Basic Information

Insect: Tribolium madens
Gene Symbol: -
Assembly: GCA_015345945.1
Location: JADDYM010000097.1:3032688-3035141[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.0038 0.25 11.8 0.2 2 23 346 368 345 368 0.95

2 11 2.7e-07 1.8e-05 24.9 1.8 2 23 437 458 436 458 0.97

3 11 7.8e-06 0.00052 20.3 0.3 1 23 464 486 464 486 0.97

4 11 8.6e-05 0.0058 17.0 2.1 1 23 492 514 492 514 0.98

5 11 3.6e-05 0.0024 18.2 1.3 1 23 520 542 520 542 0.98

6 11 0.00028 0.019 15.4 1.4 1 23 548 570 548 570 0.98

7 11 1.6e-07 1.1e-05 25.6 1.7 1 23 578 600 578 600 0.98

8 11 0.00043 0.029 14.8 0.2 1 23 606 628 606 628 0.97

9 11 1.4e-05 0.00094 19.5 1.3 1 23 634 656 634 656 0.98

10 11 0.0013 0.086 13.3 0.5 1 23 662 684 662 684 0.97

11 11 3.4e-05 0.0023 18.3 0.7 1 23 690 712 690 712 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.0038	0.25	11.8	0.2	2	23	346	368	345	368	0.95
2	11	2.7e-07	1.8e-05	24.9	1.8	2	23	437	458	436	458	0.97
3	11	7.8e-06	0.00052	20.3	0.3	1	23	464	486	464	486	0.97
4	11	8.6e-05	0.0058	17.0	2.1	1	23	492	514	492	514	0.98
5	11	3.6e-05	0.0024	18.2	1.3	1	23	520	542	520	542	0.98
6	11	0.00028	0.019	15.4	1.4	1	23	548	570	548	570	0.98
7	11	1.6e-07	1.1e-05	25.6	1.7	1	23	578	600	578	600	0.98
8	11	0.00043	0.029	14.8	0.2	1	23	606	628	606	628	0.97
9	11	1.4e-05	0.00094	19.5	1.3	1	23	634	656	634	656	0.98
10	11	0.0013	0.086	13.3	0.5	1	23	662	684	662	684	0.97
11	11	3.4e-05	0.0023	18.3	0.7	1	23	690	712	690	712	0.97

Sequence Information

Coding Sequence: ATGGCCGCAATCGACCCTTCCCGATATAATGAATTGTGCAGACTTTGTGCCGCAACAACCACAATGATTTTAGCGGTCCACATCTTCCAAAACGACGGAATTATAAGCCAGTTACGGAAAAAAATCGAATCTTGCCTTTCTATTCAAGTGCACGAAACCGACGAGCTTCCGAAAATGGTGTGCGAAAACTGTATCTACAAACTGAATTTGTTGGCGGAGTTTAAAGAAAAGACGATTCTCACGGAAAGAATGTTAATAAATTTGTTGAAGCAGATTAATTCTAGTAAGCAGAGCATGGATGTTGTCCCAATGGAGCATGAGTTGATAATGACACAAAACCAGCAGCTTCTGGCCAACCATGGAATTGGTGGGGTTGATGAGATTGATTTGGCTCACTTAGGACCAAGAGAGCAGTTGATTGTGGGACATGAAATTATTTTAACTCATCAAAGTGTTGATATAAATGGACATCCACTTGAAAATATTAATTTAAACCACCATGAACTGACCAATCAGGACATTTCTAATCACAGTTTACAAACGCAGGATTCAATTCTGGTAGAAAATGGGAGTGGACATGATATTGAAAGTGCAAGATTTGCCAGTGATAATTTAGATTTAATTCCACATCAACAGTTATTGAATGAGCAGTTTAGATTGCAACATGAGTTACATGTTAATATGACTGATGAAAATACCGTTGATGGAATTACTTTAACAGGTGGTTTAGATAACACAGTGGTTCACTCAAAGATGAATGATAATTTGCAACATGAAGATACCAACACTTATCATATCCACAATGAAAAAGACAGTTTGGATTATCATTCGAGTTCTAACAATTTAAGCATTAAATTAGAATCTCCAAAGCTTGAAGATAGCAACAGTAATAATTCACTCTTAATTGACGAACGACTGAATCACGTTAATGATTCAGAAAATCAAATTTTTATACCTGAAACTGCAAATATTTGTAACCAGTATCAAAATCAAAAAGACGACAGTTATGAAGTGCATTATGAAACACAATTTCAGAAATGTAATATTTGTTTTGCTGTTTTTCCCAATAATGAGGTTTTAAATACTCATCGAAAAGAGGCTCATGGAAGTATAGAGGAATTTAAGCAAATTAAAACGCGATTAAAAAGAGCAACTTTACCGATAAAAAGTAAAAACAACACCGACAGTAACAGTGACGATAGCGGTGGCGACTTTGTTGATGACCTTGAAGACGATGAAAATGAAGATAAACTGCAAATAGAGGTACCGGAAAAAGGAACCAATAAGAAAAAAATATGGTCACCGAAAGTGTGTACAGAGTGTGGCAAATCATATAAAACAAACTACAAATTAAATGAACACATGAGAAAGCACACTGGGGAAAAGCCGTACAAATGCAACGATTGCGATAAAGAATTCAGGTCGAAAATAGGTCTAGCACAACATGCCGCCAAACACACGGGAAAATATGATTATTCCTGTTCAATTTGCGGCAAAGGCTTCCAGTGCAAGAGTTATTTGATGGTTCATCAAAGAGTCCATTCAGACGAAAAACCGTATCCGTGTTTGACGTGCGGACGGAATTTTAAAACCAAACAGTCGCTACTAGACCACACGAATAGGCATTTAGGAGTGAAACCGTACACTTGTGAAACCTGCGGACGAGGTTTCATCACAAAAGGGCTCTGCAAGGCACATCAGAAGGTGCACACAGGCCTGGATAACCGGAAATACTCGTGTAAAGTTTGCAATAAGATGTTTGTGTCGAAAAGTTACTTGCAGACGCATTTGCGGATTCATACGGGAGAAAAACCCTTCATTTGCGAGGTTTGTGGAAAGGGTTTTTTGACTAAGGTAGATTTGCGAATTCACACAACGATGCACACTGGGGAAAAATCGTACGTTTGCGAGATGTGTGGCAAGGCTTTTGCTCGAAGAGACGCTTTGAGATGTCACAGAAGGTCGCATACCGGCGAGAGGCCTTATAGTTGCGATTTGTGTGGACAAACCTTTACCCAGTTTACACCGATGGCTATCCATAAACGTCTCCATACCGGCGAAAGACCTTACGCTTGTGAAAGTTGCGGGAAAACTTTCGTATCCAGATCCACGATGATGTCTCATGCCAAAAAACACAGGTAG
Protein Sequence: MAAIDPSRYNELCRLCAATTTMILAVHIFQNDGIISQLRKKIESCLSIQVHETDELPKMVCENCIYKLNLLAEFKEKTILTERMLINLLKQINSSKQSMDVVPMEHELIMTQNQQLLANHGIGGVDEIDLAHLGPREQLIVGHEIILTHQSVDINGHPLENINLNHHELTNQDISNHSLQTQDSILVENGSGHDIESARFASDNLDLIPHQQLLNEQFRLQHELHVNMTDENTVDGITLTGGLDNTVVHSKMNDNLQHEDTNTYHIHNEKDSLDYHSSSNNLSIKLESPKLEDSNSNNSLLIDERLNHVNDSENQIFIPETANICNQYQNQKDDSYEVHYETQFQKCNICFAVFPNNEVLNTHRKEAHGSIEEFKQIKTRLKRATLPIKSKNNTDSNSDDSGGDFVDDLEDDENEDKLQIEVPEKGTNKKKIWSPKVCTECGKSYKTNYKLNEHMRKHTGEKPYKCNDCDKEFRSKIGLAQHAAKHTGKYDYSCSICGKGFQCKSYLMVHQRVHSDEKPYPCLTCGRNFKTKQSLLDHTNRHLGVKPYTCETCGRGFITKGLCKAHQKVHTGLDNRKYSCKVCNKMFVSKSYLQTHLRIHTGEKPFICEVCGKGFLTKVDLRIHTTMHTGEKSYVCEMCGKAFARRDALRCHRRSHTGERPYSCDLCGQTFTQFTPMAIHKRLHTGERPYACESCGKTFVSRSTMMSHAKKHR

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00167806;
90% Identity: iTF_01480315;
80% Identity: -