Tcas001601.1
Basic Information
- Insect
- Tribolium castaneum
- Gene Symbol
- -
- Assembly
- GCA_000002335.3
- Location
- NC:20052493-20061250[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.074 4.3 7.5 0.5 2 23 13 35 12 35 0.94 2 13 3.8e-06 0.00022 21.0 0.5 1 21 47 67 47 68 0.95 3 13 0.0001 0.006 16.5 0.2 1 23 76 98 76 98 0.98 4 13 0.0031 0.18 11.8 0.6 1 23 104 126 104 126 0.97 5 13 0.00033 0.019 14.9 3.3 1 23 132 154 132 154 0.96 6 13 0.00029 0.017 15.0 2.3 1 23 160 182 160 182 0.99 7 13 0.00088 0.052 13.5 0.7 3 23 349 369 348 369 0.97 8 13 2.5e-06 0.00015 21.6 2.5 2 23 413 435 412 435 0.96 9 13 1.4e-06 8.3e-05 22.3 0.7 1 20 445 464 445 466 0.94 10 13 2.1e-05 0.0012 18.7 1.5 1 23 474 496 474 496 0.99 11 13 0.091 5.4 7.2 2.5 3 23 504 524 503 524 0.98 12 13 0.0003 0.017 15.0 0.2 1 23 530 552 530 552 0.94 13 13 0.029 1.7 8.8 2.0 3 23 560 580 558 580 0.95
Sequence Information
- Coding Sequence
- ATGTTCACCGAGCCAGTGTTTGACAACAAATGGCAAAAATGTAAATTTTGCTCCTCAACTTTTGAAGAATTGAGCGACTATTTAACGCACATTGAATTGGTCCATAAAAACCACAAAACCAATTATTTATTGTCGAGTTTTATGTGTAGCGATTGTGGTAAACAATACAAAACCAAAAACGAGCTCACAAACCACATCAATTCCAAATGCGGGACTGTGAAACAATTCAAATGCAAAATTTGTGGCCAGGAACTGATGTCTGCCGGTTCGCTCTACAATCACATGCTGAGACATAACGGAGTCCGAAGTTTCATGTGCAGATTTTGCGCCAAATTGTTTTTTACAGCAGGGCAGTTGAAAGTGCATGAGCGGATCCATACCCAGGACAAGGCCTACGTTTGTGAGGTTTGTAATAAGGGGTTTTGTCACCGGCAAAGTCTCATCACTCACAGTACCATCCATACAGGGATTAAACCGTACCAGTGTGAGAATTGTGGGAATTCGTTTAGTTGTGTGGGGAATTTGATTAAACACAGGAAGACTCATGCGGATACGTGTGGTCTTATTCCGTTGACTACACACAGGGTTAAGCATCCTTCCACTAAAATTAAAGTTAAGATAAATACGCCGTCTAATTCGAGGCTGAAGACGAATGGACAAATGGACTTTGAAGTGCAACTGGAAGTGGAGAAGGAGTTGAATATTTTGAAGAGTGCTTTATGTAGAAATAATAAGACTGAAGGGAAGAAGGAAGCTACAAATGATGAACAGTGTGCCAAACAAAATCTCATTGACAAAATACAAGAATGCATCCAAAGGAGCGACACTGAAGAGTCATTAAGTGAAAACAACTCCAATGAAAATGTTGAAAAAAATACAGCACTTAATGACACACCAAAAGAAGTTGCACAAGAGATTACGTTATCCACAGGTGGAGGAGTGAAAAGTACCAAAAGAAGACATGTGGAAAGGGATCGAAACTATGAAAATGAGATATCGAAATTTACAGAACAGACAAACTTTGATGATGAAGGATTCGGTGATTGTAAATACTGTGGTAAGAGATATATGAACGTCCGTTGGCTTTACAAACACGTGAAAGAACATGAAAATAACATTCCAATCGGATCCGACCAATCAGGAATCCCTCTCCACAAATGTAGCTGTTGTAAAATGAGTTTTTACACAAAGGAAGAAAGTCTCATCCACCAACAAACACACCATGCCGATATTTTAACATGTCACGAATGCGAGAAAATTTTCTCCAACCGCGACTCCTTACGCTCGCACCAGAAAGTCTTCCATAAAGGAGTCGGTCGTAAAGCTTACATCTACGTATGCGACAAGTGCGGAAAACAGTTCAAACAAAAATCCTACCTGAAAGCCCACGAAGAGCGAAACTGTGATAAAGGCCCCTTTTACGAATGCTCCATCTGCCAGAAACAGTTCTCCAGTGTTTACACCAGGAACAACCACATGCGGGTGCACGATCCGGAGAAGAAGCTCCTGTGCAAGTTCTGTGCCAAAAGTTTCCACTGGAAGGGACAGCTGAAGATCCATGAACGTAGTCACACCGGAGAGAAGCCTTTTGCTTGCTTGTATTGTCCCAAAGCTTTCGCGTATAGGGAAAGTCTGATTACGCACAGTACCATCCATACGGGGATAAAGCCTCATCTGTGTGAAGGGTGTGGTGCTAGGTTTTCCTGTATAGGGAATTTAATTAAACATCGGAGTAGTCATGCGAATGAATGTGGGGCTTGGGCTTACAAAACACAGAAACCTTTACAAAGTAATTAA
- Protein Sequence
- MFTEPVFDNKWQKCKFCSSTFEELSDYLTHIELVHKNHKTNYLLSSFMCSDCGKQYKTKNELTNHINSKCGTVKQFKCKICGQELMSAGSLYNHMLRHNGVRSFMCRFCAKLFFTAGQLKVHERIHTQDKAYVCEVCNKGFCHRQSLITHSTIHTGIKPYQCENCGNSFSCVGNLIKHRKTHADTCGLIPLTTHRVKHPSTKIKVKINTPSNSRLKTNGQMDFEVQLEVEKELNILKSALCRNNKTEGKKEATNDEQCAKQNLIDKIQECIQRSDTEESLSENNSNENVEKNTALNDTPKEVAQEITLSTGGGVKSTKRRHVERDRNYENEISKFTEQTNFDDEGFGDCKYCGKRYMNVRWLYKHVKEHENNIPIGSDQSGIPLHKCSCCKMSFYTKEESLIHQQTHHADILTCHECEKIFSNRDSLRSHQKVFHKGVGRKAYIYVCDKCGKQFKQKSYLKAHEERNCDKGPFYECSICQKQFSSVYTRNNHMRVHDPEKKLLCKFCAKSFHWKGQLKIHERSHTGEKPFACLYCPKAFAYRESLITHSTIHTGIKPHLCEGCGARFSCIGNLIKHRSSHANECGAWAYKTQKPLQSN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -