Trub011153.1
Basic Information
- Insect
- Triatoma rubrofasciata
- Gene Symbol
- lola
- Assembly
- None
- Location
- chr10:24013508-24049961[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 0.26 16 5.8 2.6 1 17 6 22 6 31 0.90 2 16 4.2 2.6e+02 1.9 10.1 1 23 35 58 35 58 0.95 3 16 0.00023 0.014 15.4 1.9 1 21 61 81 61 82 0.95 4 16 0.00067 0.041 13.9 2.8 1 21 100 120 100 121 0.95 5 16 4.6 2.8e+02 1.8 1.7 1 8 129 136 129 137 0.88 6 16 2.6 1.6e+02 2.6 7.7 1 21 375 395 375 396 0.95 7 16 0.065 3.9 7.6 2.5 1 21 405 425 405 426 0.95 8 16 0.00012 0.0073 16.2 1.4 1 21 436 456 436 457 0.96 9 16 0.065 3.9 7.6 4.2 1 21 471 491 471 492 0.94 10 16 5.4 3.3e+02 1.6 0.7 1 11 500 510 500 513 0.82 11 16 3.5e-05 0.0021 17.9 0.3 1 21 518 538 518 539 0.96 12 16 0.74 45 4.3 1.2 1 14 547 560 547 562 0.88 13 16 0.088 5.4 7.2 3.5 1 21 563 583 563 584 0.95 14 16 0.9 55 4.0 0.7 1 9 592 600 592 605 0.85 15 16 0.1 6.3 7.0 7.7 1 21 611 631 611 632 0.96 16 16 0.00037 0.022 14.7 1.0 1 23 640 663 640 663 0.94
Sequence Information
- Coding Sequence
- ATGAGTAATAATTTATTTCCTTGCGATTCCTGCGAAAGGATATACAAGCGTAAATCAAGTCTGCTTTTTCATAAGAAGCATGAATGTGGCAAAGAGGCTCAATTTGCTTGCCCTCATTGTACTTATAAGGCCAAACTTAAACATCATCTGAAATATCATTACCATTCGAAACATTGTTGTTTTCCATGTCCTAATTGTGATAAATTCTACAAACACGATAGAAGTTTGCGAAAACATCTCAAGTTTGAGTGTGGTAAAGAACCACAGTTTAAATGTACTGGCGTGTTTCGCAATAAATTTCATTGTGACAAATGTGGGAAAAACTATAAATACAAAGAAGGTTTATACAATCACCAAAAATATGAATGCGGTGTAGAACCACAGTTTCAGTGTCCTTATTGTCCATACAAAGATGAAGCTGAAATATTCATTGATCAAAATGCAGTTGATCCTTTAGCGGAGCATGATGACGTAGCTAGTGAGGACACACAATATTCTGATAATCCAATTAATCCTGAAAATACTGAGAAGATTGTTCAGGTCAATAGAACAATGAAAAGAAAAAGGAAAGAGGTGTGTAATAGACCTGAATGTTCAGCAGAAAAGGCCGCTGTTGTTCCATCCAAAGAACAGTCAAAGAAATCTCATTCTGAACTTCAGAACGCACAAGTAGTTAATGTAACTACTATGAGAACCATCCAAAGAAATGCAACAACATCTATTATCATGCCAAAAGTTTCTTATTCTGGAAATAGCACGGCACTACGTGACCTACTGAGGTGTACACGAATCGTCAAATCTGCTTCAAGTTCTAGCTCAGAAATGAGTACACTTGCTAGTATGGGTTCAGCTTCCAGAGAAGAAGATCAAAATTCAGAATCTATAAAGAAAGGGGATTCAGCAGATAAATCTTTAAAAAAAGGGGATTCAGCAGATACTGTAACTGTTTTAAGGGGAATAAAAAGAAAAATAATACATCCCGCCATTCCTGCTGTTTCCAATGGAAGCAAAACACCATTATGTGAACTTCTCAGAAGAACTAGAATTGTCAGAACTGTGGAAAGTTCTGGTCCAGATAGGATTGTTAATTGGTCTTATGAATCATCAGATTCGAGAGGACTGTTCCAATGTTCTACATGCTGTAAAGTTTATAAACACTATACCAGCCTTTATAAACATAAGAAATTTGAATGCAGTGGTAAAGAGCCTCAGTTTCAGTGCCCATTCTGTTGTCATCGAGCTAAAAGAAAAGACAATTTAAAAGTTCATATCATAAGGAACATGGGTGGTGAAAATGAAAAAAAATTTCGCTGTCTCATATGCTACAAAAGTTATAAATATAAAGGCAATTTAGCACAGCATCAAAAGTATGAATGTGGTAAACAACCTACATTTCATTGTATTAGAAGATTTTCATGCGAGAAATGTCATAGATCTTACAGATTTTATCCTAGTCTGTATAATCATAAAAAGTTTGAATGCGGCAAAGCGCCACAGTTTCAATGTCCTTTTTGCTCTTACAGAACAGATACCCCACCGAGAAGTGGAATATTCCGATGTCCTAATTGTGGTAAACCCTATAAATACAAGTGGAACATGGTGGCTCATCAGAAATATGAATGCGGTGTAGAACCAATGTTTGCATGCCCTTATTGCTCCCATAGATGCAAACGTCCGGCTAGTATGCATAAATGTGATCTTTGTCGGAAAGGGTTCCTTTCATCAACAAGTTTGAATCATCATAGAAAATATTATTGCGGAAGAGCGCCTCAATTCAAATGCCCTCATTGTCCTTATAAGAGTAAACTAAATGGATACGATATGAGGCAGTATAAATGTGAACGTTGTCATAAAATATACAAGTTGAGGACTAGTTTATGCCATCACAAACGATATGAATGCGGCAAGGATCCACAATTTTCCTGTCCTCATTGCCCTTATAAAGCGAAACAGAAGGGAACGCTCAAAGTTCATATCGGGTCGAAACATTTAGATTTCGATATTGCGCAATTGGTGTCGACGAAGGATTTCTCTGAATAG
- Protein Sequence
- MSNNLFPCDSCERIYKRKSSLLFHKKHECGKEAQFACPHCTYKAKLKHHLKYHYHSKHCCFPCPNCDKFYKHDRSLRKHLKFECGKEPQFKCTGVFRNKFHCDKCGKNYKYKEGLYNHQKYECGVEPQFQCPYCPYKDEAEIFIDQNAVDPLAEHDDVASEDTQYSDNPINPENTEKIVQVNRTMKRKRKEVCNRPECSAEKAAVVPSKEQSKKSHSELQNAQVVNVTTMRTIQRNATTSIIMPKVSYSGNSTALRDLLRCTRIVKSASSSSSEMSTLASMGSASREEDQNSESIKKGDSADKSLKKGDSADTVTVLRGIKRKIIHPAIPAVSNGSKTPLCELLRRTRIVRTVESSGPDRIVNWSYESSDSRGLFQCSTCCKVYKHYTSLYKHKKFECSGKEPQFQCPFCCHRAKRKDNLKVHIIRNMGGENEKKFRCLICYKSYKYKGNLAQHQKYECGKQPTFHCIRRFSCEKCHRSYRFYPSLYNHKKFECGKAPQFQCPFCSYRTDTPPRSGIFRCPNCGKPYKYKWNMVAHQKYECGVEPMFACPYCSHRCKRPASMHKCDLCRKGFLSSTSLNHHRKYYCGRAPQFKCPHCPYKSKLNGYDMRQYKCERCHKIYKLRTSLCHHKRYECGKDPQFSCPHCPYKAKQKGTLKVHIGSKHLDFDIAQLVSTKDFSE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -