Trub010924.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Triatoma rubrofasciata
Gene Symbol
-
Assembly
None
Location
chr10:35048117-35064192[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 17 8.4e-06 0.00051 19.9 2.6 1 23 14 36 14 36 0.99
2 17 1.2e-05 0.0007 19.4 1.9 1 23 42 64 42 64 0.99
3 17 5.2e-05 0.0031 17.4 8.1 1 23 70 92 70 92 0.99
4 17 1e-06 6.4e-05 22.7 3.4 1 23 98 120 98 120 0.99
5 17 2e-06 0.00012 21.8 2.6 1 23 126 148 126 148 0.99
6 17 2.7e-06 0.00016 21.4 2.8 1 23 154 176 154 176 0.99
7 17 9.1e-06 0.00056 19.7 0.8 1 23 182 204 182 204 0.93
8 17 2.2e-06 0.00014 21.7 1.8 1 23 210 232 210 232 0.99
9 17 2e-06 0.00012 21.8 7.0 1 23 238 260 238 260 0.99
10 17 2.7e-06 0.00016 21.4 3.8 1 23 266 288 266 288 0.99
11 17 5.4e-07 3.3e-05 23.6 2.3 1 23 301 323 301 323 0.99
12 17 1.2e-07 7e-06 25.7 3.5 1 23 329 351 329 351 0.99
13 17 0.00017 0.01 15.8 5.2 1 23 357 379 357 379 0.99
14 17 6.8e-05 0.0041 17.0 8.4 1 23 385 407 385 407 0.99
15 17 1.9e-06 0.00011 21.9 4.4 1 23 413 435 413 435 0.99
16 17 2.2e-05 0.0014 18.5 5.7 1 23 441 463 441 463 0.99
17 17 2e-06 0.00012 21.8 3.0 1 23 469 491 469 491 0.99

Sequence Information

Coding Sequence
ATGGGAGAACATGTGCAATCACATGCAGTTGAGAAGCCGTATAAATGTAGTGTTTGCGAATATACTTGTGCAAAATCTGGAAGTCTGAAAACACATATACGGACACATACAGGCGAGAAGCCGTATAAATGTAGTGAATGTGATTATAGTTGTACATCATCTGGAGTTCTGAGAGAACATGTGCGAACACATACAGGCGAGAAGCCGTATAAATGTAGTGAGTGCGATTATAGTTGTACAACATGTAGATATTTGAAACAACATCTGCGAACACATACAGGTGAGAGGCCATATAAATGTAGTGTTTGCGATTATCGTTGTGCAAAATCTGGAAATTTGAAAACACATATGCGGACACATACAGGCGAGAAGCCGTATAAATGTAGTGAATGCGATTATAGTTGTACTAGTTTTGGAGGTTTGAAAATACATATGCGAACACATACAGGCGAGAAGCCGTATAAATGTAACCAGTGTGGTTATAGTTGTGCATTATGGGGACATTTGAATTTACATATGCGGATGCACACAGGCGAGAAGCCTTATAAATGTAGTGTTTGCGATTATAGTTTTGCAAAATCCGGAACTTTGAAATCACATATGTGGACACATACAGGCGAGAAGCCGTATAAATGTAGTGAATGTGATTATAGTTGTACATCATCTGGAGGTTTGAGAGATCATGTGCGAACACATACAGGCGAGAAGCCTTATAAATGTAGTGAGTGCGGTTACAGTTGTACAACATGTAGAGATTTGAAACAACATATGCGAACGCATACAGGGGAGAAACCTTATAAATGTAGTGTTTGCAATTATAGTTGTACAAAATCTGGAAGTTTGAAAACACATATGCGGATACATACAGGACATACGCGAACACATACAGGCAAGAAGCCGTATAAATGTAGTGAGTGCGATTATAGTTGTACAGGTTCTGGTGATTTGAAAAAACATATACGAACACACACAGGCGAGAAACCGTATAAATGTAATGAGTGCGATTATAGTTGTACAAGTTCTGGAGATTTGAAAAAACATATGCGATCACATACAGGCGAGAAACCGTATAAATGTAGTGTGTGCGATTATAGTTGTATATGTTCTGGAGATTTGAAAAAACATATGCGAACACATACAGGAGAGAAGCCGTATAAATGTAGTGTGTGCGATTATAGTTGTACACATTGTGGATATTTGAAGGTCCATATGCGAAAACATACAGGCGAGAAGCCGTATAAATGTAGTGAGTGCGATTATAGTTGTTCTCAATTTGGAACTTTGAAACAACATATGAGAACACATACCGGCGAGAAGCCGTATAAATGTAGTGAGTGCGATTATAGTTGTAGAACATCTGGATGTTTGTACCAACATATGCGAATACATACAGGCGAGAGACCGTATAAGTGTAGTGAGTGTGATTATAGTTGTACAATATCTGGATCTTTAAAGAATCATATGCGGACGCATACAGGCGGAAAGCCTTAA
Protein Sequence
MGEHVQSHAVEKPYKCSVCEYTCAKSGSLKTHIRTHTGEKPYKCSECDYSCTSSGVLREHVRTHTGEKPYKCSECDYSCTTCRYLKQHLRTHTGERPYKCSVCDYRCAKSGNLKTHMRTHTGEKPYKCSECDYSCTSFGGLKIHMRTHTGEKPYKCNQCGYSCALWGHLNLHMRMHTGEKPYKCSVCDYSFAKSGTLKSHMWTHTGEKPYKCSECDYSCTSSGGLRDHVRTHTGEKPYKCSECGYSCTTCRDLKQHMRTHTGEKPYKCSVCNYSCTKSGSLKTHMRIHTGHTRTHTGKKPYKCSECDYSCTGSGDLKKHIRTHTGEKPYKCNECDYSCTSSGDLKKHMRSHTGEKPYKCSVCDYSCICSGDLKKHMRTHTGEKPYKCSVCDYSCTHCGYLKVHMRKHTGEKPYKCSECDYSCSQFGTLKQHMRTHTGEKPYKCSECDYSCRTSGCLYQHMRIHTGERPYKCSECDYSCTISGSLKNHMRTHTGGKP

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-