Trub008854.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Triatoma rubrofasciata
Gene Symbol
-
Assembly
None
Location
chr8:3361377-3365725[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 20 0.0017 0.11 12.6 1.2 3 23 70 90 68 90 0.97
2 20 1.3e-05 0.00079 19.3 3.6 1 23 96 118 96 118 0.99
3 20 4.9e-06 0.0003 20.6 2.3 1 23 124 146 124 146 0.99
4 20 6.9e-05 0.0042 17.0 2.8 1 23 152 175 152 175 0.98
5 20 5e-06 0.00031 20.6 4.1 1 23 181 203 181 203 0.99
6 20 1.5e-05 0.00089 19.1 4.7 1 23 209 231 209 231 0.99
7 20 2.1e-05 0.0013 18.6 4.3 1 23 237 259 237 260 0.96
8 20 1e-05 0.00062 19.6 2.7 1 23 266 288 266 288 0.98
9 20 2.9e-05 0.0018 18.2 4.7 1 23 294 316 294 316 0.98
10 20 0.00053 0.032 14.2 3.2 1 23 322 344 322 344 0.99
11 20 0.00017 0.01 15.8 2.1 1 23 350 373 350 373 0.98
12 20 1.1e-06 6.4e-05 22.7 5.7 1 23 379 401 379 401 0.99
13 20 4.7e-06 0.00028 20.7 4.0 1 23 407 429 407 429 0.99
14 20 0.00036 0.022 14.7 5.2 1 23 435 458 435 458 0.98
15 20 4.9e-07 3e-05 23.7 3.3 1 23 464 486 464 486 0.99
16 20 8.5e-06 0.00052 19.8 3.7 1 23 492 514 492 514 0.98
17 20 0.0014 0.083 12.9 5.3 1 23 520 543 520 543 0.98
18 20 4.2e-06 0.00025 20.8 3.9 1 23 549 571 549 571 0.98
19 20 8.3e-06 0.0005 19.9 5.4 1 23 577 599 577 599 0.99
20 20 0.0027 0.16 12.0 3.9 1 23 605 628 605 628 0.98

Sequence Information

Coding Sequence
ATGTCGATTAAAATTGAAGAAGTTAGTGACGACAGTTCGCCCTTACCGACGACAGATTGTCACGACCCACCTGAAAATAAAAAAATCAGTTATCAAGATATGCAATTATATGAGAGAGTAATGATTAAAGAAGAATGTGTCAGTAACCTCAAGAAAGAAGAATTGGTAGTACCCCCGGCAACGTTCGATGAACAGGAACAATATGGTTGTAGTACGTGCGACGGTAGTTTTACGACTTTGGAACTACTGGAAATACACAAGTGTACACACCAATTTAAGAAGAAATATAAGTGTAATCAATGTGAGTACAGTTGTAATAATTCCTCAGGACTGAAAGTACACCTGCGTAAACATACGGGTGAGAAACCTTATAAGTGTGATGAATGTGATTACAGATGTACGGTACCACAGTCTTTGAAGTCACATATACGTACACATACGGGTGAGAAACCTTACAAGTGTGATGAATGTGATTACAGATGTACGGTATTACAGTCTTTAAAGTTACACATTCGTACACGTCATACAGGTGACAAGCCATTTAAGTGTACTGAATGTGATTACAGGTGTACTACTTCCACAGAATTGAAGATACATATCCGTAAACATACTGGCGAGAAACCATTTAAATGTAGTGAGTGTAATTACAGTTGTATTAATTCCACAAAATTGAAGGTACATATGCGTAAACATACGGGTGAGAAACCGTATAAGTGTAGGGAATGTGATTACAGTTGTTCAGTAGCAAAATCTTTGAAGATACACATTCGTACACATCATACAGGTGAGAAACCATATATGTGTAATGAATGTGATTACAAGTGTACTAATTCCTCGGCACTGAAAGTACATGAGCGAAAACATTCAGGTGATATACCATATAATTGTAGTGAATGTGATTACAGGTGTACTAGTTCCACAAAATTGAAGATACATATGCGTAAACATACGGGTGAGAAGCCATATAAGTGTAGTGAATGTGATTATAGTTGTTCAATAGCAAAAACTTTGAAATTACACAATCGTACACACACGGGCGAGAAGCCATATAAGTGTGATGAATGTGATTACAGATGTGCTGTATCGCAGTCTTTGAAGTTACACATTCGTAATCGACATACAGGTGAGAAGCCTTACAAGTGTAATGAATGTGATTACAGGTGTACTACTTCCACAGAATTGAAGAAACATATGCGTAAACATACGGGCGAGAAACCGTATAAGTGTAGTGAATGCGATTACAGTTGTATTAATTCCACAAAATTGAAGGTACACATGCGTAAACATACGGGCGAGAAACCATATAGATGTTGTGAATGTGATTACAGTTGTTCAGTAGCAAAAACTTTGAAGATGCACATTCGTACTCGACATACAGGTGAGAAACCTTATAAGTGTAATGAATGTGATTACGTGTGTACTACTTCCACAGAATTGAAGATACATATGCGTAAACATACGGGCGAGAAACCATATAACTGTAGTGAATGTGATTACAGGTGTACTACTTCCGCAAAATTGAAGGTACATATGCGTAAACATACAGGCGAGAAACCATATAGATGTTGTGAATGTGATTACAATTGTTCCGTAGCAAAAACTTTGAAGATGCACATTCGTACTCGACATACAGGTGAGAAACCATATAATTGTAATGAATGTGATTACAGGTGTACTACTTCCACAGAATTGAAGATACATATGCGTAAACATACTGGCGATAAACCATATAAGTGTAGTGAATGTGATTACAGGTGTACTACTTCCACAAAATTGAAGATACATATGCGTAAACATACAGGCGAGAAACCATATAGATGTTGTGAGTGTGATTACAATTGTTCATTAGCAATAACTTTGAAGATACACATTCGTACTCGACATACAGGTGTACTACTCCCTCGGGACTGGAAGTACATGTGCGAAAACATTCAGGTGATATACATACAAGTGAAATGA
Protein Sequence
MSIKIEEVSDDSSPLPTTDCHDPPENKKISYQDMQLYERVMIKEECVSNLKKEELVVPPATFDEQEQYGCSTCDGSFTTLELLEIHKCTHQFKKKYKCNQCEYSCNNSSGLKVHLRKHTGEKPYKCDECDYRCTVPQSLKSHIRTHTGEKPYKCDECDYRCTVLQSLKLHIRTRHTGDKPFKCTECDYRCTTSTELKIHIRKHTGEKPFKCSECNYSCINSTKLKVHMRKHTGEKPYKCRECDYSCSVAKSLKIHIRTHHTGEKPYMCNECDYKCTNSSALKVHERKHSGDIPYNCSECDYRCTSSTKLKIHMRKHTGEKPYKCSECDYSCSIAKTLKLHNRTHTGEKPYKCDECDYRCAVSQSLKLHIRNRHTGEKPYKCNECDYRCTTSTELKKHMRKHTGEKPYKCSECDYSCINSTKLKVHMRKHTGEKPYRCCECDYSCSVAKTLKMHIRTRHTGEKPYKCNECDYVCTTSTELKIHMRKHTGEKPYNCSECDYRCTTSAKLKVHMRKHTGEKPYRCCECDYNCSVAKTLKMHIRTRHTGEKPYNCNECDYRCTTSTELKIHMRKHTGDKPYKCSECDYRCTTSTKLKIHMRKHTGEKPYRCCECDYNCSLAITLKIHIRTRHTGVLLPRDWKYMCENIQVIYIQVK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-