Tmad008109.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Tribolium madens
Gene Symbol
-
Assembly
GCA_015345945.1
Location
JADDYM010000011.1:3408493-3420393[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 64 0.52 35 5.1 0.5 2 23 23 45 22 45 0.95
2 64 0.0011 0.073 13.5 2.1 1 23 51 74 51 74 0.95
3 64 0.035 2.4 8.8 10.3 1 23 79 101 79 101 0.98
4 64 0.00032 0.022 15.2 0.2 1 23 110 133 110 133 0.96
5 64 7.9e-05 0.0053 17.1 0.2 1 23 140 162 140 162 0.98
6 64 1.5e-05 0.001 19.4 0.2 1 23 168 190 168 190 0.98
7 64 2.3e-08 1.5e-06 28.2 1.5 1 23 196 218 196 218 0.99
8 64 0.0081 0.55 10.8 5.8 1 23 227 250 227 250 0.96
9 64 0.6 40 4.9 4.6 2 23 257 279 256 279 0.95
10 64 0.0036 0.24 11.9 5.5 1 23 285 308 285 308 0.95
11 64 0.026 1.8 9.2 4.7 1 23 313 335 313 335 0.97
12 64 3.2 2.2e+02 2.6 0.1 1 16 344 359 344 361 0.78
13 64 4.2e-05 0.0028 18.0 0.6 1 23 374 396 374 396 0.98
14 64 2.4e-06 0.00016 21.9 0.1 1 23 402 424 402 424 0.98
15 64 4.6e-07 3.1e-05 24.1 1.4 1 23 430 452 430 452 0.98
16 64 0.024 1.6 9.3 4.2 1 21 458 478 458 479 0.94
17 64 3.7e-05 0.0025 18.2 1.2 1 23 496 518 496 518 0.97
18 64 0.012 0.82 10.2 1.3 1 23 523 546 523 546 0.87
19 64 0.6 40 4.9 1.9 1 23 552 575 552 575 0.95
20 64 0.00023 0.016 15.6 0.2 1 23 581 604 581 604 0.97
21 64 0.23 15 6.2 4.5 1 23 609 631 609 631 0.97
22 64 4.4e-05 0.003 17.9 1.5 2 23 641 663 640 663 0.93
23 64 1.1 73 4.1 0.2 1 9 670 678 670 692 0.75
24 64 0.001 0.069 13.6 1.3 1 23 698 720 698 720 0.99
25 64 1.3e-05 0.00087 19.6 2.2 1 23 726 748 726 748 0.97
26 64 0.00019 0.013 15.9 1.3 1 23 774 796 774 796 0.98
27 64 0.00049 0.033 14.6 0.9 1 23 801 824 801 824 0.96
28 64 0.08 5.4 7.7 0.9 2 23 831 853 830 853 0.94
29 64 0.64 43 4.8 1.2 1 23 859 882 859 882 0.96
30 64 0.00013 0.0086 16.4 4.6 1 23 887 909 887 909 0.98
31 64 0.00031 0.021 15.3 2.4 1 23 918 940 918 940 0.95
32 64 5.7e-05 0.0038 17.6 1.0 1 23 947 969 947 969 0.97
33 64 0.00021 0.014 15.8 0.2 1 23 975 997 975 997 0.98
34 64 0.00014 0.0094 16.3 0.2 1 22 1003 1024 1003 1024 0.96
35 64 0.00024 0.016 15.6 0.6 1 23 1042 1064 1042 1064 0.98
36 64 4e-06 0.00027 21.2 0.0 1 23 1070 1092 1070 1092 0.98
37 64 1.9e-05 0.0013 19.1 1.7 1 22 1098 1119 1098 1119 0.96
38 64 0.00057 0.038 14.4 1.4 1 23 1128 1150 1128 1150 0.97
39 64 0.43 29 5.4 4.5 1 23 1155 1178 1155 1178 0.94
40 64 0.0014 0.096 13.2 0.6 1 23 1213 1236 1213 1236 0.97
41 64 0.00069 0.046 14.2 0.8 1 23 1241 1263 1241 1263 0.97
42 64 0.00011 0.0071 16.7 1.1 1 23 1272 1294 1272 1294 0.96
43 64 0.036 2.4 8.8 1.6 1 23 1301 1323 1301 1323 0.97
44 64 1.7e-06 0.00011 22.4 0.1 1 23 1329 1351 1329 1351 0.99
45 64 1.3e-06 8.8e-05 22.7 0.5 1 22 1357 1378 1357 1378 0.96
46 64 0.09 6.1 7.5 0.1 2 23 1389 1411 1388 1411 0.93
47 64 0.003 0.2 12.2 4.6 1 23 1416 1438 1416 1438 0.97
48 64 0.022 1.5 9.4 2.3 3 23 1449 1469 1448 1469 0.95
49 64 2e-06 0.00013 22.2 0.7 1 23 1476 1498 1476 1498 0.98
50 64 0.044 3 8.5 1.5 1 23 1504 1526 1504 1526 0.94
51 64 1.8e-07 1.2e-05 25.4 1.4 1 23 1532 1554 1532 1554 0.99
52 64 2.1e-05 0.0014 18.9 0.3 1 23 1569 1591 1569 1591 0.98
53 64 3.6e-05 0.0024 18.2 5.3 1 23 1597 1619 1597 1619 0.98
54 64 1.7 1.1e+02 3.5 0.2 1 14 1625 1638 1625 1641 0.86
55 64 0.00019 0.013 15.9 3.8 1 23 1645 1667 1645 1667 0.97
56 64 0.00051 0.035 14.6 3.0 1 23 1672 1694 1672 1695 0.95
57 64 0.02 1.3 9.6 1.3 1 23 1701 1724 1701 1724 0.96
58 64 0.055 3.7 8.2 2.0 1 23 1730 1753 1730 1753 0.93
59 64 0.0005 0.034 14.6 1.8 2 23 1759 1780 1758 1781 0.94
60 64 5.3e-05 0.0036 17.6 0.1 1 23 1790 1813 1790 1813 0.96
61 64 0.00024 0.016 15.6 0.5 1 23 1820 1842 1820 1842 0.98
62 64 7.2e-06 0.00049 20.4 0.0 1 23 1848 1870 1848 1870 0.99
63 64 2.5e-07 1.7e-05 25.0 1.0 1 23 1876 1898 1876 1898 0.99
64 64 0.13 8.8 7.0 2.8 1 21 1904 1924 1904 1925 0.91

Sequence Information

Coding Sequence
ATGTTTATTTTTGCATCTGAATTAAAAGTTCACATATCTCAGCGACACTTGCAAGTGGAGAAGCTTTCTTGCGACAGTTGTAATTATGAAGCGCGCGACAAGCGTAGGCTTCAAGATCATATAATCAGAAGGCATACTCATATATTTGAGTTTAAGTGCGATGTTTGCAGTAAAGGTTATTCCAAGAAATGTGAGTTGATTCGTCACAAAGAAGTCGAACACGAAGGGATGCGATTTGTTTGTCACTTTTGCTCCAAAGAATTCAAGCAATATCACCATATGAAATCGCATGTAAAAAAACACGATTCTGATTATCTTGGAGTTAAATTTCCGTGTCCAGAATGTTCCAAGGTTTTGGGTCGAGAAAGTACATTGAGGACTCATATTGAGAAGTTCCATAGGGGTGAAAAAGGAAAATATGTTTGCGATATTTGTGGGAAAAGAGTGATGACTAATGCTAGTTTGAACAACCATAAGAAAATACATGCTGGTGAGAAGAATTTTGTTTGCAACGAGTGTGGCAAAGCTTTTATTACAAAACAGATACTTACAACCCATATTAGAGTACACACTAAAGAAAAACCTTTCAAGTGTACCGAATGCGACAAGGCATTTTCTCAAAAAAGTAGTCTTACCATTCATATTCGTAAACATAAAAGAAGACATAAAGCGAAAACTCATAAGTGTTCTTTTTGTGATAAAATGTTTCTTCATCCATTTGAATTAAAACGTCACATGTCTAATCGACACTTGCAAGTGGAGAAGTTGTCTTGTGACACTTGTGATTTTCAYACGCACGACAAGAGTAGGCTTCGAAATCACATAATCAGGAGGCACACTCGTATTTTTCAGTTTAAGTGCGATCTCTGCAATAAAGGTTTTTGCCATAATCATGAATTGATTCTACACAAAGAAGTTAATCACGGAGGGATGCGATTCGTTTGTCAATTCTGCTCCAAAAAATTCAAGAATTATCAGCAGATGAATTTACATAAAAAGCAACATGATTCTGATTATCTAAGAATTAAATTTCCGTGTCCAGAATGTTCTAAGGTTTTGTGGAGTAAATATTCTTTGAGGGCGCARGTTAGAAGCATCCATAAGTGTGAAGAAGGAAAATATATTTGTGATATTTGTGGTAAAAGATTGAAGTCTAATACTGGTTTAAACAAGCATAAGAAAGTACATACTGGTGAGAAGAATTTTGTATGTAAAGTGTGCGGTAAAGCGTTTGTTGCAAGTGATACACTTAGAAGTCATATTAGAGTGCACACTAAGGAAAAACCTTACAAATGTACCGAATGCGACAAGGCATTTTCTCAAAAAACTAGTCTTACGATTCATGTGCGGTATCACACTGGTGAAAGACCTTACAAATGTGATGTGTGTCACAAGCAGTTCATTACCAGAACAGTTCTCAATTCTCACAAGTGTAAGGGTTTAGTATCCAAATCGTCGAACAAGATTGCTGATGGCTTACGAGTTTACGAGTGCAAAGTCTGCTACAAAGTGTTTGTTACTTCTCGTCAACTTACTAATCATCGTGTAAGCCATCGAGAGAAAAAATACAAATGTCCTTCTTGCGATCGAATGTTTATTCATCAGAGTGAAGTAAAATTTCACGTATCTATTCAACACGTGAAAGAAAAGAGTTTCTCTTGCGAATTTTGTAATTACAAGACGGCGAATCGTTTTGTGTTCAAGAATCATGTAATCAAAATGCATACCAAAGATTTCAAATTCAAGTGTGATGTGTGCAACAAAGGTTATATTGATGAACCGAGCTTGACTCGTCACAAACAAATTGCTCATGAAGGTTTGAGGTTTGTTTGCGAACTCTGTTGTAAAGAGTATAAATATAAAAAAGATTTTGAAAGACATGTCAAACAACACGATCCTAATCATGTCAAGATCAAACTTCCGTGTCCCCACTGTTTTAAATTGTTTACTAGGAAATACGAATTGAAAAGACACATAGACAACGTACACTGTGATGTTGGAGAAAAATATGTTTGTGATATATGTGGTAAAACAATGTGGAGTAAAAATGGATGGGATATACACAAGAAGATACATTCTGGTGTGAAGAATTTTAAATGTCAGTTTTGCGTTAAAGCGTTTTTTACGGGAGAGGCACTTAAAAAACACACTAGAGTTCACACTAAAGAAAAACCTTTCAAGTGCATCGAATGTGAGAAGACATTTACTCAGAGTAGTAGTCTTAACAATCACATGAAGTACCATACTGGTGAAAAGCCTTACAAATGCGATTCGTGTAAGAAAGAATGTAAATCGCTGAGCAAAACTACTGATGGATTATTCGAGTGTCAAGTTTGCCAAAAAGTCTATTCTTCTCTTGCTAAGCTTAATAAACATAAATCACGACATGGAGAGAAAAAACATAAGTGTTCTTCTTGCGATAAGAGGTTTGCTTTATCTTGGGAATTAAGAACTCACATATCTGTATGGCACGTGGAAGAAAACAACTTGTCTTGTGAATTTTGTGATTATAAAACAAGAGGTAGCAATTCACTCAAGAGCCACGTAATTAGGAAGCACACCAGAGACTTTAAATTTAAGTGCGATGAATGCAATAGCGGTTATATCTGTGCAAAAGATTTGACGAATCACAAAAAAATTGCTCATGAAAGTTTGAGATTTGTTTGCGAATTTTGCTCCAAAGTGTTTCGAAATTGTTATAATTTTAAGAATCATGTGAAAGTACACGATCCTGATTATGTTGAAATGAAATTTCCGTGTCCTCACTGTTCGAAAGTATTTAAGAAATACGAATTGCAGAAACACGTGAAACTTATGCATAGTGGTGAAAGCGGTAAATATTTTTGCGATATTTGTGGGAAAATATTAACGACTAATACTAGTTTAAAAAATCATAAGAAAGTACATAGTGGTGAGAAGAATTTTGTATGTGAAGTGTGCGGTAAAGCGTTTCTTGCAAGATATACACTTAGAAATCATATTAGAGTACACACTAAGGAAAAACCTTACAAGTGTATCGAATGCGAGACGGCATTTTCGCAGAAGAGTAGTTTGAACATTCATATGAGGAAATACGAATTAAAGATACACATGGAGAACGTACACAGTGGGGCAGAGGGAAAATATGTTTGTGATATTTGTGGAAAAAGAATGAAGGCTAGTAGTAGTTTGCAAAAACATAAGAAAATACACACTGGTGAGAAGAATTTTGTCTGCCAGATATGCGGAAGAGCGTTTATTGGGGCACAGGCACTTAAAAGGCACATTAGGGTGCACACTAAGGAAAAACCTTTCAGTTGTACCGAATGCGACAAGGCATTTTCCCAGAAGTGTAGTCTTAATATTCATTTAAGATCGACTAGCAACGCTGTTGGAGCGGCTTTCGAGTGTCCAGTGTGCTACAGAGTGTTTTCTTCTTCTCTTAAACTCTCTAAACATAAATCAAGACATCGAGAGAAAAAGCACAAGTGTTCTTATTGCGACAGAATGTTTCTTCACCTTTTTGAAGTAAAAAAACATGTTTCTGTGCGACATCTGAAAGAGAAGAATCTTGTTTGCGACTCGTGTGATTACAAGACACACTGCAGCACTGCTCTTCGACTACATGTAGTCACTAAGCACACGAGAGATTTTAAATATAAGTGCGAAGTGTGCAATAGAGGTTATTCCATTGCAGGTCATTTGGATCGTCATAAAAAAGTTGTTCATGAAGGTTTTCGATTTGTTTGTGAATTGTGTCCTAAAATGTACAAGAATGAAATTCTATTCAAAAAACATGTAAAACAACACGATCCTAATTACGTCGAGACCAAATTTCCTTGTCCACACTGTTCGAAAGTTTTTAACAAAACTGCTTTAAGAAACCACATCAATTTGATGCATAGTGATCAAAAGGGAAAATATGTTTGCGATATTTGTGGGAAAAGAATGACAACTAATTGTGGGTGGTACAACCATAAAAAAATACATGCCGGTGTGAAGAATTATGTGTGTGATGTGTGCGGCAAAGCGTTTACCTCGGGGCAGTCACTTAAAACTCACATTAGAGTGCACACCAAGGAAAAGCCTTTTAAGTGCCTCTTATGCGAAAAGGCGTTTTCCCAGAAGAGTAATCTTAACATTCATATGAGATCTCAACCAATGAGAAACAAAGTCAAGGAATTRACGTGCGATGTGTGCATGAGAATTTATACCAATTTAGAGAACTTGACTCTTCACAAAGAAATTGATCATGAAGGTGGAATATTCATTTGCGAAGTTTGCTTCAAAGAATACAGGAACTATCATAATTTTAAAAGACATGTAAAACAGCACGATCCGGATCATGTCGTGATTAAAGCCCCTTGTCCACACTGTTTGAAAGTGTACAACAAGCGCACCTTAAAGACCCACATTAAGCAGCAACACACATGCAAGGCTGCAAAATATGTTTGCGATTTGTGTGGACACGAATTTACAACTAACAGTGGATTGTGGAGACATCAGAAAGTCCACAGTGGTGAGAAAAATTTCGTATGTCATCTGTGCGCCAAAGCGTTTTTTTCGAGAACGGCATTTGAAACCCACTTTGTGGTTCACACTAAAGAAAAACGTTTCAAGTGTACGGAATGCAATAAGGCATTTTCTCGCAAGTATGGTCTTTATGTTCATATGCGAGTTCACACTGGGGAAAAACGTAAYAAAAWWTATCCTCGTGATAAGTCGTTTGTGTGTCATGAGTGCGGAAAAGCGTTTCCTTGGAAAAAGGCACTTGAAACTCATATTAGAGTGCACACTAAGGAAAAACCCTTCAAGTGTACACAATGTGATAAAGTATTTGCTCACCAGTCTGGGCTTTTCTACCATATGCAACACCACAATGGTGAAAAACCGTACAAATGCGATTTGTGTAATAAGGAATCTACATCGACGAGCTCTATTGCTGAAGAATTTCACGAGTGTAAAGTCTGTTACAAAGTGTTTCCTACTTCTTTTCAACTCCAGAGACACAAATCAAGACATCGCGAGAGACAACACAAGTGTCCTTTATGCGATAAAAGGTTTATTCTAAAGAGTGAAGTAAAATCTCACATATCTTTGCACCACATTCAAGACAAGATTTTTTCTTGCGAGTCTTGTGATTACAAAACGCATACTAGCGCTCTTCTTCAAGCTCACATAACCAGAATGCATACCAAAGATTTTCAGTTTAGGTGCGATACTTGCAACAAGGGCTTTCTTTATAGAAAGATGTTGAACACTCACATAGAATTTTATCACGAAGGTATGAGACTGGTGTGCGAGTTTTGCCCTAGAGAGTTCATGAATAATAAGCAATTAAATATACATTTGAAAAAACATCATGATCCGAATCATGTCGTAACGAAGTTTCCCTGCCCTGAATGTTCGAAAGTTTTGAGCGACAAATACAGTTTGAAACAACACGTGGAAATGATACATAGAGGTGAAAGGGGAAAATATGTTTGTGATGTTTGTGGGAAAAGATTGATGACGAATAGTAGTTGGAACAAGCACAAGAAAATACATACTGGGGAGAAGAATTATGTATGTCCAGAGTGCGGAAAGGCGTTTATTACGGGACAAGCATTCCAGGTCCATATCAGAGTSCACACTAAGGAAAAACCGTATCAGTGCACAGAATGTGACAAGGCGTTTTCGCAAAAGGGAAGTCTTACTCTTCATCTGCGATATCACACCGGCGAAAGGCCTTATAAGTGCGATGTGTGCAAAAAGCAGTTTATTACCAATACTATTCTRAAAGATCACAAATGTAAAGGTGTGGCCTAA
Protein Sequence
MFIFASELKVHISQRHLQVEKLSCDSCNYEARDKRRLQDHIIRRHTHIFEFKCDVCSKGYSKKCELIRHKEVEHEGMRFVCHFCSKEFKQYHHMKSHVKKHDSDYLGVKFPCPECSKVLGRESTLRTHIEKFHRGEKGKYVCDICGKRVMTNASLNNHKKIHAGEKNFVCNECGKAFITKQILTTHIRVHTKEKPFKCTECDKAFSQKSSLTIHIRKHKRRHKAKTHKCSFCDKMFLHPFELKRHMSNRHLQVEKLSCDTCDFHTHDKSRLRNHIIRRHTRIFQFKCDLCNKGFCHNHELILHKEVNHGGMRFVCQFCSKKFKNYQQMNLHKKQHDSDYLRIKFPCPECSKVLWSKYSLRAQVRSIHKCEEGKYICDICGKRLKSNTGLNKHKKVHTGEKNFVCKVCGKAFVASDTLRSHIRVHTKEKPYKCTECDKAFSQKTSLTIHVRYHTGERPYKCDVCHKQFITRTVLNSHKCKGLVSKSSNKIADGLRVYECKVCYKVFVTSRQLTNHRVSHREKKYKCPSCDRMFIHQSEVKFHVSIQHVKEKSFSCEFCNYKTANRFVFKNHVIKMHTKDFKFKCDVCNKGYIDEPSLTRHKQIAHEGLRFVCELCCKEYKYKKDFERHVKQHDPNHVKIKLPCPHCFKLFTRKYELKRHIDNVHCDVGEKYVCDICGKTMWSKNGWDIHKKIHSGVKNFKCQFCVKAFFTGEALKKHTRVHTKEKPFKCIECEKTFTQSSSLNNHMKYHTGEKPYKCDSCKKECKSLSKTTDGLFECQVCQKVYSSLAKLNKHKSRHGEKKHKCSSCDKRFALSWELRTHISVWHVEENNLSCEFCDYKTRGSNSLKSHVIRKHTRDFKFKCDECNSGYICAKDLTNHKKIAHESLRFVCEFCSKVFRNCYNFKNHVKVHDPDYVEMKFPCPHCSKVFKKYELQKHVKLMHSGESGKYFCDICGKILTTNTSLKNHKKVHSGEKNFVCEVCGKAFLARYTLRNHIRVHTKEKPYKCIECETAFSQKSSLNIHMRKYELKIHMENVHSGAEGKYVCDICGKRMKASSSLQKHKKIHTGEKNFVCQICGRAFIGAQALKRHIRVHTKEKPFSCTECDKAFSQKCSLNIHLRSTSNAVGAAFECPVCYRVFSSSLKLSKHKSRHREKKHKCSYCDRMFLHLFEVKKHVSVRHLKEKNLVCDSCDYKTHCSTALRLHVVTKHTRDFKYKCEVCNRGYSIAGHLDRHKKVVHEGFRFVCELCPKMYKNEILFKKHVKQHDPNYVETKFPCPHCSKVFNKTALRNHINLMHSDQKGKYVCDICGKRMTTNCGWYNHKKIHAGVKNYVCDVCGKAFTSGQSLKTHIRVHTKEKPFKCLLCEKAFSQKSNLNIHMRSQPMRNKVKELTCDVCMRIYTNLENLTLHKEIDHEGGIFICEVCFKEYRNYHNFKRHVKQHDPDHVVIKAPCPHCLKVYNKRTLKTHIKQQHTCKAAKYVCDLCGHEFTTNSGLWRHQKVHSGEKNFVCHLCAKAFFSRTAFETHFVVHTKEKRFKCTECNKAFSRKYGLYVHMRVHTGEKRNKXYPRDKSFVCHECGKAFPWKKALETHIRVHTKEKPFKCTQCDKVFAHQSGLFYHMQHHNGEKPYKCDLCNKESTSTSSIAEEFHECKVCYKVFPTSFQLQRHKSRHRERQHKCPLCDKRFILKSEVKSHISLHHIQDKIFSCESCDYKTHTSALLQAHITRMHTKDFQFRCDTCNKGFLYRKMLNTHIEFYHEGMRLVCEFCPREFMNNKQLNIHLKKHHDPNHVVTKFPCPECSKVLSDKYSLKQHVEMIHRGERGKYVCDVCGKRLMTNSSWNKHKKIHTGEKNYVCPECGKAFITGQAFQVHIRVHTKEKPYQCTECDKAFSQKGSLTLHLRYHTGERPYKCDVCKKQFITNTILKDHKCKGVA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-