Trub005572.1
Basic Information
- Insect
- Triatoma rubrofasciata
- Gene Symbol
- -
- Assembly
- None
- Location
- chr4:25912824-25917143[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 8.1e-05 0.0049 16.8 2.0 2 19 6 23 5 26 0.93 2 11 0.073 4.5 7.5 1.4 2 20 31 49 31 51 0.93 3 11 8.1e-05 0.0049 16.8 2.0 2 19 65 82 64 85 0.93 4 11 0.073 4.5 7.5 1.4 2 20 90 108 90 110 0.93 5 11 0.00015 0.0092 15.9 2.1 2 19 124 141 123 144 0.93 6 11 0.12 7.5 6.8 1.5 2 20 149 167 149 169 0.93 7 11 0.00015 0.0092 15.9 2.1 2 19 183 200 182 203 0.93 8 11 0.12 7.5 6.8 1.5 2 20 208 226 208 228 0.93 9 11 0.00015 0.0092 15.9 2.1 2 19 242 259 241 262 0.93 10 11 0.16 9.5 6.4 1.4 2 19 267 284 267 287 0.94 11 11 0.55 33 4.7 0.4 2 19 751 768 750 770 0.83
Sequence Information
- Coding Sequence
- ATGTCTTCTTCTTTAACCTGTAATAAATGTGGGAAATCGTTTTCAAAAACATACAATTTTAATAGACATAATTCATCGTGTGAAGAAAGAAAATGTTCTAAGTGTGACAATACATTCTATACTTTAGCGAAATTTCTCAAACATACTGAAAAGTGTGGAAATGAACAACAACAAAATATGACTTCTTCTTTAACTTGTAATAAATGTGGGAAATCGTTTTCAAAAACATACAATTTTAATAGACATAATTCATCGTGTGAAGAAAGAAAATGTTCTAAGTGTGACAATACATTCTATACTTTAGCGAAATTTCTCAAACATACTGAAAAGTGCGGAAATGAACAACAACGAAACATGTCTTCTTCTCTAACTTGCAATAAATGTGGGAAATCGTTTTCAAAAACACGCAATTTTACTAGACATAATTCATCGTGTGAAGAAAGAAAATGTTCTAAATGTGACAATACATTCTATACTTTATGGAAATTTCTCAAACATACTGAAAAGTGCGGAAATGAACAGCAACAAAATATGTCTTCTTCTTTAACTTGTAATAAATGCGGGAAATCGTTTTCAAAAACACGCAATTTTACTAGACATAATTCATCGTGTGAAGAAAGAAAATGTTCTAAATGTGACAATACATTCTATACTTTATGGAAATTTCTCAAACATACTGAAAAGTGCGGAAATGAACAGCAACAAAATATGTCTTCTTCTTTAACTTGTAATAAATGCGGGAAATCGTTTTCAAAAACACGCAATTTTACTAGACATAATTCATCGTGTGAAGAAAGAAAATGTTCTAAATGTGACAATACATTCTATACTTTAGGGAAATTTCTCAAACATAGTGAAAAGTGTGGAAATGAACAATCGCGACAACGACTCAACACATTAGAACACGCACAAAAAACTAAACAGTATCGTCTACTTGCCGTCCCATCAGAAGATGGTGTTGTAATTATACCATCATTAAATAGCGCGGTACAAAATATTTGTATAAAGAATATTAATAACATAAAAGATCCCGTTTTATTTTTACAAACCGCGCACAATACAATTTTAAAATATTTAATTAATGCTCTAGAAACTTTGCTAATTTATAAATGTTCAATTTTATTGGAATGTGTTTATAGTAGGGGGGACGTTTCTTCGGGAGAGGGCGAATGTATAGATGCAAATTTTAAAACAAGAACCGAAATTATTGATCATTCCACCCACTTAACTCACTTCCTTCAAGCAGCCTATGAAATAATAATTAACGAACTACAAGAGTTTGAATCTAGCGGATCTGGATGGAAATTACATTCAGTTGATACAGTTGTCATTAGATTAACAAAATATAAACCCCTGTGCGGTAAAGGCTATATTCCTCTACCGAAAGAAATACGCGTTAAACACGCCGTCATTAATGTTCATAATAAAGATGATTACTGCTTTAAATATGCAATATTAAGTCATCTATTGGATGAACCCCAATCATTATCACTGTATAAAAAACTAAATCATTTTTATAATTTCAATGTTGTTTCATTCCCCACCCCGTTGAAAGATATACGAAAATTTGAAAAAGCAAATAATATATCAATAAATGTTTATTCGTTAACCAATACAAATGAAGTGTATCCTGTAATAATAAGTTCAAATTTTAATTCAATTCAACATTTTGATTTATTATTTTTAACAAATGATAATAACACACATTATTGCTTAATAACAAATTTGTCCAGACTCATTTCTTCACAACTCAGCAAACATGAACATAAAATCACCATTTGCAAACGATGCTTTAAAACGTTTAACGGTTCAATATATGAAACAGCGGAAAATAAATTAGAACACCATCTCCTATTTTGCAATGAACATAAACCATGTCAAATTAAGATGCCCCGGGAAAACTCCAATCTTCTACAGTTTACCAATTTCAAAAACACACAGCATGTCCCAATAATTATTTTTGCAGATTTTGAGTCAATACTTTTACCAGTGCATGGTGCACAAGGTTGTCCTACATCATCTTGGTCCAGACAAACACATAAACATGAAGTTTATAGTGTTGGGGCTAAAGTAATCTCCTCATTACCGAATTATCAAAAAGATATTTTCATATATACAGGTCCTAACGCAGTAGATCATTTTATGGATTATTTGCATTCAGTTGCGAAAGAAGTGGGATCTTTATATAAAACAATTATTCCAATGAAAACTTTAACCAATCAGCAACAACTAGATTTTGAAAACGTTAGTTATTGTGGAATTTGTGGTAAACAGTTTGAATTTCTAGAAATGAGAGTAAAACATCATGATCACTTGACGGGGGATTTTCAGTTTGCCGCACACAATGTATGTAATTTACAATTTCAGTTACCCAATTTCATTCCAGTCTTTATGCACAATCTTAGCGGATATGACGCCCACCCAATAATATTATCTTTGGGGAAAGATGATGGGGAAATAAGCGTTATACCAAATTCAGTGGAAAAATACATTAGTTTTTCCAAAAAATTTTCCGATTGTTCTTTATCACTTAGGTTTTTGGATTCTTATAGGTTTTTACCAGACAGTTTAGAAAATCTTGTAAATAATTTAACAGAATATCCACATATGGAAAAAGAATTTCCAGACAGTGAAAAAAGGAAGCTGTTACTTAGAAAAGGTATCTATCCATATTCATATATTACAAGCGTGGACAAATTAAATCAGCACTCTCTGCCTGATAAACAGTATTTCCATAATGATTTAACTGATGAATCCATTTCCAATAATGATTATGCGCATGCTCAACATATTTGGAAAACATTTCATATAGCATCTCTTAAGGAATACACAGAATTATATCTCACATGTGATATAATATTATTGGCCGATATTTTTGAACAGTTTAGAAGTGTTTGCGAAACTATTTATAAAATCGATCCTTGTTGGTATTTTACAATACCCGGTTTAGCATTTGATGCTTGTTTAAAGTGTACAAATATCCAACTAGAACTATTAACCGACTATGATAAACTGCTTCTATTTGAATCTGGAATTCGTGGGGGAATAACTGCGTGTGTAACAAGACATTCAAAAGCAAATAATCCATATATACCTTCTACTTATGATCCTACACAGCCACACAACTACATATTATATATAGATGTTAACAATTTATATGGGCAAGCTATGAGTGAATACTTGCCTTATGGGGGATTTGAATGGTGTGAAAATAAGGATTTAGATGTTACCAAAGTGGGTGATGATAGCGATATTGGTTTTATTTTAGAAGTTGATGTGCACATACCTATTCATTTACATGATTATTTCAATCAGTTTCCACCTCTACCTCACCATCAGAATAAAAAGCTTTTTACCACTCTTAATGATAAACATCACTATATAGTTCATTATAGAAATTTGAAACAGGCTCTCTCAATGGGCGTAGTTGTTAAAAAAGTTCATAGAATATTACAATTTAATCAATCCCCCTGGCTCAAACCATACATAGAATTGAACACCAATATGAGAAAAAAAGCTACAAATAATTTTGAGAAAAATTTCTATAAACTAATGAATAATTCGGTTTTTGGCAAATGTATGGAAAACATGCGAAAAAGGATGAAAATTAAATTAGTAACTTCAGAACGAGCATTATTAAAATTATCTAAAAGACCAAACTTTAAAGATCGTACTATTTTCAATGAAAACGTTACCGCGGTACATTTAGAAAATGAAAGTATCTATATGAACCGTCCATTGTACTTGGGTTTTTCGATTTTAGACATTTCCAAAATTTATATGTACAATTTTCATTATTTTGTTATGTTAAATTTTTACAATGCCGCATCACTACGGTTACTATACATGGATACAGACTCGTTTTTATACAACATTCAAACCAATGACGTATATGATGACATAATCACATTAAAAGAACATTTTGACACCTCCAACTATCCTATTACACATAAATGTTTTTCAAATTCAAATAAAAAAGTGTTGGGGAAATTCACTGATGAAACCGGTGGAAATCCTATTGAAGAGATGGTAGCATTAAGGCCTAAAATGTATAGTATTAAAATATATCAAAAAGATATCATTAAAAAATTAAAAGGTATTGCAAAAAGTGGTGTGAATAAAATAGATTTTTCTGATTATTTAAAACAGTTGGAAAACAGAGACTATACTCCACATGCAAAATTCAAAATTATTCAATCTAAACTACATAGAATATACACTTATGAAATTAATAAAAAAAGTTTGTCATTTTTTGATGATAAACGTTTTATTCTAGATAACGGAATTGACACACTAGCATTTGGACATTATAAGATCTGA
- Protein Sequence
- MSSSLTCNKCGKSFSKTYNFNRHNSSCEERKCSKCDNTFYTLAKFLKHTEKCGNEQQQNMTSSLTCNKCGKSFSKTYNFNRHNSSCEERKCSKCDNTFYTLAKFLKHTEKCGNEQQRNMSSSLTCNKCGKSFSKTRNFTRHNSSCEERKCSKCDNTFYTLWKFLKHTEKCGNEQQQNMSSSLTCNKCGKSFSKTRNFTRHNSSCEERKCSKCDNTFYTLWKFLKHTEKCGNEQQQNMSSSLTCNKCGKSFSKTRNFTRHNSSCEERKCSKCDNTFYTLGKFLKHSEKCGNEQSRQRLNTLEHAQKTKQYRLLAVPSEDGVVIIPSLNSAVQNICIKNINNIKDPVLFLQTAHNTILKYLINALETLLIYKCSILLECVYSRGDVSSGEGECIDANFKTRTEIIDHSTHLTHFLQAAYEIIINELQEFESSGSGWKLHSVDTVVIRLTKYKPLCGKGYIPLPKEIRVKHAVINVHNKDDYCFKYAILSHLLDEPQSLSLYKKLNHFYNFNVVSFPTPLKDIRKFEKANNISINVYSLTNTNEVYPVIISSNFNSIQHFDLLFLTNDNNTHYCLITNLSRLISSQLSKHEHKITICKRCFKTFNGSIYETAENKLEHHLLFCNEHKPCQIKMPRENSNLLQFTNFKNTQHVPIIIFADFESILLPVHGAQGCPTSSWSRQTHKHEVYSVGAKVISSLPNYQKDIFIYTGPNAVDHFMDYLHSVAKEVGSLYKTIIPMKTLTNQQQLDFENVSYCGICGKQFEFLEMRVKHHDHLTGDFQFAAHNVCNLQFQLPNFIPVFMHNLSGYDAHPIILSLGKDDGEISVIPNSVEKYISFSKKFSDCSLSLRFLDSYRFLPDSLENLVNNLTEYPHMEKEFPDSEKRKLLLRKGIYPYSYITSVDKLNQHSLPDKQYFHNDLTDESISNNDYAHAQHIWKTFHIASLKEYTELYLTCDIILLADIFEQFRSVCETIYKIDPCWYFTIPGLAFDACLKCTNIQLELLTDYDKLLLFESGIRGGITACVTRHSKANNPYIPSTYDPTQPHNYILYIDVNNLYGQAMSEYLPYGGFEWCENKDLDVTKVGDDSDIGFILEVDVHIPIHLHDYFNQFPPLPHHQNKKLFTTLNDKHHYIVHYRNLKQALSMGVVVKKVHRILQFNQSPWLKPYIELNTNMRKKATNNFEKNFYKLMNNSVFGKCMENMRKRMKIKLVTSERALLKLSKRPNFKDRTIFNENVTAVHLENESIYMNRPLYLGFSILDISKIYMYNFHYFVMLNFYNAASLRLLYMDTDSFLYNIQTNDVYDDIITLKEHFDTSNYPITHKCFSNSNKKVLGKFTDETGGNPIEEMVALRPKMYSIKIYQKDIIKKLKGIAKSGVNKIDFSDYLKQLENRDYTPHAKFKIIQSKLHRIYTYEINKKSLSFFDDKRFILDNGIDTLAFGHYKI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01479697;
- 90% Identity
- iTF_01479737;
- 80% Identity
- -