNIRQNFIKSDEKLKELAILNNVEVKLEVSEVDLVQESTQEMNLIQVGAEIDSLCLSYCIICGDNVAEKTLAKHMREHFAKEQICDICDESFIDLEEYKSHINLKHPQTSHKCPYCDTSFRYKNLYNIHLSQAHKTFDKKRETNDPGGPFTCDVCQKQFTCKRKFKSHSHQRKKCPICDAEITKSNFSKHIMNHSSGPQICELCGATLRSLESLRGHLSHTHSSEIYNCNECGKVFHKRYAYRLHMKKHAGEKTHICESCGKTFLTLFYLNKHVKTAHLKLRPYICKYCNKAFSSKFAMRTHVRQHTNETPYKCEVCGDGFRQNVSLRAHRKSKHNIIEPKNCACTVCGKLFGSEQAIISHMRLH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -