Trub006828.1
Basic Information
- Insect
- Triatoma rubrofasciata
- Gene Symbol
- -
- Assembly
- None
- Location
- chr5:14641064-14654475[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 4.5e-06 0.00028 20.7 1.0 1 23 117 139 117 139 0.98 2 14 4.4e-06 0.00027 20.7 0.3 1 23 145 167 145 167 0.98 3 14 3.3e-05 0.002 18.0 0.3 1 23 273 295 273 295 0.98 4 14 0.016 0.99 9.5 1.9 1 23 301 324 301 324 0.97 5 14 0.0019 0.12 12.5 0.8 1 23 356 378 356 378 0.93 6 14 0.0046 0.28 11.3 0.9 1 23 385 408 385 408 0.94 7 14 0.00012 0.0074 16.2 0.7 1 23 410 432 410 432 0.95 8 14 1.9e-05 0.0011 18.8 3.2 1 23 438 460 438 460 0.98 9 14 0.018 1.1 9.4 0.1 3 23 469 490 468 490 0.97 10 14 2e-06 0.00012 21.9 0.6 1 23 498 520 498 520 0.98 11 14 0.0083 0.5 10.4 0.2 3 23 528 548 526 548 0.97 12 14 1.2e-05 0.00075 19.3 0.3 1 23 554 576 554 577 0.96 13 14 0.45 27 5.0 0.2 1 22 589 610 589 611 0.85 14 14 7.6e-06 0.00046 20.0 0.2 2 23 906 927 905 927 0.97
Sequence Information
- Coding Sequence
- ATGGCTAATTCATTAGTGACATCTGAAGAAAACTACAGTTTCAATTTGGAATGGATTGCTGAAGGTTCCGGCATTGGTGAAGAAATATGTGGTGTTGATAAAGATTGTATAGTAGTACCGTCATCGCCCATATTAACTAAAATTGAACCAGACGATGTACCACATCAGGATGTCGATGATTATGTAGAAATTCAAGTAACAGAAGAAGAAGTAATTACTGACCAGTGGGATGCACAAAATAATGGTTCCGAGGAAGAACCTCTTCATTTTAGAGTGGATGGAAATCCTGAAGAAGATGTAATTGTACCTTTACCAGAGGAACAGGATGAATATTCACGTCTCCATCCATATCCATGTGATTTCTGTAGCCGTAGGTTCAGTAAGAAATCTGGTCTGACTGTTCACATGTTATCACACCAAGTGGAACGACCTCATGAATGTAATTTGTGCGGAGCTTCTTACAGTCGCAAAGCAGAACTTGTGGAACATATGAAAATCCATGCTTACGCGCCTATCAAAACTGAAGAAGAAGAAGAGGAGGAAGAAGATGAAGAGGATATAGTTGATGATTATGACCAGATATCTACAATAACACCAACCAAGGTTAAACAAAAAATAAAACGAAGAAAGAAAGAATCCCGACAAGATGGTTATTCTTCTTCAAATTATGGCGAACATTCGGATGAAAAATTGAGTAAAAGATTAAAAAGACAAAACGCTAGTTGGAGTTATTTAGATGACGATGTTAAAATGATGGTGGAAATGGCCAGACAAGCGGCTGCACCAAAGTTTCCAATTATCGATCCGAGCCGTCCATATGTTTGCCAACATTGTGGCGTAGGTTTTGCTAGAGAAAAAGCGCTTACATCTCATACAATGGTACACATAGGAGATTCTGCTTTTGAGTGTGATTATTGTCATGATATGTTTCAAACAGAGAAACAACTTGATGAGCATATATCTACCAAGCATGAAAAACATTACCTAAATATGAATAGAAGAAAGAACAATAATTATTCTGATATAAGAATGAATTTTAAACAAGAGGATGCTGATTTAGAATGTCATGTTTGTTCATTATGCAATTTAGTTTTTAGTAATTTCGATGAATTACTCAGTCACAAAGAAGATCATGATCCGGAAATTGGAATACATGCCTGTTATTTATGCAATGAGGTGTATGAACACGTCGAGGATTTGAAAATACATATGAAAGCCACCCATAGACATTCATGTTCGGTGTGTGAAAAAATATTTAAAGATGAAAAAGCTCTAAGCAGGCATTTAGCGTTGCATCCAGAAAATCGATCTTTTCCTTGTACAGTTTGCCATCGGAGATTTAACAATAGAGTTAAATTAAAAAAGCATTTAGCTACTCATGATGATCAGAAACAAGGAATTTTATGTAACGATTGTGAACAAGAATTTCCAGACGGCCAGTCTTTATTGAATCATAGACAAGTTGACCATGGTGTTAATTTGTCTAGATTGTTTCCATGCTATGAGTGTGGCAAAACTTTTAATTCAAGATCATCACAACAAATCCATATCAGAATACATACAGGTGAAAAACCGTATGGATGTAGATTCTGTTGGAAAGCTTTTGGGGATGGAGGAACACTAAGAAAACATGAACGTATACATACCGGAGAAAAACCTTATGTATGTCCTGTCTGTTCGAAAGCATTTAATCAGAGGGTAGTGTTAAGAGAACATATACGAGCACACCATTCAGGTTCAGAGGGCCGATTAAGTGAAAGTTGCTACGAGTGTGTAGTATGTGGTTCAATGTTTGGATCATCTCGGGATTTATATTTCCATCTTGTGCAGCACAGCGATGAGAATACAGCTAAACATAGGTTTCCTTCTTCACGAAAGTATAGCAATAAGAAAAGAAAGACAAATACCATAGTAACTACTTACCATCCCAATTACAATTCAAATGTTGCCGGTTCCGATGAATCATCACATGAAGGTGATCTTTATGGAAAGAAGAAAATAGAACCACAATATTGTATTCAAACTGAGCCAGAAGCGACAACAACTTCTCACCATAACGAACCGACCATTATTGCTTCCCAAATTGAAGAACCAACCATAGGTAATGGGTTTGATACATTATTAAGCAGAGCCGGCCCTAGAAGAGCTCGTATTGTACGTTCTGGGAAAAAAGGTGTGCCAAAAGGGCAGAATAAAAGATTTGGCAAAGGAAAAGCAAAAACTAGTCGCCTATTAAATAATGCTAGCTATGCTTCTAAATATGTTGTCAGTCAGCCTGATGGAGATTGTATAAATGATACTTCGCCAATATTTGAAAATGTTATTAAAACAGAAATTTCACCATCAGAACCACAAATTAACGGTAATAGTGTATCATTGCCTAAAAGTAGACCTAGAACTAAGAATGTTAGCTATCATAATATGAGAGAGGCAAGATTTGAAATTGCCACATTTCCAATAGCAAATGAGTCAAAAGGGAAAAAATCTAAAAAGGTACAAAAACATAAGGTAAAAATAGAAGAACCATCTATAGATACACAATTTGTGAATGGTATAGATACAAGTCTGTTTGATGATAACCATCATGATAGTGGTGAACAAATTGAAACCTGTATTGTTGATGATATCGATGTGGAATTAAAATTAGAAGTAAAAACAACAGATGATTTAAATATGACGCGTATTGGTGATTTGTTAATAAAAACAGAAATGGTTTCCTGTGATATGTGCAGCGAATCGTTTGTTAGTAAGTCAGAGCTTTTAAAACATATTCAGATACATATTTAG
- Protein Sequence
- MANSLVTSEENYSFNLEWIAEGSGIGEEICGVDKDCIVVPSSPILTKIEPDDVPHQDVDDYVEIQVTEEEVITDQWDAQNNGSEEEPLHFRVDGNPEEDVIVPLPEEQDEYSRLHPYPCDFCSRRFSKKSGLTVHMLSHQVERPHECNLCGASYSRKAELVEHMKIHAYAPIKTEEEEEEEEDEEDIVDDYDQISTITPTKVKQKIKRRKKESRQDGYSSSNYGEHSDEKLSKRLKRQNASWSYLDDDVKMMVEMARQAAAPKFPIIDPSRPYVCQHCGVGFAREKALTSHTMVHIGDSAFECDYCHDMFQTEKQLDEHISTKHEKHYLNMNRRKNNNYSDIRMNFKQEDADLECHVCSLCNLVFSNFDELLSHKEDHDPEIGIHACYLCNEVYEHVEDLKIHMKATHRHSCSVCEKIFKDEKALSRHLALHPENRSFPCTVCHRRFNNRVKLKKHLATHDDQKQGILCNDCEQEFPDGQSLLNHRQVDHGVNLSRLFPCYECGKTFNSRSSQQIHIRIHTGEKPYGCRFCWKAFGDGGTLRKHERIHTGEKPYVCPVCSKAFNQRVVLREHIRAHHSGSEGRLSESCYECVVCGSMFGSSRDLYFHLVQHSDENTAKHRFPSSRKYSNKKRKTNTIVTTYHPNYNSNVAGSDESSHEGDLYGKKKIEPQYCIQTEPEATTTSHHNEPTIIASQIEEPTIGNGFDTLLSRAGPRRARIVRSGKKGVPKGQNKRFGKGKAKTSRLLNNASYASKYVVSQPDGDCINDTSPIFENVIKTEISPSEPQINGNSVSLPKSRPRTKNVSYHNMREARFEIATFPIANESKGKKSKKVQKHKVKIEEPSIDTQFVNGIDTSLFDDNHHDSGEQIETCIVDDIDVELKLEVKTTDDLNMTRIGDLLIKTEMVSCDMCSESFVSKSELLKHIQIHI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01301779;
- 90% Identity
- iTF_01301779;
- 80% Identity
- -