Tcas001408.1
Basic Information
- Insect
- Tribolium castaneum
- Gene Symbol
- bab1
- Assembly
- GCA_000002335.3
- Location
- NC:9318925-9551403[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 8.2e-18 1.7e-14 52.7 0.0 1 43 324 367 324 369 0.95 2 2 1.1 2.4e+03 -2.1 1.1 6 15 453 462 451 467 0.87
Sequence Information
- Coding Sequence
- ATGCAGCACACCTCGGGCTCCCCCCAGCAGTTCTGCTTGCGCTGGAACAACTACCAATCCAACCTGACCAACGTCTTCGACCAGCTCCTCCAGAGCGAGTCGTTCGTGGACGTCACCCTCGCCTGCGATGGCCACTCCGTCAAGGCCCACAAGATGGTCCTCTCGGCCTGCAGCCCCTATTTCCAGTCACTCTTTTTCGAGAACCCCTGCCAGCACCCGATCGTCATCATGCGGGACATCAAGTGGCCCGAACTCAAAGCCGCCGTTGAGTTCATGTACAAGGGCGAGATCAACGTCTCGCAGGAGCAGATCGGGCCCTTGCTCAAAGTCGCCGAAAGCTTGAAAATCCGCGGCTTGGCCGACGTCAACGGCGAGCAAGACATCGTCGCCCCGACCGGCGAGCTCACCACCAGCACCAGGACCCTCCTGAAGACGGCCTCCACCCCGAACAACGGCTCCGGCGAGTGGGAATGCCGGCCGGAGGGTGACGGCCCGCCACGTGTCAAAAAGAGACGCAGACCTTCCGGAGAACGCAGCAGCCTGAGCAGTCCGGCTGAGAGTGCGAGCACGGAAATTCCGGATCCTCCGCCTTCGGTCGAAATGTCACCGGCGCCGTCCGCGACGCCGCTTCCTTCTTCCGTTTCGAACGAACCCTTGCCGCTAACGTTACCGCTTCCGCAACAACCGCAAGTATCACACGCGTCCTCGGACGATATGGAAATCAAACCAGGCATTGCTGAGATGATACGCGAGGAGGAACGGGACTGTTCAGGAAATCCTTTGAAAAAGCCTAACCTCCAGGCCAAGTTGTTGGAGTCTTCCCATGCTTGGCTCGGCGCCTCTACGTCTTCTATAGCCGCAGACAGCTACCAGTACCAGTTGCAATCCATGTGGCAGAAATGTTGGAATACGAATCAAAGTCTTGTACACAACTTGCGCTTCCGTGAACGAGGGCCGCTGAAATCCTGGCGACCTGAAACCATGGCCGAGGCAATCTTCTCGGTGCTTAAGGAGGGCTTATCCCTGTCCCAGGCCGCCAGGAAATACGATATTCCCTATCCCACGTTTGTTCTGTACGCGAACAGAGTGCACAACATGCTAGGACCGTCCGCGGACGGCGGATCAGATTTACGGCCGAAAGGACGAGGGCGGCCCCAAAGAATTCTGTTGGGGGTTTGGCCCGATGAGCATATACGGGGTGTTATCAGGGCCGTAGTGTTCAGAGACTCGCATCAAATCAAAGACGAACCACACGTCGCATACCCACGAATTCATGACGGCGTCAGCATACACAGCTACCCGAACAACTCGTGCAGCAACGGTTCCGAAGCGAACGTTTCCCCAGGTGCGGCGGCGGCGGCGGCCGTGGCGGCGGTGGCCCAGGGCCTCCGCCAGCAGATGTGCAGCATGGTGGCGGCGGCGCAGCACCAGAGCTCCGCTCACGACACCAACCCCGTGGCCAGCCTGGTGAACTCGCTGGCGTTGGCCGGCCACTGCGGCAACGTGTCCATGTCCAGCAACGGCGCCGCCGCCCCCATGGGCCCCCTGCGCAGCATGAGCAGCCCCGCCGGCAGCATCCAGGACCTGCGCATCAGCCCCGCCGAGTCGGCCCTCGAGAGCCCCATCTCGTCGCCGCTGGGGCTCACCGTCTCCAGCTCGCTGGAGCCCGCCATCAACCTCAACATCGGCAACAGCATGGACGTGGGCATGGGCATGACCTACAAGCCCACCAGGGCCTTCGCCTCCCCCAGGCCCGAGAACCTCTTCCAGGAGGACATCGACGAGCTGGTCAAGCCCATGTCCACGCCCAGGCCCAAGGACGCCATGGCCACCATCAAGATGGAGCCCATGGCGGAGTGTCGCGGCGAATGA
- Protein Sequence
- MQHTSGSPQQFCLRWNNYQSNLTNVFDQLLQSESFVDVTLACDGHSVKAHKMVLSACSPYFQSLFFENPCQHPIVIMRDIKWPELKAAVEFMYKGEINVSQEQIGPLLKVAESLKIRGLADVNGEQDIVAPTGELTTSTRTLLKTASTPNNGSGEWECRPEGDGPPRVKKRRRPSGERSSLSSPAESASTEIPDPPPSVEMSPAPSATPLPSSVSNEPLPLTLPLPQQPQVSHASSDDMEIKPGIAEMIREEERDCSGNPLKKPNLQAKLLESSHAWLGASTSSIAADSYQYQLQSMWQKCWNTNQSLVHNLRFRERGPLKSWRPETMAEAIFSVLKEGLSLSQAARKYDIPYPTFVLYANRVHNMLGPSADGGSDLRPKGRGRPQRILLGVWPDEHIRGVIRAVVFRDSHQIKDEPHVAYPRIHDGVSIHSYPNNSCSNGSEANVSPGAAAAAAVAAVAQGLRQQMCSMVAAAQHQSSAHDTNPVASLVNSLALAGHCGNVSMSSNGAAAPMGPLRSMSSPAGSIQDLRISPAESALESPISSPLGLTVSSSLEPAINLNIGNSMDVGMGMTYKPTRAFASPRPENLFQEDIDELVKPMSTPRPKDAMATIKMEPMAECRGE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01480248;
- 90% Identity
- iTF_01480248;
- 80% Identity
- iTF_01480248;