Trub003833.1
Basic Information
- Insect
- Triatoma rubrofasciata
- Gene Symbol
- -
- Assembly
- None
- Location
- unanchor1174:207120-213476[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.0061 0.37 10.9 5.5 1 23 206 228 206 228 0.98 2 12 0.0013 0.08 13.0 4.3 1 23 234 257 234 257 0.98 3 12 0.00036 0.022 14.7 0.5 1 23 263 285 263 285 0.98 4 12 0.0021 0.13 12.3 1.1 1 23 294 316 294 316 0.98 5 12 0.0015 0.089 12.8 4.9 1 23 322 344 322 344 0.97 6 12 0.038 2.3 8.4 1.4 1 23 350 373 350 373 0.95 7 12 0.0008 0.048 13.6 0.1 1 23 417 439 417 439 0.98 8 12 0.37 22 5.3 2.2 1 23 446 469 446 469 0.90 9 12 0.0037 0.22 11.6 1.9 3 23 477 497 475 497 0.93 10 12 1.8e-06 0.00011 21.9 4.8 1 23 503 525 503 525 0.99 11 12 0.00039 0.024 14.6 0.5 1 23 534 556 534 556 0.97 12 12 2.1e-05 0.0013 18.6 0.7 1 23 563 586 563 586 0.97
Sequence Information
- Coding Sequence
- ATGAGTTCATTAATGACAAATCATTTAGAACAAGAACTAGATGACCCATGTAAATTTCTAGAAGTGGTTATAGAAACTGATAACGATTTTCCGAGTCAAGTAAAAAAAGAATTGCTTAAAAATGAATTTCCCATCAAAAAGGATTCCATATTTAATAATGAATTGGAAGTGACTATAACCAAATTACCTCAAGTGAAAAATAGTTTGGATAATCCAAAAGTGCAAGGATTCAGTAATGGTAAAAAAATTAAACAAGAAATAAGTAATAAAAATCAAATTAAACAAGAATTCAGTGATGATTTTGATGAAGACGATCCAGATTACTCAGCAGAAGAAGACGAGCCTGAAGATGAAGAAGAAGAAGAAGAAGATGATGATGATGATGACGATGAAGACTACATTGATGAAGATGCAGATATTGACGATCCTACCATTTGTAATTTGGAAGGTTTTTTGCATGTTGAAATCAAAACAGATATAAAGGAAGAATCTACATCAGGTGATGGAGATCAAGATCTATCAGGAGAGCAGAGTGACCAGAGTGAAAAGCCACGAGTAAAGAATAAAACGATTGGTTACAAAATAGAATTAGATGATGAAACCAAGGAAAAAATTTACTCATGTTCTGGTTGTAAGTATAAAACAAAGAGACGTTGTGATTTGAAAGATCATTTGACCAAACACACGGATGACCGGCCTTATTCATGTAAACTTTGCAAATATAAGACTAGACTGCGCTCATATTTGAGGATACATATGAAGAAATTTCATCCAGAAGAGATACCGTATGTATGCGACAAATGCGATTATAAAACAACATTAATAGATGATCTAAATAAACATATGGTAAAACATTCGGACGATCCAACAGCCGGTCTGTTTAAATGCAAACAGTGCCCGTATGCAGCTAGATATCAATGCGATTTAAAAGTCCACGCTATGGTACACTCAGACGAACGACCATACGCTTGTGGTTTATGCGATTATCGATCAAAACGTAAATGCCATCTAAATGTTCATATGACCCGCCATACTGGTGAAAAACGTTTCTCATGTACCTATTGTGAATATAAAACTAGACTACGAGTTGAATTGAGTTCACACGTTTCTTCTAAACATCCAGAGATTAAACCATATCCATGTATTCTATGCGACTTTAAAGCCGGTCTTGAACGTGACCTAGAGAATCATGTATCAAAACAGCATGCAGTTAGATATACAACTAAACAGCATTCAAAAAGAAATGTCTTCCCATGTAGTTTGTGCAGTGTGAAAGCTAAATCAGCAGAAGATCTGGCAAAACATATGAAATCACACGGCGATAATACAAAACCATTTTCATGTAATATTTGCGGTTTTAGCGCCTGCCAGAAACAGACAATTGATCTGCACACCAGTAAACAGCATAAACAATTGAAAGAATTATTTTGTAAATTTTGTCCATTTAAAACATTTCAACCGCGTTCACTTAGAAGACATATACTTAGACATACCGAGGTACGATCATACGAATGCAACTATTGCGGTGCCAGATTTAAACATAGTACACATTTAAATAATCATATTACCACGCATACAAATATCGATAAGATTAATATATTTGCTTGCCCAATTTGCGATTTTAAATCAAAAACAGCATTTGAATTGAGGAATCATTCGCTGACACACGCTGGGGAACGTCCGCGACATACATGCCAATATTGTGGTGTCGGTTTTGCACAGGCCACGGACATGCGGAGGCATATAATTACTAAACACATTATGGCCAATAATACAGGACCTTGA
- Protein Sequence
- MSSLMTNHLEQELDDPCKFLEVVIETDNDFPSQVKKELLKNEFPIKKDSIFNNELEVTITKLPQVKNSLDNPKVQGFSNGKKIKQEISNKNQIKQEFSDDFDEDDPDYSAEEDEPEDEEEEEEDDDDDDDEDYIDEDADIDDPTICNLEGFLHVEIKTDIKEESTSGDGDQDLSGEQSDQSEKPRVKNKTIGYKIELDDETKEKIYSCSGCKYKTKRRCDLKDHLTKHTDDRPYSCKLCKYKTRLRSYLRIHMKKFHPEEIPYVCDKCDYKTTLIDDLNKHMVKHSDDPTAGLFKCKQCPYAARYQCDLKVHAMVHSDERPYACGLCDYRSKRKCHLNVHMTRHTGEKRFSCTYCEYKTRLRVELSSHVSSKHPEIKPYPCILCDFKAGLERDLENHVSKQHAVRYTTKQHSKRNVFPCSLCSVKAKSAEDLAKHMKSHGDNTKPFSCNICGFSACQKQTIDLHTSKQHKQLKELFCKFCPFKTFQPRSLRRHILRHTEVRSYECNYCGARFKHSTHLNNHITTHTNIDKINIFACPICDFKSKTAFELRNHSLTHAGERPRHTCQYCGVGFAQATDMRRHIITKHIMANNTGP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01301801;
- 90% Identity
- -
- 80% Identity
- -