Basic Information

Insect: Tribolium madens
Gene Symbol: -
Assembly: GCA_015345945.1
Location: JADDYM010000011.1:3383160-3385020[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 17 0.016 1.1 9.8 3.7 1 23 20 43 20 43 0.92

2 17 2.9e-05 0.0019 18.5 0.6 1 23 47 69 47 69 0.98

3 17 0.092 6.2 7.5 0.5 1 23 75 97 75 97 0.97

4 17 0.49 33 5.2 0.1 2 11 101 110 100 111 0.91

5 17 0.015 0.98 10.0 0.2 3 23 132 151 131 151 0.96

6 17 4.1e-05 0.0028 18.0 0.7 2 23 159 181 158 181 0.94

7 17 0.00076 0.051 14.0 0.5 1 23 186 208 186 208 0.98

8 17 2.7e-07 1.8e-05 24.9 0.1 1 23 214 236 214 236 0.98

9 17 4.5e-05 0.003 17.9 4.0 3 23 263 284 262 284 0.97

10 17 0.00081 0.055 13.9 2.3 1 23 291 313 291 313 0.96

11 17 0.014 0.93 10.1 0.4 2 23 320 342 319 342 0.91

12 17 0.0029 0.19 12.2 8.2 1 23 347 369 347 369 0.97

13 17 1.6e-06 0.00011 22.4 1.2 1 23 378 400 378 400 0.99

14 17 8.5e-07 5.7e-05 23.3 1.6 1 23 405 427 405 427 0.98

15 17 1.1e-05 0.00075 19.8 1.4 1 23 433 455 433 455 0.98

16 17 7.4e-07 4.9e-05 23.5 1.5 1 23 461 483 461 483 0.99

17 17 1.5e-06 0.0001 22.5 0.3 1 23 489 511 489 511 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	17	0.016	1.1	9.8	3.7	1	23	20	43	20	43	0.92
2	17	2.9e-05	0.0019	18.5	0.6	1	23	47	69	47	69	0.98
3	17	0.092	6.2	7.5	0.5	1	23	75	97	75	97	0.97
4	17	0.49	33	5.2	0.1	2	11	101	110	100	111	0.91
5	17	0.015	0.98	10.0	0.2	3	23	132	151	131	151	0.96
6	17	4.1e-05	0.0028	18.0	0.7	2	23	159	181	158	181	0.94
7	17	0.00076	0.051	14.0	0.5	1	23	186	208	186	208	0.98
8	17	2.7e-07	1.8e-05	24.9	0.1	1	23	214	236	214	236	0.98
9	17	4.5e-05	0.003	17.9	4.0	3	23	263	284	262	284	0.97
10	17	0.00081	0.055	13.9	2.3	1	23	291	313	291	313	0.96
11	17	0.014	0.93	10.1	0.4	2	23	320	342	319	342	0.91
12	17	0.0029	0.19	12.2	8.2	1	23	347	369	347	369	0.97
13	17	1.6e-06	0.00011	22.4	1.2	1	23	378	400	378	400	0.99
14	17	8.5e-07	5.7e-05	23.3	1.6	1	23	405	427	405	427	0.98
15	17	1.1e-05	0.00075	19.8	1.4	1	23	433	455	433	455	0.98
16	17	7.4e-07	4.9e-05	23.5	1.5	1	23	461	483	461	483	0.99
17	17	1.5e-06	0.0001	22.5	0.3	1	23	489	511	489	511	0.98

Sequence Information

Coding Sequence: ATGTTTGACATAATTTTTTACAGATCTTACGTACGAGGACCGAAGAAACCTGATAAATACTGTTGCAATCTGTGCAAGGTGTTTTTTTCAACATCTGTTCTTCTCTTTCACCACGAAATACAGGTTCATGGTAAAAAATACACGTGTGAATATTGTGGTGAAACATTTTTTGACAAAATACTTCTACTACAACACAGTAATATGCACAAGCAAAATAACAAGTTTCCATGTTTTGAGTGCGATGCAGAATTTAAAGCTTATTTCCTCTATGTGTATCACAAACGTGTTCACAAGAAGATAACTTGTGAGGTCTGCGGTGAAGTATTTCGAGGCGATTGTGCCAAGCTTTACGAAAACCATTGCTTCAAGGAGCACTTATCTAACAAAGTTGCTTGCGATGTTTGCAACAGAATTTTTTCTTGGAGTTACATCAATAAGCATAAGGAAATTCACGTTGAGCAAAGGCCTACATTGCGGTGTTCTTTTTGTACCAAAGGCTTTTCAACGTCTGCAGGACTCAAAAGTCATATGGAGCAAATGCACGAACATGTTTTGTATATTTGTGTTATTTGTGAAAAAATTCTAATGTCCCAGCATGGCTTGACTCTTCATATGAGACAACATACGGTCGATAACCGTTTTGTATGTGGCGTATGTGGAAAAAAATTTCCTAGGGGTGAAAACTTGAAGGCACACCAAAGAGTGCACACATTTGAAAAATCCTACACATTTAAACAAAGCTTGAAAGACGTCCGTTTGAGAAAAGGCCATTCCACCTCGGAGTTTTGTAACATCTGTGACAAAACTTTTGAAACTACAGATTCTTTTAAACGCCACTTGCACACAACACACGCCGTTCCTGCTCGAATATTTACGTGCCTCTCTTGTGGCAAGCAATTCCGCAAGAAACAACTTTTGAAATACCACGAGGCTCGACACATCAAAGATTTCAAAGTCAAGTGTGACCAATGCGATCGCGGATTTTACACAATGTTAGAGTTTAAAAATCATTACGCTGCGCGACATAGAGGCCTTTCTCATGTTTGCAAACATTGTGGTAAATCTTTCCTGGACAAAAATTGCTTCAGACGCCATGTGCTTACCCACGATGTTAATTACGTGAAGCAGGAATACAAATGTACTCAGTGTGACAAGGTTTACACGACTCGAGGGGGCCTTAATGTGCATAAGAAGATGCACGAAAATCTGACATACATGTGTGATATTTGCGGAAAATCTGTCACTTCTAGGACCAGTTTGAAGCACCATATGATGTTGCATACTGGAGAAAAACCTTTTGTTTGTGAGTTTTGTGGGAAGAATTTTAACAAAAAAATGTTGTTGAAGACCCACGAGAGGATACACACGAAGGAGAAGCCATACAAGTGTTCGTTGTGTGCGAAGAGTTTTTCGCAGAGGAGTACCTTGACGATACACACGAGGATTCATACCGGGGAGAGACCTTTTGTTTGCGGGATTTGTCAAAGGGATTTTGTTACGAAGACGTTGCTGAAGGCACATATGAAGGTTCATGGGACAGACTTAGTGGACACGTAG
Protein Sequence: MFDIIFYRSYVRGPKKPDKYCCNLCKVFFSTSVLLFHHEIQVHGKKYTCEYCGETFFDKILLLQHSNMHKQNNKFPCFECDAEFKAYFLYVYHKRVHKKITCEVCGEVFRGDCAKLYENHCFKEHLSNKVACDVCNRIFSWSYINKHKEIHVEQRPTLRCSFCTKGFSTSAGLKSHMEQMHEHVLYICVICEKILMSQHGLTLHMRQHTVDNRFVCGVCGKKFPRGENLKAHQRVHTFEKSYTFKQSLKDVRLRKGHSTSEFCNICDKTFETTDSFKRHLHTTHAVPARIFTCLSCGKQFRKKQLLKYHEARHIKDFKVKCDQCDRGFYTMLEFKNHYAARHRGLSHVCKHCGKSFLDKNCFRRHVLTHDVNYVKQEYKCTQCDKVYTTRGGLNVHKKMHENLTYMCDICGKSVTSRTSLKHHMMLHTGEKPFVCEFCGKNFNKKMLLKTHERIHTKEKPYKCSLCAKSFSQRSTLTIHTRIHTGERPFVCGICQRDFVTKTLLKAHMKVHGTDLVDT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -