Trub011325.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Triatoma rubrofasciata
Gene Symbol
-
Assembly
None
Location
chr10:34799950-34813477[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 19 0.002 0.12 12.4 3.4 2 20 4 22 3 25 0.93
2 19 1e-07 6.4e-06 25.9 4.9 1 23 30 52 30 52 0.99
3 19 7.9e-07 4.8e-05 23.1 4.6 1 23 58 80 58 80 0.99
4 19 2e-06 0.00012 21.8 0.7 1 23 86 108 86 108 0.99
5 19 1.9e-06 0.00012 21.9 7.3 1 23 114 136 114 136 0.99
6 19 2.8e-06 0.00017 21.4 6.1 1 23 142 164 142 164 0.99
7 19 1.1e-05 0.00066 19.5 6.0 1 23 170 192 170 192 0.99
8 19 1.3e-06 7.7e-05 22.4 5.4 1 23 198 220 198 220 0.99
9 19 1.6e-05 0.00097 19.0 2.3 1 23 226 248 226 248 0.99
10 19 8.9e-06 0.00054 19.8 2.9 1 23 261 283 261 283 0.99
11 19 3.1e-08 1.9e-06 27.5 3.8 1 23 289 311 289 311 0.99
12 19 5.8e-06 0.00035 20.4 3.7 1 23 317 339 317 339 0.99
13 19 2.4e-06 0.00015 21.6 3.7 1 23 345 367 345 367 0.99
14 19 1.7e-06 0.00011 22.0 1.5 1 23 373 395 373 395 0.97
15 19 1.5e-05 0.00088 19.1 3.2 1 23 401 423 401 423 0.99
16 19 0.00011 0.0066 16.4 2.9 1 23 429 451 429 451 0.99
17 19 1.2e-06 7.4e-05 22.5 2.7 1 23 457 479 457 479 0.99
18 19 2.7e-05 0.0017 18.2 6.2 1 23 485 507 485 507 0.99
19 19 0.00011 0.0066 16.4 2.9 1 23 513 535 513 535 0.99

Sequence Information

Coding Sequence
ATGTCGGATAAGTGTAATGTGTGCGATTATGGTTGTACAACATCTGAACACTTGAAACATCATGTGCCAATACATACAGGCGAGACGTATAAATGCAATGAGTGCGATTATAGTTGTACAAGATCTGACAATTTCAAACGACATATGCGAATACATATAGGTGAAAAGTTGTATAAATGTAGTGAGTGCGATTATAGTTGTACAAGATCTAACACTTTGAAAGAACATATGCGAACACATACAGGCGAGAAGCCGTATAAATGTAGTGTATGCGATTATAGTTCTACAATATCTGGAAATTTGAAAGAACATATGCGAACACATACAGGCGAGAAGCCGTATAAATGTAGTCAGTGCGATTATAGTTGTACAAGATCTGACCATTTCCAACGACATATGCGGGTACATACAGGCGAGAAGCCGTATAAATGTAGTGTGTGCGATTATAGTTGTACAACTTCTAGACACTTGAAAGAACATATTCGAACACATACAGGCGTGAAGCCGTATAAATGTAGTGTGTGCGATTATAGCTGTAATAGATATGAACATTTAAAAAACCATATGTTAACACATACGGGCGAGAAGCCGTATAAATGTAGTGTGTGCGATTATAGTTGTAAAACATCTGGACAGCTTAAACATCATATGCGAATACATACAGGCGAGATGTCGTATAAGTGTAGTGTGTGCGATTATGGTTGTAGTCAGTCTGGACAAATGTTAAAACATTTGCGAACACATATCGGCGAGAAGCCGTATAAATGTGGCGAGAAGCCGTATAAATGTAATGAATGCGGTTACAGTTGTACAGCATCCGGAAATTTTAAACAACATCTGCAAACACATACAGGCGAGAAGCCGTATAAATGTAATGAATGCGGTTACAGTTGTAAACAATCCGGAAATTTGAAAAGTCATATGCGTACGCATACAGGTGAGAAGCCGTATAAATGTAATGAATGCGATTATAGTTGTACTTTTTCCGGAACATTGAAAGAACATTTGCGAACACATACAGGCGAGAAGCCGTATAAATGCAATGAATGCGATTATAGTTGTACATCATCTGGAAAATTGAAACAACATGTGCGGACACATACAGGCGAAAAGCCGTATAAATGTGGTGAATGCGATTACAGTTGTACTAATTCTGGAAGTTTGAAAAAACATATGGGAATACATTCAGACGAGAAGAAGTATAAATGTAGTGAATGCGAGTATAGTTGCACACAATCTGGAACTTTGAAAATGCATATGCTTAGGCATACAGGTGAGAAACCGTATAAATGTAGTGAATGCGATTATAGTTGTAATTTTCCCGGAAGATTGAAAGAACATTTGCGAAGACATACAGGCGAGGAGCCGTATAAATGTAGTCAATGCAATTATAATTTTAAAATGTCTGGAAGTTTGTTAAAACATATGCGGACACATACAGGCGAGAAGCCGTATAAATGTAGTGAATGCGAGTATAGTTGTAGACAGACAGGACATTTGAAAAGGCATATGCTTAGGCATACAGGTGAGAAACCGTATAAATGTAGTGAATGCGATTATAGTTGTAATTTTCCCGGAAGATTGAAAGAACATTTGCGAAGACATACAGGCGAGGAGCCGTATAAATGCAATTTGGATTTTCCTGGTGGAATTGGTAAAATTAGATTTTCCTTTCCATTGCATCTACAGCAGCTTTCTAATATTGAAGAATGA
Protein Sequence
MSDKCNVCDYGCTTSEHLKHHVPIHTGETYKCNECDYSCTRSDNFKRHMRIHIGEKLYKCSECDYSCTRSNTLKEHMRTHTGEKPYKCSVCDYSSTISGNLKEHMRTHTGEKPYKCSQCDYSCTRSDHFQRHMRVHTGEKPYKCSVCDYSCTTSRHLKEHIRTHTGVKPYKCSVCDYSCNRYEHLKNHMLTHTGEKPYKCSVCDYSCKTSGQLKHHMRIHTGEMSYKCSVCDYGCSQSGQMLKHLRTHIGEKPYKCGEKPYKCNECGYSCTASGNFKQHLQTHTGEKPYKCNECGYSCKQSGNLKSHMRTHTGEKPYKCNECDYSCTFSGTLKEHLRTHTGEKPYKCNECDYSCTSSGKLKQHVRTHTGEKPYKCGECDYSCTNSGSLKKHMGIHSDEKKYKCSECEYSCTQSGTLKMHMLRHTGEKPYKCSECDYSCNFPGRLKEHLRRHTGEEPYKCSQCNYNFKMSGSLLKHMRTHTGEKPYKCSECEYSCRQTGHLKRHMLRHTGEKPYKCSECDYSCNFPGRLKEHLRRHTGEEPYKCNLDFPGGIGKIRFSFPLHLQQLSNIEE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-