Basic Information

Insect: Tribolium madens
Gene Symbol: pita
Assembly: GCA_015345945.1
Location: JADDYM010000007.1:8312294-8320678[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.00088 0.059 13.8 0.8 1 23 210 232 210 232 0.97

2 10 1.4e-05 0.00092 19.5 1.3 1 23 238 260 238 260 0.97

3 10 1.9e-05 0.0012 19.1 1.3 1 23 266 288 266 288 0.98

4 10 0.1 6.8 7.3 0.2 1 23 294 316 294 316 0.92

5 10 1.4e-05 0.00094 19.5 1.4 1 23 322 344 322 344 0.98

6 10 0.0001 0.0069 16.8 1.9 1 23 350 372 350 372 0.97

7 10 3.5e-05 0.0024 18.2 4.4 1 23 378 400 378 400 0.98

8 10 1.2e-05 0.00078 19.7 0.5 1 23 416 438 416 438 0.96

9 10 0.023 1.6 9.3 0.2 2 23 444 465 443 465 0.97

10 10 1.4e-05 0.00095 19.5 0.3 1 23 471 493 471 493 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.00088	0.059	13.8	0.8	1	23	210	232	210	232	0.97
2	10	1.4e-05	0.00092	19.5	1.3	1	23	238	260	238	260	0.97
3	10	1.9e-05	0.0012	19.1	1.3	1	23	266	288	266	288	0.98
4	10	0.1	6.8	7.3	0.2	1	23	294	316	294	316	0.92
5	10	1.4e-05	0.00094	19.5	1.4	1	23	322	344	322	344	0.98
6	10	0.0001	0.0069	16.8	1.9	1	23	350	372	350	372	0.97
7	10	3.5e-05	0.0024	18.2	4.4	1	23	378	400	378	400	0.98
8	10	1.2e-05	0.00078	19.7	0.5	1	23	416	438	416	438	0.96
9	10	0.023	1.6	9.3	0.2	2	23	444	465	443	465	0.97
10	10	1.4e-05	0.00095	19.5	0.3	1	23	471	493	471	493	0.97

Sequence Information

Coding Sequence: ATGGAAAACCGTGCAAATATTCTACGTGCCATGCAAATATGCCGATTTTGTCTGAACGAAGAAGGTCCATTGACAAATATCTACGAACGTCAGAACAAGGACAACAAGCAAACTGTTCCACTGCCGCTGCAACTAATGGCGTGCGTTGCGATCGAGGTATTTGAAAACGACGGAATGCCTCAAATGATTTGCAAGACTTGTCGTGCACAGGCCCTTCAATCATACACTTTCAAGACAAATTGCAAAAAAGCAGACGATGCACTAAAAGTGTTTCTAGCCACGGGGTCACTAATCCGACCTTGGAGTCAAGAAGAACTAAATGAACAAACAAAAACTTTCCAAGCAACCAAACGTGTGGTTGACCAAGCTGAAGAAAACAGAACTAAAAAAATCAAACGCGAAAATAGCGACGTAATAACACTCAACTACTCTGCAAGTTTATCTCACGACAGTACCACAGAAGAAAGTAATTTCAACGAAGAAAGTGTCGAAGGTCCTAGTTTCGCAAGCACTGAAGAAAGTGAAGAACCAAATGATCAAAGTATGGAAAATGAAGATTTCATGAATTTGGAAGAAGAATCGGTTTTAAATCCAGTTCTGAAAGTGAATCAAGTCAGAACCGATTGTTTTCCGTGTCCGCATTGCGAAAGATCGTTTCCTCTTAAACAACTCCTCGATCTTCATCAAAGTAATCATGACAGAGAGCGGAATTATAACTGCAATTCTTGCGATAAAGCTTTCTTTACGAAATACGATTTGAGCAAACATCTCCTAATCCATACTGGTAGTAAGCCGTTTACTTGCGTCGTCTGTGAAAAGACATTCGCGAGGGAATCGCTGTTACACAGACATGAGAAGATACACGTTAATGTACCGAAATATTTATGCTCGCAGTGTGATCGCACATTTCTAACTGGAGAAGATCTAGATGCCCACACGGCGAAACATAAGAAGAAGAGGCCGTTCATGTGCAAGATTTGCTCAAAAAGCTTCGTTTTCAAACAGGGTTTAGAACGCCACGAGCAAACCCACAACACCGTCAAACCCCATAAATGCAACTACTGCGAAGCCAGTTTCACATCAGCAATCAAACTAACTCGTCACGTGACCTCCCATGCCGGTCTTCGGCCATACCCTTGCAAGGTATGCGGTCGCACATTCCTCCTCAGCCACCATTTAACTCGCCACATGCGAAGTCACTATGCCGCTCAGCAATCCGAAGCTTACATGCCATCAATAGGCCAATACAAATGCGACGTTTGCAGTATGTCATTCCGACGTAAAGACTCCTTGATCAATCACAGCGCAATCCATTCAATGGTGAATCTAAAATGCGTCATTTGCAACACCGAATTCGACAACGTGGTCAAAGTCAAAGAACACATCACGACGCATCTCTCCGACTTGCCATTTCCGTGCGAAAAATGCGACTATTCGTTCGAAACGCAAGAGCAGTTGGAAGACCACGAGTTGAAACATGCAGAAATGGAGTACGAGGAGCAGATCGAGCAGGAGGTGTTGGCGGAGGCGCGCCAAGCTGCAACAGTGAAGGATTCCAACGATGAGGAGAATTCGGATTACTCCGGGGATGATATCGCCGAATTTACCATCACCAACGACATGGATAACCCCGAAGTGGTGAGACGCTCGAAACGGGCCTCCAAAGTGAAGAATTATGCCGAGTTTTTGAAAGACGAACTGGGTTCAGATGTCGAAGAGAACACAGAAGGTCAAGAAAATGAATTGCAAGAAGAAAACACCGGTGATGAGGCCCAAAACCCGGAAGAAATGCACGAAGAAGCCATAAAACCGATCGTACGATCGGAAGGGACTAAAGTCTACTCGAGGAAAAGTCTCCCAGAGAGACCCAAACTCGTACCACAGATAAATCTAGACCAAAGTAATGTTGCACCATTGTCGAAAATAACACAACCACACACTATTAATTCACTCGAACATTTGACCAAAGATTTGAGTAAGATACCGGATAAGGAAGTGTTTAATATGAAGATTGGGGATAAGACAGTTACTGTACAAAAACTCTTGCTTACGAAAGAACAAATGAAGGCTATGGCTAAAGAAGGGAAGATTGAGAAGAAAGGGAATACGCTTTTGTTAAAGAAAACTGCGAGTCAGTCGTTTCAGAGTGTGAGTTTGGATTCGATTTTTGGGAATTCAAAGTCGGAGGTTAAAACGCCGAGGAAAAAGACGTATCAGAGGAAAGTGAGTACGGGGGGTGAGGAGAGTGGAGAAGCGACAATTACTCTAAATGAGCATTTAAATTTACCGACGGAGGAGAATAGTTCTTAA
Protein Sequence: MENRANILRAMQICRFCLNEEGPLTNIYERQNKDNKQTVPLPLQLMACVAIEVFENDGMPQMICKTCRAQALQSYTFKTNCKKADDALKVFLATGSLIRPWSQEELNEQTKTFQATKRVVDQAEENRTKKIKRENSDVITLNYSASLSHDSTTEESNFNEESVEGPSFASTEESEEPNDQSMENEDFMNLEEESVLNPVLKVNQVRTDCFPCPHCERSFPLKQLLDLHQSNHDRERNYNCNSCDKAFFTKYDLSKHLLIHTGSKPFTCVVCEKTFARESLLHRHEKIHVNVPKYLCSQCDRTFLTGEDLDAHTAKHKKKRPFMCKICSKSFVFKQGLERHEQTHNTVKPHKCNYCEASFTSAIKLTRHVTSHAGLRPYPCKVCGRTFLLSHHLTRHMRSHYAAQQSEAYMPSIGQYKCDVCSMSFRRKDSLINHSAIHSMVNLKCVICNTEFDNVVKVKEHITTHLSDLPFPCEKCDYSFETQEQLEDHELKHAEMEYEEQIEQEVLAEARQAATVKDSNDEENSDYSGDDIAEFTITNDMDNPEVVRRSKRASKVKNYAEFLKDELGSDVEENTEGQENELQEENTGDEAQNPEEMHEEAIKPIVRSEGTKVYSRKSLPERPKLVPQINLDQSNVAPLSKITQPHTINSLEHLTKDLSKIPDKEVFNMKIGDKTVTVQKLLLTKEQMKAMAKEGKIEKKGNTLLLKKTASQSFQSVSLDSIFGNSKSEVKTPRKKTYQRKVSTGGEESGEATITLNEHLNLPTEENSS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00415358;
90% Identity: iTF_01480353;
80% Identity: -