Trub010838.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Triatoma rubrofasciata
Gene Symbol
-
Assembly
None
Location
chr10:34693802-34707507[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 28 8.5e-08 5.2e-06 26.1 2.3 1 23 14 36 14 36 0.99
2 28 4.1e-05 0.0025 17.7 6.7 1 23 42 64 42 64 0.99
3 28 3.3e-06 0.0002 21.1 4.0 1 23 70 92 70 92 0.99
4 28 3e-05 0.0018 18.1 1.5 1 23 98 120 98 120 0.99
5 28 1.1e-05 0.00067 19.5 2.3 1 23 126 148 126 148 0.98
6 28 0.00034 0.021 14.8 0.3 1 23 154 176 154 176 0.97
7 28 5.8e-07 3.5e-05 23.5 2.6 1 23 182 204 182 204 0.99
8 28 5.7e-06 0.00035 20.4 1.7 1 23 210 232 210 232 0.99
9 28 6e-07 3.6e-05 23.5 2.3 1 23 238 260 238 260 0.99
10 28 1.5e-05 0.00091 19.1 2.3 1 23 285 307 285 307 0.99
11 28 5.3e-06 0.00032 20.5 3.9 1 23 313 335 313 335 0.99
12 28 3.8e-07 2.3e-05 24.1 2.6 1 23 341 363 341 363 0.99
13 28 5.7e-06 0.00035 20.4 2.8 1 23 369 391 369 391 0.99
14 28 3.1e-05 0.0019 18.1 5.4 1 23 397 419 397 419 0.99
15 28 8.9e-07 5.4e-05 22.9 2.0 1 23 425 447 425 447 0.98
16 28 2.4e-06 0.00014 21.6 4.9 1 23 453 475 453 475 0.99
17 28 1.2e-06 7.3e-05 22.5 5.3 1 23 481 503 481 504 0.96
18 28 0.00069 0.042 13.8 0.9 1 23 510 532 510 532 0.96
19 28 6e-06 0.00037 20.3 0.6 1 23 538 560 538 560 0.99
20 28 5.5e-07 3.4e-05 23.6 2.5 1 23 566 588 566 588 0.99
21 28 1e-05 0.00063 19.6 2.1 1 23 594 616 594 616 0.99
22 28 4.7e-06 0.00029 20.7 3.0 1 23 622 644 622 644 0.99
23 28 9e-07 5.4e-05 22.9 1.1 1 23 650 672 650 672 0.99
24 28 6.1e-05 0.0037 17.2 6.3 1 23 678 700 678 700 0.99
25 28 6.7e-07 4.1e-05 23.3 5.4 1 23 706 728 706 728 0.99
26 28 3.4e-06 0.00021 21.1 1.9 1 23 734 756 734 756 0.98
27 28 3.1e-05 0.0019 18.1 5.5 1 23 762 784 762 784 0.99
28 28 0.44 27 5.0 3.3 1 13 790 802 790 804 0.89

Sequence Information

Coding Sequence
ATGCAAGAGCATATGGGAACACAAACAGGCGAGAAGCGGTATAAATGTGATGTGTGCGATTATAGATTTAGACATTCTGGAGATTTGAAACGACATATACGAATACATACAGGCGAGAAGCCGTATAAATGTAGTGTGTGCGATTATAGTTGTACACTATCTGGACATTTGAAGCATCATATGCGAATACATACAGGTGAGAAGCCGTATAAATGTAGTGAGTGCGATTATAGTTGTACAAGATCAGACCTTCTCAAAAGACATACGTTAACACATACAGGCGAGAAACCGTATAAATGTAGTGTATGCGATTATAGTTGTGCACAATCTGGAATTTTGAAACGACATATGCGAATACATACAGGCGAGAAGCCATATAAATGTAGTGTGTGCGATTATCGTTGTACATCATCTGCAGATTTAAAAAGACATTTGGGAACACATACAGGCGAGAAGCCGTATAAATGTATTGTGTGCGATTATAGTTCTACAATATCTGGGGATTTGAAACGACATATGCGAATACATTCAGGCGAGAAGGCGTATAAATGTAGTGAGTGCGATTATGGTTGTAGATCATCTGGAAATTTGAAAGACCATATGCGTACACATACTGGCGAGAAGCCGTATAAATGTAGTGTGTGCGATTATAATTGTGCATATTCTGGAGCTTTAAAAAAACATATGCGAATACACACAGGCGAGAAACCATATAAATGTGCAGTGTGCGATTATAGTTGTGCAACATCTGCATATTTGAAACGACATATGCGAACACATACAGGCTGCAAGCCGTATAAATGTAGCAGAAATATGCAAGAGCATATGGGAACACAAACAGGCGAGAAGCGGTATAAATGTGGTGTGTGCGATTATAGTTGTAGACATTCTGGAGATTTGAAAGGACATATACGAATACATACAGGCGAGAAGCCGTATAAGTGTAGTGTGTGCGATTATAGTTGTACAAGCTCTGGACTTTTGAAACATCATATACGAATACATACAGGTGAGAAGCCGTATAAATGTAATGAATGCGATTATGGCTGTAGATCATCTGGAAATTTGAAAGAACATATGCGAACACATACAGGCGAAAAGCCGTATAAATGTAGTGAGTGCGATTATAGTTGTGCATATTCTGGATCTTTAAAACAACATATAAGAAAACATACAGGCGAGAAGCCGTATAAGTGTAGTGTGTGCGATTACACTTGTAGACTATCGGGACTTTTGAAACATCATATGCGAACACATACAGGCGAGAAGCCGTATAAATGTAATGAATGCGATTATGTTTGTACATCGTCTGGAAATTTGAAAACACATATGGGAACCCATACAGGTGAGAAGCCGTATAAATGTAGTGTATGCGATTATAGTTGTACAAGATCTTCCCTTTTCAAACTACATATGCGAACACATACAGGCGAGAAGCCGTATAAATGTAGTGAGTGCGATTATAGTTGTACAAGATCAGACCTTCTCAAACGACATATGCAAATACATCATACAGGCGAGAAGCCTTATAAATGTGGTCTGTGCGATTATTGTGGTGCAAGATCTGCAGATTTGAAACGACATTCGGGAACACATACTGACGAGAAGCCGTATAAATGTACTGTGTGCGATTATAGTTCTACAATATCTGTGGATTTGAAACGACACATGCGAATACATTCAGACGAGAAGGCGTATAAATGTAGTGAGTGCGATTATGGTTGTAGATCATCTGGAAATTTGAAAGAACATATGCGTACACATACAGGCGAGAAGCCGTATAAATGTAGTGTGTGCGATTATAATTGTGCATATTCTGGATCTTTAAAACAACATATGCGAATACATACAGGCGAGAAACCATATAAATGTGCAGTGTGCGATTATAGTTGTACTACATCGGCATATGTGAAACGACATATGCGAACACATACAGGCTGCAAGCCGTATAAATGTAGTGTATGCGATTATAGTTGTGCACAGCTTGGAGCTTTAAAACGACATATGCGAATACATACAGGCGAGAAGCCTTATAAATGTAGGATGTGCGATTATAGTTGTGGACAGCATGGAAGTTTGAAAAAGCATATGCGAACTCATACAGGCGAGAAGCCGTATAAATGTAGTGAGTGCGATTATAGTTGTACAAGATCTGACCTTTTCAAACGACATATGCGAACACATACAGACGAGAATCCGTATAAATGTAATGAATGCGATTATGTTTGTACGTCGTCTGGAAATGTGAAAAGACATATGGGAACTCATACAGGCGAGAAGCCGTATAAATGTAGTGAGTGCTATTATAGTTGTACAAGATCTGACCTTTTCAAACGACATATGCTAACACATACAGACGAGAATCCGTATAAATGTAAAGAATGCGATTATGTTTGTACGTCGTCCAACTCAGATAAAATGGCTAGTTATCTGCCAAGATTCAATATTAGTCAAACTGCAACTTGTCCATGTGATTCATCTTCAGTTCAGTCTGTTGATCACCTTTTATGGGAATGTGAATGTTTGCAATCAGCAGGTGGTGACGCAGGGCGAGAATTGGCCCCGTAA
Protein Sequence
MQEHMGTQTGEKRYKCDVCDYRFRHSGDLKRHIRIHTGEKPYKCSVCDYSCTLSGHLKHHMRIHTGEKPYKCSECDYSCTRSDLLKRHTLTHTGEKPYKCSVCDYSCAQSGILKRHMRIHTGEKPYKCSVCDYRCTSSADLKRHLGTHTGEKPYKCIVCDYSSTISGDLKRHMRIHSGEKAYKCSECDYGCRSSGNLKDHMRTHTGEKPYKCSVCDYNCAYSGALKKHMRIHTGEKPYKCAVCDYSCATSAYLKRHMRTHTGCKPYKCSRNMQEHMGTQTGEKRYKCGVCDYSCRHSGDLKGHIRIHTGEKPYKCSVCDYSCTSSGLLKHHIRIHTGEKPYKCNECDYGCRSSGNLKEHMRTHTGEKPYKCSECDYSCAYSGSLKQHIRKHTGEKPYKCSVCDYTCRLSGLLKHHMRTHTGEKPYKCNECDYVCTSSGNLKTHMGTHTGEKPYKCSVCDYSCTRSSLFKLHMRTHTGEKPYKCSECDYSCTRSDLLKRHMQIHHTGEKPYKCGLCDYCGARSADLKRHSGTHTDEKPYKCTVCDYSSTISVDLKRHMRIHSDEKAYKCSECDYGCRSSGNLKEHMRTHTGEKPYKCSVCDYNCAYSGSLKQHMRIHTGEKPYKCAVCDYSCTTSAYVKRHMRTHTGCKPYKCSVCDYSCAQLGALKRHMRIHTGEKPYKCRMCDYSCGQHGSLKKHMRTHTGEKPYKCSECDYSCTRSDLFKRHMRTHTDENPYKCNECDYVCTSSGNVKRHMGTHTGEKPYKCSECYYSCTRSDLFKRHMLTHTDENPYKCKECDYVCTSSNSDKMASYLPRFNISQTATCPCDSSSVQSVDHLLWECECLQSAGGDAGRELAP

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-