Trub000273.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Triatoma rubrofasciata
Gene Symbol
-
Assembly
None
Location
chr7:29681297-29683333[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 22 3.8e-05 0.0023 17.8 0.8 1 23 65 87 65 87 0.99
2 22 2.8e-05 0.0017 18.2 0.8 1 23 93 115 93 115 0.99
3 22 8e-05 0.0049 16.8 2.2 1 23 121 143 121 143 0.99
4 22 7.1e-06 0.00043 20.1 3.3 1 23 149 171 149 171 0.99
5 22 5.5e-05 0.0034 17.3 3.5 1 23 177 199 177 199 0.99
6 22 1.4e-05 0.00084 19.2 1.8 1 23 205 227 205 227 0.98
7 22 0.0018 0.11 12.6 3.4 1 23 233 255 233 255 0.99
8 22 1.1e-05 0.00066 19.5 1.4 1 23 261 283 261 283 0.98
9 22 7.2e-06 0.00044 20.1 0.3 1 23 289 311 289 311 0.99
10 22 9.9e-06 0.0006 19.6 1.3 1 23 317 339 317 339 0.99
11 22 1.8e-06 0.00011 22.0 2.9 1 23 345 367 345 367 0.99
12 22 5.2e-06 0.00032 20.5 1.8 1 23 373 395 373 395 0.99
13 22 0.00014 0.0086 16.0 0.5 1 23 401 423 401 423 0.96
14 22 5.8e-05 0.0035 17.2 0.9 1 23 429 451 429 451 0.99
15 22 6.3e-06 0.00038 20.3 4.2 1 23 457 479 457 479 0.96
16 22 0.0004 0.024 14.6 2.5 1 23 485 507 485 507 0.99
17 22 0.00066 0.04 13.9 6.4 1 23 513 535 513 535 0.99
18 22 0.00026 0.016 15.1 0.9 1 23 541 563 541 563 0.99
19 22 4.2e-08 2.6e-06 27.1 3.3 1 23 569 591 569 591 0.99
20 22 3.7e-05 0.0023 17.8 2.3 1 23 597 619 597 619 0.98
21 22 4.9e-06 0.0003 20.6 5.2 1 23 625 647 625 647 0.98
22 22 0.55 34 4.7 0.5 5 18 654 667 653 667 0.92

Sequence Information

Coding Sequence
ATGGAAGAACTCAAAGGAGCAAATCAGTCGGAAGACTACGTTAGCACTGTTAAAGAAGAAAAGGACATTAAAGAATTTAGTGATATCTACAGTCATGCAACGAGTGGTGATTGGAATTATAGCTCTGTAACCTCCCTACGTCAGAAAACATATCTACCAGAAATAAGCATGCAGGAAGGAGGCAAGAAGTTATATACATGTAGTGAATGTGGATACAGTAATACAAATTCCGCAAAATTAAAAATACATTTACGAACGCATTCGGGAGAGAAGCCATTTAAATGTAATGAATGCGATTATTCAAGTACAACATTTGGAGGTGTGAAAATACATATGAGAACACATTCAGGCGAGAAACCATTTAAATGTACTGAATGCTATTACATCTGTGCAAGTAATGGAGCCTTGAAACTTCACATGCGAAAGCATTCAGGGGAGAAGCCGTATAAATGTGGTGAATGCGATTATAGTTGTACAACTAGCGGATCTTTGAAATTACATAAACGTACACATTCAGGAGAGAAACCATATAAATGTAGTGAATGCGATTATAATTGTATAACTTTTGGATCTTTGAAATTACATATGCGAAAACATTCTGGCGAGAAGCCATATAATTGTAATGAATGCGTCTATACTTGTTCAAGTTCGGGAGCTTTGAAACTTCATATGCGAACTCATTCTGGAGAGAAGCCGTTTAGATGTAGTGAATGTGCCTTTAGATGTACGACATCAGGAGGTTTGAAACTGCATAAGCGAACGCATTCAGGCGAGAAGCCATATAAATGTGATGAATGCGATTACACTTGTACAACTTCCGGAAGTTTGAAATTACATGTACTAATACATTCAGGGCTGAAGCCGTATAAATGTAATATATGCACATATAGTGGTGTGAGACCAAACGATTTGAAATTACATATGCGAATACATATAGGAGAAAAGCCGTATAAATGTTACGAATGCCTATATAGTTCTACTAATTCCGGAGATTTGAAGAAACATATGCGAATACATTCTGGCGAGAAGCCATATAAATGTTACGAATGCAATTATACTGCTACGCGTTCCACAAATTTGAAAACACATATGCGAACACATTCAGGCGAGAAGCCATATAAATGTCATGAATGCAATTATAGTAGTGCAACATCTGGAAGCTTGAAAATACACTGGCGGACACATTCAGGCGAGAAGCCATATCTATGTAGTGAATGCGATTACAGTGGTAAAACTATCGGTTCGTTGAAATTACATATGCGAAAACATTCAGGCGAGAAACCTTATAAATGTAGAGAATGTGATTATAGTTCTTCAAGATCCGGCAGATTGAAAGAACATGTACGAATTCATTCAGGCGAAAAACCATTTTTGTGTAGTGAATGTGAATATTGCTTTACAAGATACGACAAATTAAAAGAGCATATGCGAACACATTCAGGCGAGAAACCATACAAATGTAGTGAATGTGATTACACTAGTGCAACATCTGGATGTTTGCAGTTACATTCACGAAGACATTCAGGCGAAAAGCCATTTAAATGTTGTTCTTGCGAATACAGTTGTAGAAGTTCTGGCTCTTTGACAGTACATATGCGAAAACATTCAGGCGAAAAACCATATAAATGTAGTGAATGTGGATCTACTTTTTTAACAGCCGGAAAATTTAAAGACCACATGCGGTTACATTCCGGTGAGAAGCCATATAAATGTAAAGAATGCAATTACAGTTTTAGACGATCCGGAAAATTGAAGGAACACATGCGGACCCATTCTGGTGAGAAGCCGTATAAATGTAGTGAGTGCGATTATTCTTGTGCCACATCGGGAAGTTTGAAATTACATAGGGAAAGACATTCAAATATGACGCCGCATAAATGTACTGAATGCGAGTATTGTTTTGTAACAGCTGGAAAATTGAAAAAACATATGCAAACGCATTTAAGCAAGTCAGAAACTGAATGCAACTATACTTGTAAACGTTCTGGGAATTTGAGAAGGTGTAGATTAATAGTTTCTGGTGAGAATCTTATATAA
Protein Sequence
MEELKGANQSEDYVSTVKEEKDIKEFSDIYSHATSGDWNYSSVTSLRQKTYLPEISMQEGGKKLYTCSECGYSNTNSAKLKIHLRTHSGEKPFKCNECDYSSTTFGGVKIHMRTHSGEKPFKCTECYYICASNGALKLHMRKHSGEKPYKCGECDYSCTTSGSLKLHKRTHSGEKPYKCSECDYNCITFGSLKLHMRKHSGEKPYNCNECVYTCSSSGALKLHMRTHSGEKPFRCSECAFRCTTSGGLKLHKRTHSGEKPYKCDECDYTCTTSGSLKLHVLIHSGLKPYKCNICTYSGVRPNDLKLHMRIHIGEKPYKCYECLYSSTNSGDLKKHMRIHSGEKPYKCYECNYTATRSTNLKTHMRTHSGEKPYKCHECNYSSATSGSLKIHWRTHSGEKPYLCSECDYSGKTIGSLKLHMRKHSGEKPYKCRECDYSSSRSGRLKEHVRIHSGEKPFLCSECEYCFTRYDKLKEHMRTHSGEKPYKCSECDYTSATSGCLQLHSRRHSGEKPFKCCSCEYSCRSSGSLTVHMRKHSGEKPYKCSECGSTFLTAGKFKDHMRLHSGEKPYKCKECNYSFRRSGKLKEHMRTHSGEKPYKCSECDYSCATSGSLKLHRERHSNMTPHKCTECEYCFVTAGKLKKHMQTHLSKSETECNYTCKRSGNLRRCRLIVSGENLI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-