Trub010971.1
Basic Information
- Insect
- Triatoma rubrofasciata
- Gene Symbol
- lola
- Assembly
- None
- Location
- chr10:25414890-25457617[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.00028 0.017 15.1 3.9 1 21 98 118 98 119 0.97 2 18 0.0088 0.53 10.4 6.0 1 23 127 150 127 150 0.91 3 18 0.0049 0.3 11.2 4.7 1 21 166 186 166 187 0.94 4 18 0.6 37 4.6 0.3 2 13 196 207 195 208 0.87 5 18 1.4e-05 0.00087 19.1 1.4 1 21 221 241 221 242 0.95 6 18 0.0017 0.1 12.6 4.9 1 23 251 274 251 274 0.97 7 18 0.0045 0.28 11.3 2.1 1 21 317 337 317 338 0.92 8 18 2.1e-05 0.0013 18.6 0.9 1 21 350 370 350 371 0.94 9 18 6.7 4.1e+02 1.3 1.3 1 13 380 392 380 394 0.83 10 18 0.00018 0.011 15.7 1.7 1 21 407 427 407 428 0.95 11 18 1.1e-05 0.00066 19.5 3.2 1 20 442 461 442 463 0.95 12 18 0.00049 0.03 14.3 0.8 1 21 479 499 479 500 0.95 13 18 0.21 13 6.0 1.3 1 15 508 522 508 522 0.93 14 18 0.00015 0.0094 15.9 0.2 1 20 530 549 530 550 0.95 15 18 4.4e-05 0.0027 17.6 0.5 1 20 566 585 566 586 0.96 16 18 0.39 24 5.2 0.3 1 20 595 613 595 617 0.83 17 18 0.0014 0.086 12.9 2.3 1 21 668 688 668 689 0.96 18 18 0.011 0.68 10.0 1.5 1 23 697 720 697 720 0.93
Sequence Information
- Coding Sequence
- ATGACTTGGCGGCGATCAAAGAGTTACTATTCCATGAACAGCGTAATTATTGGCCCAAGTTTGACAGGATATACAAATGTGACAAATGCAACAGAAGTTATCGGTCAAAGACCAGCCTACGTACACATGGACGATTTGAATGTGGAATTGAACCACAATTTCATTGTGATTTCTGTGACAACCAGTATACTTGTTTACGATGTAATAAATCTTATCGTCATAAAAGAAGTTTGGCCGATCATCAAAGGTATATACAACTGGACAGAGCGAATATTATTTCCAAAAGGACGTTATACCTGTAAAGGATGTGGGAAAAGTTATCATCATGCGCAGTCATTATATAAACATAGACGATTTGAATGTGGCAAACGACCACAATTTCAATGCCCTTTCTGTTCGTATTGTGCTAAACACAAAGTACACTTGAAACGTCATCTAGTCGGGCAACATTGCCATGAACGGAAAGCAACATCTATATTGATACAAGGTGATAAATTTGCCTGTGGGAAATGTCATAGAGTATATAAATATAAACACAATTTAGTTTACCATCAAAAACATGATTGTGGTCAACCGCAAGAATTAAGATGTCCACATTGTCCGTTCAGATACACATCTGCATACATTTTTGATGAAGTGAAAAATTATGATGGTGTTAAGTTTATCTGCAATCTATGCAATCGTTCTTACACACAACAGAGAAATTTGTTACGCCATCAAAAGTATGAATGTGGCGGTGTTGCACCAAGATTCAATTGTGCACATTGTTCATACAGAGCCAGACAGCGCGCTCATCTCAATAAACACATGTTAACTAAACATAAAATAAGACGACAACCAAAGGCCAGTTGTATCAATTTCTTGTTGTTTCATTCGGAGGAGAATAAATATAAGTACTTAATAGAATCAATTTATGATCGCAGTCCAAGATCGGCGGAAGTGAAAGATTTCAAATGTACAAAATGTGGGCGAACTTATATGCATAAAGGAAGTTTAGTATTTCACCAAAGAAATGAATGCGGCATACCATATGTTCCAAGAGTGCGTTTTTCATGCGATGCTTGTCCAAAATCATATACAGATAGATCGAATTTAAATCGCCATAAGAAATATGAATGCGGTGACAAAGAGCCAGTATTCAGATGCCCTTTTTGTCCGTACAAAGGAAAACAGAAATTTTTACAAAGCGACACCACTGATTTTGCAGCACCAAAAAGGCATTATTGTTCTGTTTGTTTTAAAGGTTATGGAAAGAAGAGTAATCTAAATCGCCATATAAGATACGAATGTGTTGGTGGCAGTTATACAGTGCAGAATTCTCGGTTTGTCTGTATGAAATGTGGTAAATCATATGCGAGAAAACATCATTTAACTAGGCATCAAACATATGAATGCGGTGATGAAGATACTACTATATCGCCCAATAAATCGCTTTATGTATGCCCACGTTGTGGCCGTTCTTATAAGTACAGATCTAGTAAATATGTACATATGAATTATGAATGCGGTGTTGAACCAAAATTTCAGTGCCCCTATTGTCCATATAAAGCTAAACAGAAAAGTAATGGTCGACGTAGACGTCCAACATATAATTGTGGTGGATGTCGTAAACGTTTTACATCAATTGAGAATCTCAATCGTCATACAGTTGATTGTAAATATTATCAATGTTATGGTCGATGCAGACGTCCATCATATAATTGTGATGGGTGTTACAAACGTTTTACATCACTTGAGAATCTAAATCGCCATACAGTAGATTGTAAATATTATCAATGTACTTATGATTGCCCATATTGTGATGTTACTAGCAGTTTAAAAGGTTTCAAAAAACATGTTGTCGACGTGCACGGTAAACGAATAATTTTGCAAGGAAAATCTGATAGAAGTCTCTCCTCAGAAATTGATTTCAATCCAAGACAAGCGGAGAGTAAAGCTTTTAGTAGCAAGTCGTTGATATTACCAGGCAGTAGTTCAGAAATAAATTGTGAAGAAACGCTTTACAGTTGTAACAATTGTTCAAGAAAATATAAATATCGTACTAGTTTGTTGAATCATTTGCGATACGAATGTGGTAAAAAGGCAATGCATGTCTGTCCATTTTGCACATATAAATCCAATCTTAAAGGCAATCTAAAAAAACATGTTATCAATTTGCATGGTGAACTTATAAAACCAGAAACTTCTGTGATCAACTTGTAA
- Protein Sequence
- MTWRRSKSYYSMNSVIIGPSLTGYTNVTNATEVIGQRPAYVHMDDLNVELNHNFIVISVTTSILVYDVINLIVIKEVWPIIKGIYNWTERILFPKGRYTCKGCGKSYHHAQSLYKHRRFECGKRPQFQCPFCSYCAKHKVHLKRHLVGQHCHERKATSILIQGDKFACGKCHRVYKYKHNLVYHQKHDCGQPQELRCPHCPFRYTSAYIFDEVKNYDGVKFICNLCNRSYTQQRNLLRHQKYECGGVAPRFNCAHCSYRARQRAHLNKHMLTKHKIRRQPKASCINFLLFHSEENKYKYLIESIYDRSPRSAEVKDFKCTKCGRTYMHKGSLVFHQRNECGIPYVPRVRFSCDACPKSYTDRSNLNRHKKYECGDKEPVFRCPFCPYKGKQKFLQSDTTDFAAPKRHYCSVCFKGYGKKSNLNRHIRYECVGGSYTVQNSRFVCMKCGKSYARKHHLTRHQTYECGDEDTTISPNKSLYVCPRCGRSYKYRSSKYVHMNYECGVEPKFQCPYCPYKAKQKSNGRRRRPTYNCGGCRKRFTSIENLNRHTVDCKYYQCYGRCRRPSYNCDGCYKRFTSLENLNRHTVDCKYYQCTYDCPYCDVTSSLKGFKKHVVDVHGKRIILQGKSDRSLSSEIDFNPRQAESKAFSSKSLILPGSSSEINCEETLYSCNNCSRKYKYRTSLLNHLRYECGKKAMHVCPFCTYKSNLKGNLKKHVINLHGELIKPETSVINL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -