Trub011992.1
Basic Information
- Insect
- Triatoma rubrofasciata
- Gene Symbol
- -
- Assembly
- None
- Location
- chr3:57851396-57855800[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.00031 0.019 14.9 5.9 1 23 117 139 117 140 0.96 2 18 0.00053 0.032 14.2 0.9 2 23 157 178 156 178 0.97 3 18 2.8e-06 0.00017 21.4 0.7 1 23 184 206 184 206 0.97 4 18 1.2e-05 0.00075 19.3 0.7 1 23 212 234 212 234 0.98 5 18 0.0006 0.036 14.0 0.9 1 23 241 263 241 263 0.98 6 18 0.02 1.2 9.2 3.1 1 23 269 291 269 291 0.98 7 18 1.4e-06 8.8e-05 22.3 0.3 1 23 297 319 297 319 0.96 8 18 7e-07 4.2e-05 23.3 0.3 1 23 325 347 325 347 0.98 9 18 0.0015 0.093 12.8 0.9 2 23 355 376 354 376 0.94 10 18 1.6e-05 0.00098 19.0 1.8 1 23 442 464 442 464 0.97 11 18 2.7e-05 0.0016 18.3 0.3 3 22 468 487 466 487 0.93 12 18 4.6e-06 0.00028 20.7 1.2 1 23 518 540 518 540 0.98 13 18 0.0012 0.074 13.1 0.7 1 23 546 568 546 568 0.98 14 18 6.1e-06 0.00037 20.3 0.3 1 23 574 596 574 596 0.98 15 18 0.017 1 9.4 2.8 1 23 602 625 602 625 0.93 16 18 3.8 2.3e+02 2.1 1.3 2 23 629 651 628 651 0.93 17 18 0.71 43 4.4 0.4 2 23 658 680 657 680 0.87 18 18 0.0044 0.27 11.3 0.4 1 23 761 783 761 783 0.93
Sequence Information
- Coding Sequence
- ATGCGTCGTAGTAGTGGACTGGCTTCACTCTGTTTCAGCCTCTACCTCAACATGGCGGAGATGGAGACGATTGAGGATTGTGGTTATCGGGAAGAATTTGTTTTTGTGGAGGAATATTTCCCATTGGATTTACATGAAGAGGAAGTCATTGCTGAACAAATAGAAGTAGAAGATGTGGTTCAGGAACAAAAACCAGATCCTGAAATCATTCATGCCACAAATAGCATTTTACCTGAGGGTTATGACCCTATGGATCCCACACAGTGGGCACAGGAAGAAGTTATTATTGAATCTACAGAAACTTTTGTCAAACAAGAAATTCCAGAAGTTGAAGAACAAACGCACATTTATGAGTGTTATAAATGTGCAAAAAGATTCAACTTTAAAGATAAATTATTCAGGCATATGAAATTACATCATGAAAAAGGTGATGATATAATGGTTGAAAGAGATGGAAAAAGAATTTGGACTTGTACCCAATGTGATAAAACGTTTATTTCTCGAAAGGGATCAATTATTCATCAGAGAACTCACACAGGGGAACGGCCATACTCTTGTAGCGTGTGCCAGAAACGATTTATAGACAGCAGTACACTGATGAAACATCAAGTAATCCATCAAGCTGTTAGGCCATTCAGTTGTGTGATTTGTCGGCGAGGTTTCAATCAGAAAGTTGCGCTGCAAAGACATGAGCGAACACATGGCCAATTGCAACCAACTTATAAATGTAAATTTTGTCCAAAAACGTTTCTAGTTTCACAAAGTTTACAAGCTCATGAGAAAATACATTCTGGTATCAAACCCTATACTTGCCAATATTGTCCCAGTAGGTTTCATACATCCACAGCGCAACGTCAGCACGAGCGAGTTCATACAAATGAACGTCCTTACGCCTGCAATTATTGTCCAAAAGCTTTTAAAGACAGTGGAACACTATTTAAACATCAGGTTATTCATTCTGGAATTAGGCCTTTTGTCTGTCCTATTTGTTCACAGGGATTTACACAAAAAGTGGCCTTACGGAAGCATATAAAATCGCACGTATCACGAAGTCAAGATATAACATGCGAAGTTTGTGATACACAGTTTTTCAGTAAAGAAGATTTGTGCAGTCATGTTGAAGAACATATTGAACAGCACCCGAGTTTCAGCCAGGTGAAATCAATAGCCACGTCTTCTTTAAAAAATAAACCCGATCATTTACCTCCAAAGATACAATTACCAGTCAAAGAGCCAGAACCGGAACGGACCGAAAGTGATCTCAGCGATTTAGCTACATTATGTGATGTTGCAATATCAACAGCCGGTGATTTGGCGCACACTTATCCATGTTTGCATTGTGGTATGAGTTTCCGGCGTAAAAAATCCTTGGATTCTCATCTATCTATTCATCGTATGAATTGCAAATACTGTGATCGACCGTTTCCAGATAAATCTTCACTTGAAACCCATGAAAGACGACTTTGTGCAAATTCTTCTCCACCAAGAAATATCCAAATGGAAAGAATAGAGAAGCCAATAGCTATAGCACCAAAACCTTCAAAACGCTTTTTCTATTGTGAACTCTGTGATAAAACATTTAGTTCACGTAATGGTTATATTATACATCAACGCAGTCACACCGGAGAACGGCCATATCCTTGCAGATGGTGTGACAAAGCGTTTGGCGACTCTGCTACCAGGCACAAACATGAAAGAATACATACTGGTGAAAGACCATTTAAATGTTCCAGATGCCCGAGAGCATTCAATCAGAGAGCAGCTTTAAGAGCACATCAAGTGACACACACAGTAGATAGGGCGTTTCTATGCAAATTTTGTCCATCTTCCTTTCCATATTTTGCAACGTTGAAGAGACATCAACAGGCTTGTCATAATCAGATTGTATGTCCATTGTGTAATCTATTTTTGCATGATGGTAAAAAATTACATGGCCATATAAAAGTGAAACATGTTAAAGATTCTAATCTTTCTTGTAGTCTATGTGATTCGGGTATATTTACGGATTCTGATGAATTCTGCGATCATATGGTATGGCATGGAAAACAACAGGCAAACGCAAGAGCTAAAACTCCGCCCAGAGAAAGGCCTCCTGAAGAACAGAATCATGAAATAGAATATGTTAATAATGAGGAAAATAACGAGGAAGAGGTAGAAGAGGAAATAGTTGAAGAAATGGTGGACGGCCTAGAAGTTGTAGACGGTGTTTTGATTGAACCAAAAGAAGAGATTATTGAACAAACTATTGTAACTGATGATTTTCCAATAGTTGAAGGAGCATATTCTTGCGAGGTATGTGGACTATTGTATCATGATAAAGAGCAGTTAAAGGAACACATTCCTACACATTTTTAA
- Protein Sequence
- MRRSSGLASLCFSLYLNMAEMETIEDCGYREEFVFVEEYFPLDLHEEEVIAEQIEVEDVVQEQKPDPEIIHATNSILPEGYDPMDPTQWAQEEVIIESTETFVKQEIPEVEEQTHIYECYKCAKRFNFKDKLFRHMKLHHEKGDDIMVERDGKRIWTCTQCDKTFISRKGSIIHQRTHTGERPYSCSVCQKRFIDSSTLMKHQVIHQAVRPFSCVICRRGFNQKVALQRHERTHGQLQPTYKCKFCPKTFLVSQSLQAHEKIHSGIKPYTCQYCPSRFHTSTAQRQHERVHTNERPYACNYCPKAFKDSGTLFKHQVIHSGIRPFVCPICSQGFTQKVALRKHIKSHVSRSQDITCEVCDTQFFSKEDLCSHVEEHIEQHPSFSQVKSIATSSLKNKPDHLPPKIQLPVKEPEPERTESDLSDLATLCDVAISTAGDLAHTYPCLHCGMSFRRKKSLDSHLSIHRMNCKYCDRPFPDKSSLETHERRLCANSSPPRNIQMERIEKPIAIAPKPSKRFFYCELCDKTFSSRNGYIIHQRSHTGERPYPCRWCDKAFGDSATRHKHERIHTGERPFKCSRCPRAFNQRAALRAHQVTHTVDRAFLCKFCPSSFPYFATLKRHQQACHNQIVCPLCNLFLHDGKKLHGHIKVKHVKDSNLSCSLCDSGIFTDSDEFCDHMVWHGKQQANARAKTPPRERPPEEQNHEIEYVNNEENNEEEVEEEIVEEMVDGLEVVDGVLIEPKEEIIEQTIVTDDFPIVEGAYSCEVCGLLYHDKEQLKEHIPTHF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01301771; iTF_01478943;
- 90% Identity
- iTF_01478943;
- 80% Identity
- -