Trub005166.1
Basic Information
- Insect
- Triatoma rubrofasciata
- Gene Symbol
- -
- Assembly
- None
- Location
- chr1:87315738-87319374[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.00035 0.021 14.8 1.0 1 23 90 113 90 113 0.96 2 17 0.0013 0.076 13.0 1.5 1 23 117 139 117 139 0.98 3 17 1.4 88 3.4 0.6 1 12 195 206 195 211 0.82 4 17 0.3 19 5.5 1.3 2 21 332 350 331 351 0.92 5 17 0.071 4.3 7.5 0.3 3 20 439 456 437 461 0.91 6 17 0.054 3.3 7.9 0.0 2 21 535 554 534 555 0.93 7 17 0.011 0.7 10.0 1.1 2 22 559 579 558 582 0.88 8 17 0.028 1.7 8.8 1.9 5 23 606 624 603 624 0.95 9 17 0.014 0.87 9.7 0.4 3 23 633 654 632 654 0.94 10 17 0.17 11 6.3 3.6 1 23 659 681 659 681 0.86 11 17 0.027 1.7 8.8 4.5 1 23 684 706 684 707 0.92 12 17 0.0038 0.23 11.5 0.4 2 23 711 732 710 732 0.96 13 17 8.4e-05 0.0051 16.7 0.6 2 23 739 760 738 760 0.96 14 17 0.00019 0.011 15.6 0.2 1 23 766 788 766 788 0.96 15 17 0.16 9.5 6.4 5.0 1 23 793 815 793 815 0.98 16 17 9.7e-07 5.9e-05 22.8 0.9 1 23 819 841 819 841 0.98 17 17 0.00028 0.017 15.1 0.4 1 20 847 866 847 868 0.95
Sequence Information
- Coding Sequence
- ATGAGTAGTCAAGATTCAGTTTGTTGGGAGTGTGCAGAGAGAATTAATAAGGTCGACACATATGAACAGAAAATTGATGTTATTAAAGAGAAAATTGTTAATCAAGTTGTGAATAAGTATAAATGTGTAGAAGTTTGTTTGCAATCAACTCCAGAAGAGCAAGAAAATTTAACTTTTACAGAGAACTATGAACCTGAACCCGAGCCGGAGATAAAGGAAAAACAGCAAATTTTGGAAGAAAGTAACCCAAGAAAAAGGAGAAGAGGTTTTAACTGTAACATTTGTGAAAAGAAATATATGTCCAGTGCCGCTTTGGCCCACCATATTAGTAGACAACACCCACCAGAATATCCATGTGAAGAGTGTGGTCAGGTTTTACATTCACAAGCGAAGTACAAAACTCATAAAAGGTCGCATACAATAAATGAACCAGCTAAGGAACTGAATTGCGTTCTCTGCGGTTTCAAAGCTTATAATACCGAAGTTTATTGTAGACATGTATGTAATTCTGCTATTGTTTCATTGGCTTGTATTACATGTAAAAAAAGATTCGTTGATACTAAAAAGGATGGACAACAGAATTATCAGTGCCAAGAGTGTACTCGCCGTTATCAGGAAAAAACTAACACAACAACTGTTGGTGAAGCGGCTCACTCACCTGATAAAGACTCAGCAGCTGCCACTGATGCAGATTTAAGTGCTGTGGCTCCAGAGTTTTTAAAATTAACGGAGGAGATACCAACTGAGGAAGACGGTGCAGATGTAGGCAACGATGATGCATTAACAGATATGTTATTAGAAGTGGAAGAAGGTGAAGAAGAAGCGGATGATAGAAGAGGAGATAATGAACATCTTCCAAAACAAGAACATTTCATAAAAGAAAATAATCAAATTGACCAAAAACAAATCGTAGAGGAATATGTGGAAATTGAATCTGTGCAAAAATCAGAGCACATTGAAAACAATGGCATTACTAAACCAGCATCTTATTTAAAGTGTACAACTTGCAATGAAGAATTTGAACTGAGTCAGTTGGCCACGCATCAGTGTTTCGCATCTGGTACACTTGTAGAATTTGCCGAAGTTGAACATCCTACATTAACTAAAGCCGAACAGTTTATTTCAATGCCAGTTTACCTTGAAGGGCAACAAGAAGATGACCGATACATAACTAGGACAACCACTAATGAACCGTTATCTGAAGGAGCAGTAATTAGCAAAGGTTCTCGCCGCCGAAGAAGAAGAATACCGAAAATCCCAGCACATGAAAATTCATACATAGATGTAACTGATGATAGTACTACTAAAATGAATTGTAAAACTTGTCAAGCGGAATTTAAGTCAATTAGCCTTATGCGTAGACATTGGGATCTGACAGGACATTCACGGGAAGTTTGTACAACAACAATTGAGCTAAACAAGATTAAGGATAAAAATAATCAGACAGAGCATTCGTTCAAGGTTGTAAAACAAAATTTTAACATACGTGCTAATGTACCCGGGCAAAATGATGATGAAATTAAGAAACAAAATCAATCGTATATGGATTGTTTTGTACGCGTGATGGATATTGAAAATAATCCCCCTCTGGTGAATGAAAAAGAATGTGATACGTGTGGTTTAATGTTCCCAAATGAAGAGATTTTAAAGAATCATCAACAGATTGAATGTTTAAATTGTATGACATGTGATATTAAGTTCTTTGATAACAAACTGTTGAGAAAACATTATCAGTATACTGGACATGCACACAAAATATACAAGCAGAAATTAGCCATAGTAAAACAAAAAGAAGAGACACATCCCCATCAGTGTACATGTGGGAAAGTGTTTCAATCTAGATTTTTATTAGGAAAACATTTACAAGTTCATTATAAGGGTACTAACAAAGGTGCCTGCCATTATTGCCTTTTGGAATTTGAGGATAAATCTCAAATACAGCAACATTTATTAGAAGCACATGGTGCACATTTATTTAAATGCCAACATTGCGATAGAACTTTTCTTAGTGAATCAGTTAGAAATAGACATGAAACAAAACATAAAGAATTTCTTTGCAAAATTTGTAATATAAAATATAAAACGCATAGAGCGCTTACATTGCATACAGAACAACATCATAGAACCATGTCTTGTAGATTGTGTGGAAAAGTGATTGTCGATATAACCTCATTGAGACGACATGAGAAGAGACATTTTTATGATAAAGGATTACAATGTGATTTATGTCGTAAAACGTTTAGAAATAAAGCCGCATTATTATTGCATACAAAAGCACATGCTGGAGAAATTGTACACCCATGTAGTACTTGTGGTCTAGGATTTGCTACACAACAATCATTGGAAGAACATCAGATATTGCATGTCAAAAATGAATATACTTGTCGAAAATGTAATCTTGTCTGTCATTCAAGAGCTTCTTTTTGGATGCATTTGAAATTACATGGATCCGCTTTTGTTTGTAATATATGTAATAGAACATTCAGAGATACATCATTATTAGCAATACACAGGCGAAGACATTACAATGTACGACCGTATCAGTGTCCACATTGTCCACGAGCGTTTTCCATTGGAGAAACTTTACGAAAACATATACATCTGGATGTAGTACATACTCGCGTTGAACAGGTTGACAATGATCGAAAAACCCATGGTAGAATACCATCTTTACCGTTGAATGCCACTGACGAGGATATATTTCATGCGGCGGACACACTTATCGCCGATGATTCAATAATGTTTAATGATTATCATACAAAAGAAGTTACTGTGGAAACTATACCAAGTAATGAATTGATTAGTAATGAAGTCGTAGTTGAAACTACAGAACTTTTTGAAGAAATTATTCTTCCTTAA
- Protein Sequence
- MSSQDSVCWECAERINKVDTYEQKIDVIKEKIVNQVVNKYKCVEVCLQSTPEEQENLTFTENYEPEPEPEIKEKQQILEESNPRKRRRGFNCNICEKKYMSSAALAHHISRQHPPEYPCEECGQVLHSQAKYKTHKRSHTINEPAKELNCVLCGFKAYNTEVYCRHVCNSAIVSLACITCKKRFVDTKKDGQQNYQCQECTRRYQEKTNTTTVGEAAHSPDKDSAAATDADLSAVAPEFLKLTEEIPTEEDGADVGNDDALTDMLLEVEEGEEEADDRRGDNEHLPKQEHFIKENNQIDQKQIVEEYVEIESVQKSEHIENNGITKPASYLKCTTCNEEFELSQLATHQCFASGTLVEFAEVEHPTLTKAEQFISMPVYLEGQQEDDRYITRTTTNEPLSEGAVISKGSRRRRRRIPKIPAHENSYIDVTDDSTTKMNCKTCQAEFKSISLMRRHWDLTGHSREVCTTTIELNKIKDKNNQTEHSFKVVKQNFNIRANVPGQNDDEIKKQNQSYMDCFVRVMDIENNPPLVNEKECDTCGLMFPNEEILKNHQQIECLNCMTCDIKFFDNKLLRKHYQYTGHAHKIYKQKLAIVKQKEETHPHQCTCGKVFQSRFLLGKHLQVHYKGTNKGACHYCLLEFEDKSQIQQHLLEAHGAHLFKCQHCDRTFLSESVRNRHETKHKEFLCKICNIKYKTHRALTLHTEQHHRTMSCRLCGKVIVDITSLRRHEKRHFYDKGLQCDLCRKTFRNKAALLLHTKAHAGEIVHPCSTCGLGFATQQSLEEHQILHVKNEYTCRKCNLVCHSRASFWMHLKLHGSAFVCNICNRTFRDTSLLAIHRRRHYNVRPYQCPHCPRAFSIGETLRKHIHLDVVHTRVEQVDNDRKTHGRIPSLPLNATDEDIFHAADTLIADDSIMFNDYHTKEVTVETIPSNELISNEVVVETTELFEEIILP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01478990;
- 90% Identity
- -
- 80% Identity
- -