Basic Information

Insect: Tribolium madens
Gene Symbol: -
Assembly: GCA_015345945.1
Location: JADDYM010000011.1:3420929-3423223[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 19 0.00043 0.029 14.8 1.8 1 23 20 42 20 42 0.97

2 19 0.0018 0.12 12.9 0.2 2 23 48 70 47 70 0.95

3 19 0.067 4.5 7.9 2.4 1 23 76 99 76 99 0.95

4 19 3.2e-05 0.0021 18.4 2.4 1 23 105 128 105 128 0.95

5 19 2.5e-05 0.0017 18.7 1.8 1 23 133 155 133 155 0.99

6 19 3.3e-05 0.0022 18.3 1.6 1 23 164 186 164 186 0.99

7 19 4e-05 0.0027 18.0 0.2 1 23 193 215 193 215 0.96

8 19 3.1e-06 0.00021 21.5 0.3 1 23 221 243 221 243 0.98

9 19 1.2e-07 8.3e-06 25.9 0.3 1 21 249 269 249 269 0.98

10 19 0.00046 0.031 14.7 1.6 1 23 281 303 281 303 0.98

11 19 0.034 2.3 8.8 3.5 1 23 307 330 307 330 0.94

12 19 0.0083 0.56 10.7 1.0 1 23 336 359 336 359 0.95

13 19 0.00031 0.021 15.2 2.1 1 23 365 388 365 388 0.93

14 19 0.00021 0.014 15.8 5.5 1 23 393 415 393 415 0.98

15 19 0.00016 0.011 16.2 1.6 1 23 424 446 424 446 0.97

16 19 9e-06 0.0006 20.1 0.4 1 23 453 475 453 475 0.98

17 19 1.2e-07 8e-06 26.0 0.3 1 23 481 503 481 503 0.98

18 19 2.1e-07 1.4e-05 25.2 1.1 1 23 509 531 509 531 0.98

19 19 0.014 0.94 10.0 1.5 1 21 537 557 537 558 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	19	0.00043	0.029	14.8	1.8	1	23	20	42	20	42	0.97
2	19	0.0018	0.12	12.9	0.2	2	23	48	70	47	70	0.95
3	19	0.067	4.5	7.9	2.4	1	23	76	99	76	99	0.95
4	19	3.2e-05	0.0021	18.4	2.4	1	23	105	128	105	128	0.95
5	19	2.5e-05	0.0017	18.7	1.8	1	23	133	155	133	155	0.99
6	19	3.3e-05	0.0022	18.3	1.6	1	23	164	186	164	186	0.99
7	19	4e-05	0.0027	18.0	0.2	1	23	193	215	193	215	0.96
8	19	3.1e-06	0.00021	21.5	0.3	1	23	221	243	221	243	0.98
9	19	1.2e-07	8.3e-06	25.9	0.3	1	21	249	269	249	269	0.98
10	19	0.00046	0.031	14.7	1.6	1	23	281	303	281	303	0.98
11	19	0.034	2.3	8.8	3.5	1	23	307	330	307	330	0.94
12	19	0.0083	0.56	10.7	1.0	1	23	336	359	336	359	0.95
13	19	0.00031	0.021	15.2	2.1	1	23	365	388	365	388	0.93
14	19	0.00021	0.014	15.8	5.5	1	23	393	415	393	415	0.98
15	19	0.00016	0.011	16.2	1.6	1	23	424	446	424	446	0.97
16	19	9e-06	0.0006	20.1	0.4	1	23	453	475	453	475	0.98
17	19	1.2e-07	8e-06	26.0	0.3	1	23	481	503	481	503	0.98
18	19	2.1e-07	1.4e-05	25.2	1.1	1	23	509	531	509	531	0.98
19	19	0.014	0.94	10.0	1.5	1	21	537	557	537	558	0.94

Sequence Information

Coding Sequence: ATGTACATTGTTGCCACTTCACTAAAGTGTGCTCATTTCAGATACAACGTTCAAGATTTTTACTGCGACGTTTGCTACAAAGTGTTCCCTTCGACTGTTAAACTGACCAAACATAAAACAAGACATCGAGAAAAAACCCTCAAGTGTCCCTTGTGTTCTAAAATGTTTCTCTTGCCCTCTGAGTTACGATCCCACATATCGGTCCAACACGATAAGCAATATAATTTTTCTTGCGACCTTTGTAACTACTCAACGTACAAGAGATGGTGTCTTGAAGTGCATAAAATAAGAGAACACACGAAAGAATATCCATTCAAGTGCGATATTTGCAATAAAGGTTTCGTGAGTAAAGTGTGTTTAACGAAACATAAAGAAGTGCAACACGAGGGTCGAAGATACACTTGCGGATTTTGCTCTAAAGTGTTTCGAGATGAAGGCCAGTTTAAAGTGCACACAAAACGACATGATCCTAATTACGTCGAAAGCAGATACACTTGTTCAGAATGTCTGAAAGTGTTCAAGACTAAAGTGCGTTGGAAGGACCACATGAAAATGCACATCGAGGGTCGAAGTGAGTACATTTGCGACATTTGTGGCAAGAGTGTGACAACTTTGCAAAGTTTGAAAGACCACAAGACGATACACACAGGGGAAAAAAACTTTGTTTGTGAGGAATGCGGGAAAGCTTTCAACAAGAAACAAGTGCTTCAAATTCACAGGCGAGTGCACACTAAGGAAAAGCCGTTTAAATGTACGGAATGTGACAAAGCGTTTTCGCAGAGAAGTAGTCTTATTGTTCATATGCGATGCTACTCCACAAAGCAAATCACTGGGGAACACTACCAGTGCGAAATCTGCACCAAAATATTTTTTTCTTATCGTGGATTTCGCTTACACCAGGCCCGACATAACAAAAAACACAAGTGTCCTTTCTGCGACAAGCGCTATGTCGTTCCTTTTTTACTCAAATGTCACATTTCTTCAAGCCACGAAAACCAAAAGAACTATTTTTGCGACATTTGCGATTTTGCGACTTATCGCAAGAGGAGTTTTGAGGTCCACAAGATTAGAGAACACACAAAGGAGTATCCTTTCAAGTGTGACATTTGCAATAAGGGTTTTGTGCACAAAGTGTTTTACACTAGACACAACGAAGTCGAACACGAAGGTTTAAGATACACTTGTGAAGTTTGTTCGAAAAAATTCAGATCGGAAAAACACTTTAAAATTCACACAAAACAACATGATTCGAATTATGTCGAAACTAGATTCACTTGTGTTGAATGTTTGAAAGTGTTTAAAAACAAAAAGGGATGGAGGCACCACATGGAAGCGCACAATGGGGACAAAAAAGAATACATTTGCGATATTTGTGGCAAAAGTGTGTCAACTTTGCAAAGTTTGAAAGATCACAGGACAACACATACAGGTGAAAAAAATTTCGTATGTGAGATTTGTGGGAAAGCTTTCAATACGAGAGCGTTACTTAAGACTCATACTAGGGTTCATACTAAGGAGAAGCCCTTCAAGTGTACAGAATGCGAAAGGGCGTTTTCCCAGAGGAGTACTCTTGTGGTTCACATGAGATACCACACCGGAGAAAGGCCTTACAAGTGCGACTTGTGTGCTAAGCAGTTTATCACAAGAACTGTTCTTAATGCACATAAATGTAAAGGTTTAGTGTAG
Protein Sequence: MYIVATSLKCAHFRYNVQDFYCDVCYKVFPSTVKLTKHKTRHREKTLKCPLCSKMFLLPSELRSHISVQHDKQYNFSCDLCNYSTYKRWCLEVHKIREHTKEYPFKCDICNKGFVSKVCLTKHKEVQHEGRRYTCGFCSKVFRDEGQFKVHTKRHDPNYVESRYTCSECLKVFKTKVRWKDHMKMHIEGRSEYICDICGKSVTTLQSLKDHKTIHTGEKNFVCEECGKAFNKKQVLQIHRRVHTKEKPFKCTECDKAFSQRSSLIVHMRCYSTKQITGEHYQCEICTKIFFSYRGFRLHQARHNKKHKCPFCDKRYVVPFLLKCHISSSHENQKNYFCDICDFATYRKRSFEVHKIREHTKEYPFKCDICNKGFVHKVFYTRHNEVEHEGLRYTCEVCSKKFRSEKHFKIHTKQHDSNYVETRFTCVECLKVFKNKKGWRHHMEAHNGDKKEYICDICGKSVSTLQSLKDHRTTHTGEKNFVCEICGKAFNTRALLKTHTRVHTKEKPFKCTECERAFSQRSTLVVHMRYHTGERPYKCDLCAKQFITRTVLNAHKCKGLV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -