Basic Information

Gene Symbol
ncor1
Assembly
None
Location
chr1:529348-792502[-]

Transcription Factor Domain

TF Family
MYB
Domain
Myb_DNA-binding domain
PFAM
PF00249
TF Group
Helix-turn-helix
Description
This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 3 2.2e-09 1.8e-06 27.5 0.0 3 43 487 527 486 529 0.97
2 3 3.1e-14 2.5e-11 43.0 0.0 3 45 918 961 917 962 0.97
3 3 0.56 4.4e+02 0.6 0.1 25 44 1846 1864 1845 1865 0.82

Sequence Information

Coding Sequence
ATGGAAGCAGTTGTACATTACGACCGGCCGGCCACTATGCCTTCCCAATCGCAGATGTCTTACTCAAGATCCCCTGGCATTCTTAGAAATCAAGGACAAGCAACAGAAATCTGTTACAAATCTAGCTCAGGTGGAGGAACTAACCGTGGAAACAATTCTGGAAGTGGAGTTGGTGTGGTGGGTGGTGGACACTCACCAGTAGCGTACGCAGCGGCCCAACAAAACCCAAATTCAACTTATTCCCAGATGAGATATTTACATCCTGCTTCATATCCAGCACCGCCGCCTGCTTACAGGGACAATCCTTATACATCAGTTAGGACTCCAAATATTGTAAACGAGAGAGGAGGGCAAAATGTAGACTTCATGAGGGAACCAGTTAGCAACCAGTCGAAGCCTAGAATTTCATTACTTCCATCACCTGAGTACCTTACATCGCTCTCCAGGAATAGATTACACCAGAATGATGGGTATCGAGAATCTACAATGGCTACCCAACAAGGGGCACCCGTGGATCTGAATACGCCTATCAAAAAAATTCGTTTAGGTGAACCAAAAACAGAATTACAGCGTACGCTTAGAATCGATACAAGGCAACAGGATGAAGGCCAACCTGCAGTATATAACCCACAAGTTGAAGCCATATCACCAACATTACCCACAGATGCAGCTGCATTGCAAGAAGATGCAAATTTTCGATCAACTAAAGATGATTTATTACATGGGATATCAAAGGTTGATCGAGAAATTACTAAGACTGAATTGCAAATATCAAAACTTAAAAAGAAACAGCAAGAATTAGAGCAAGCTGCTAAAAAACCAGCCATTAAGCAAGAAGTCGAAGAAATTCCTCAACCAAAACATCATAGTCCTGCGCAGAAGATATACGCAGAAAATAGGAGAAAAGCCCATGAAGCTCATTCGTTATTGAAAAATTTGGGTCCTAAAATTGATTTGCCATTGTACAATCAACCTTCTGATACAGTTATTTACCACGATAACAAAAGAAGACATGCAATGTTCAAGAAGAAACTGTTGAACCATCTTATGAAGAAGCAGTCAGAAAGGGAACTAAGAGAGAAACATCTAACCACATCGTATTCAGAACTTGTGAAGGAATGGTTGCGTAAGGTGGATAAGATTGAAAACTCCGCAAAAAGAAAATTAAAAGAAGCAAAAAATCGTGAATTTTTTGAAAAAATCTTTCCAAAATTAAGAAAACAACGGGAGGATCGTGAAAGATTTAATCGTGTCGGCGCCCGGGTTAAAAGTGACGCAGACTTGGAAGAAATTATGGACGGACTGCAAGAGCAAGAGATGGAGGACAAGAAAATGCGTTCATATGCAGTGGTTCCGCCATTATTGCTTGATGCTAGACAGAGAAGTGTCTTCTACATAAACAATAATGGGAAATTAGATGACTTTGCTGCTGATTATAAGGAGAGGCAATTACTGAATGTATGGACACAAGCGGAAAAGGAAATTTTCAAAGAGAAGTTTCTGCAGCATCCAAAAAACTTTTCAGTAATTGCATCATATTTAGAAAGGAAAAGTGTCAGCGATTGTGTACAGTATTATTACCTCAGTAAAAAAACTGAAAACTATAAAAGATTGTTGCGTAAATCTCGCCAGAGAACAAGATCTGGCCGAGGACCACAGGCTAAAGTTGGTGCCGGCAATTCAGCTTCTTCATCATCTGTGGCTGTTACGACAAACAGCGTAGATAGCATATTAGCTCAGAGTGCCGGTGTAACTACACGTTTACAAAGAGAACAATTACAAAAACAAGAACCACCAGCGCCTATACCACCAGTACAAGACAATAATCGTGAACCAAGCGGCGATTCCTCATATTTAATTGAACAGAATCAACAGCAACAGCAACAACAAAATCAACAACCGCAGCAACAGCCAGCACCAGCACCGCCAGTGGCCTGTGCATCACCAAATGTAGCTTCACCACCACCACCACCACCGTCCTCCGCCAAACTACCACTTCCGCCACTTTTATTCCCTAATAATGACGCTCATCCGCATGAGAAGAATGCGGAAGATAGAAAAGAAGTGAAACGTGACAAAGAAGATGTAGAGACTACTGATGACGATAATTTTGATGCGCTTGCTTCACCTGATCCAGGATTGTTTCACTTGCTTCGGTTAATAGTTCACTGCGAGATACAGCCACGAAAAGACAATGTCATTATGCGCCTATGCAATACCGGTTGTGGTGATTCAGAGAATGTTGTGGGAGTTGCATGTGCAGTGTGCAAATCAGAATCCACATGTTCTCGTGCGCTGCCAAGGTCACAAGCAAGTCAGTATGGTTTGAAGGAGGAAGAGATTGGCGCTGACGCAAGAGTGTGCAATTTATGTCGTTGCAAAGCAATTAGATCAAGATTTACTAATTGCCCAATACCTACATGTCCGAATGCAAGAGGGCATCGTGTAAAACGGCTACGTCAGCTACCATCCAAATGGATTGACTTGCCCTCCCATCTTCGAGATCCAATAGCAATGGAATTTCAAATCGATAGAAACATAACAAAATGCTGTTCAGCATGCTATAATCGGTTGATGCGACGGATAACAGTCATTGGTGAAAGTGAACCGAGCACTCAAGCTACAGTAACATCGACTAATGTAACAACTACCACTACGGTGACCACAGAAAGTGTAACCGCTTCAACCAATATTAGTATATCTGGCCGGCCAATAGCCAATAATGCTCATAGTCCATTGTCAACACTTGAATCATGGACTGATGACGAAGTGGCTAGTTTAAGGAAAGCACTAAAAGTGCACGGCACAAGATGGTCGGATATTGCGCAAATGATTGGTACCGCCAAAACTCCACATCAGTGTATGAATTTCTATTACACATACAATAAAAAATTGGGCCTCGATCAAATTATACAAAAAATTAAGCAAGGAGGCTTTCAGGACAGAAAGCCAATGCTGTCCGACGAGGAAGAATCAGGGTCCACCACCTCCAGTTGTGATGAAACAGAGACAGGAGTTGTAGGTGCCGACAGTGATACAACTAGCGCACCTTCTCCTACGCAGCATGCAACTGGCTTGGGCACCATACTACAGAATGATGAACAGGTTCGAGTTTTGCCTGGAATGACACCGCCGCCAAAATTAACAGAAGAAGGTCGGGATGTTATGCTGGACTCGCAAGATCATTCACCTGTATGTAAAGCTCCCACACCTTCTATGCCACCTTTGTTGCATGCCAAGGAGGATTATGATAGTTCAGCTACGGAGACTGCTGATGAAGGTCAAGGGGGTGGCGAAGGTGACCGGGATGGCGGACTGACTCACGTCAACCAAGCACCTCCTTCTTCACCCGGCCCAGCCGCCAAACGCGTTAAAGACCTCATGCTTGAGGTTATAGAAATGCAATTAAAGAAGGATCAAGGTCCTGGCGGTACTAGTGGTGGAGCTGGTCAAACAGCAGGAGGTGTGGCTCCTACAATAACCTCCATTTTGAAATCTGAACATGGTCTGTTCAGAGATCGTGGTGATAACAAGTCGAGACAAGATTCCAATCTGGCCACAGTGTCTGTCGTTAGTAGTCATCACTCCCATCAAACGCATGATTTCAGCCCGCCTAAGGATGGTTTAGTAGTTGTTCAGGTTGGCCAAGGAACTAGAGAACCAGATGGTGTTACACTCGATCTAAGCATAAAGAAGCCAAGAGAAAATTTAACAGCTGTAGCCAAGACAAATTTGCAACAATCACATCAGCTCTCTACAGCAACTGTTCACAACTCATTCAGAACAAATCAGCAAACACCTGAGCAATCATTCTTTCATCAGCAGGTCTTACCATCACCATTAGCATCAAAACTCTCACCAGGTGTTATAAATACTACAAATTGCACACCTGTTTCCAAACCAGTGCAACAGAGCGGTTCAATAATACATGGCACGCCTGTGTCGTCGCCAAATATTTACAGCCAGGCACGCTACGACCCACCAGCTTTACATCATACATCACCCCACAAGGAAACTGGCTCAATAACGCAAGGTACACCGGTACATCAGCGCAATACATTGTACACTAACTCAGAGTACTACAATAAGAGAAGCGGCAGCCATACTCCAGCAGGTGCTTTCTATCCACCGACACGTCCTCAAGCTTATAGCGTTGAACAACGGCAGATTATAATGAATGATTATATAACATCACAACAGATGCATGGTGGCAGTGGAAGCGGTGGAAATCAAAGGACCAGTGGTCGGACCAGCAGTTCCAGCGGAGGCAGTAGTCATTCAGATAAAGTCTTTTCAGCGTATAGTGGCGGCCGTCAGGGTGTTATCCAGAGGCATACCGCTCAGAGGCCACCTAGCCCTGTTACACAAGTGTCTGGGTCAGTGATTAGAATATACCCACCAGGACACGAAGCGTTCTCGTCACTTGTTGACGTGGCTGTTAGACAACCTAGTCTGCCTGTGCCGCCACAAGTGTCCATACAAGAGGACAAGCGGAGAATACATGAAGGACTTGGAGATCGCTTCCCTCGGGACACTGCTCATGACAGAATTCTACACGAAGGCCATCATTCAATGGAACAAAGGATGATACCTGCTGCTAGTTTTCGAGAACAACCCGTTACAATGCACCAACAACCGCACACCATACGACATACTGGGCCAGATCAGTGCGGTGAATCTGTTGGGCGAGGTTGTGTAAGGGGAAGTGAAAGTTCTACTCTAACAGCGGCAAGTCTGATAGACGCCATAATTACCCATCAGATCAACCAAAGCTCTGAGAGTCAAACAAGTAACGTACAATCTGGCATGGCCAGCAGTACACCACAAGCTCAGACAAGGCCTGGCGATCGGCTCTTTCAGGGTTTTCATCGTGAGTGTACGGAATCAAATGGTAAATTATCGCCAATAAAACTGAGTAAAAACATTGAAAGTAAAGTGAGCCATGCGTCGCAAGGAGGCGGTCCGCCGGTCTTATCGCAGGATCACGTTGATGTGTTCACTTCGAGAGCGTTGTACCAAGGATACGACCAAGGACAGACTTGGAAGTTGCGGAGAGCTTTACAAACAAAAGAAGAGTATGAGTCGCCGGTACCTTTATGTGATTACGTGAAAAATAGGATCGCAGAGGTAATGAGAACTTCGGAGGAAGATAACAGTGGCAATGGTGGCACAAAACCAGTGGAAAATGAAAGCAGTCCTGGGAGCGGACATCACGGCGGCCAGCCAGACGAAAACGTGCAAACGGGCATGCAGCCGGCACAAAGTTTCCTGCCACCGCCCACACACTACGCCTACCCGTACTCAGCGCTGTCACTGGGCGCCACCGGCCCGCCGCCGCCACAGACGCAGCAGCAGACGGCGATCGGCGAATCTACTAAGCAGAAGCTCGCCGCGCACACCAAGCTGCCGATATTTTTCCAACTAAGCTGGACTTTGATCACCTCTGAAAACCCTCATGGACGGCCAAGTTCCAGCCCCTCAGCTTCCAGGGTTACAAATCTGCAAGATGAAGGCTCTGACCTTATTCGGGATTTTAAGATTGGTGTTCACCTCAAGAGAGATGAGAGCGAAGTGAAGCAAAGATGGAGGAGGATGGATGATAAGGTGTGTAGTGAACAACAGGCCAAACCTGGCGTCATTTATAACCTTTTCGCGCGTGAATTGGACCGCGAAACGCGTATGCAATTCGAGAGGGCGCATACAACCATCGCGTTACGCCATTCGCGCCAAGCCGTCTGCTTCCCCCGCACAGTTTACCACCGCGTCTCTCAATCCAACAAACCCAAGGAGGGACCTTACACATGTGAATATTGCCGGTCTGACACGCTTCTTCGCATCGTCGAGACTGCGAATCTCACACTAAAGAGCGTGAAGAGCTCAGAACCCGCATTTCGTCATCGCCTGCTATCGTCGCCCCGGGCACCGTCGTCATCGTTCACCAAGACGACGTACCCCGCGTCGATGGCGCATTACCTCCTGCATGCTGGCCGCGATTCCATCAACCGCTACAGCAGGTACTAA
Protein Sequence
MEAVVHYDRPATMPSQSQMSYSRSPGILRNQGQATEICYKSSSGGGTNRGNNSGSGVGVVGGGHSPVAYAAAQQNPNSTYSQMRYLHPASYPAPPPAYRDNPYTSVRTPNIVNERGGQNVDFMREPVSNQSKPRISLLPSPEYLTSLSRNRLHQNDGYRESTMATQQGAPVDLNTPIKKIRLGEPKTELQRTLRIDTRQQDEGQPAVYNPQVEAISPTLPTDAAALQEDANFRSTKDDLLHGISKVDREITKTELQISKLKKKQQELEQAAKKPAIKQEVEEIPQPKHHSPAQKIYAENRRKAHEAHSLLKNLGPKIDLPLYNQPSDTVIYHDNKRRHAMFKKKLLNHLMKKQSERELREKHLTTSYSELVKEWLRKVDKIENSAKRKLKEAKNREFFEKIFPKLRKQREDRERFNRVGARVKSDADLEEIMDGLQEQEMEDKKMRSYAVVPPLLLDARQRSVFYINNNGKLDDFAADYKERQLLNVWTQAEKEIFKEKFLQHPKNFSVIASYLERKSVSDCVQYYYLSKKTENYKRLLRKSRQRTRSGRGPQAKVGAGNSASSSSVAVTTNSVDSILAQSAGVTTRLQREQLQKQEPPAPIPPVQDNNREPSGDSSYLIEQNQQQQQQQNQQPQQQPAPAPPVACASPNVASPPPPPPSSAKLPLPPLLFPNNDAHPHEKNAEDRKEVKRDKEDVETTDDDNFDALASPDPGLFHLLRLIVHCEIQPRKDNVIMRLCNTGCGDSENVVGVACAVCKSESTCSRALPRSQASQYGLKEEEIGADARVCNLCRCKAIRSRFTNCPIPTCPNARGHRVKRLRQLPSKWIDLPSHLRDPIAMEFQIDRNITKCCSACYNRLMRRITVIGESEPSTQATVTSTNVTTTTTVTTESVTASTNISISGRPIANNAHSPLSTLESWTDDEVASLRKALKVHGTRWSDIAQMIGTAKTPHQCMNFYYTYNKKLGLDQIIQKIKQGGFQDRKPMLSDEEESGSTTSSCDETETGVVGADSDTTSAPSPTQHATGLGTILQNDEQVRVLPGMTPPPKLTEEGRDVMLDSQDHSPVCKAPTPSMPPLLHAKEDYDSSATETADEGQGGGEGDRDGGLTHVNQAPPSSPGPAAKRVKDLMLEVIEMQLKKDQGPGGTSGGAGQTAGGVAPTITSILKSEHGLFRDRGDNKSRQDSNLATVSVVSSHHSHQTHDFSPPKDGLVVVQVGQGTREPDGVTLDLSIKKPRENLTAVAKTNLQQSHQLSTATVHNSFRTNQQTPEQSFFHQQVLPSPLASKLSPGVINTTNCTPVSKPVQQSGSIIHGTPVSSPNIYSQARYDPPALHHTSPHKETGSITQGTPVHQRNTLYTNSEYYNKRSGSHTPAGAFYPPTRPQAYSVEQRQIIMNDYITSQQMHGGSGSGGNQRTSGRTSSSSGGSSHSDKVFSAYSGGRQGVIQRHTAQRPPSPVTQVSGSVIRIYPPGHEAFSSLVDVAVRQPSLPVPPQVSIQEDKRRIHEGLGDRFPRDTAHDRILHEGHHSMEQRMIPAASFREQPVTMHQQPHTIRHTGPDQCGESVGRGCVRGSESSTLTAASLIDAIITHQINQSSESQTSNVQSGMASSTPQAQTRPGDRLFQGFHRECTESNGKLSPIKLSKNIESKVSHASQGGGPPVLSQDHVDVFTSRALYQGYDQGQTWKLRRALQTKEEYESPVPLCDYVKNRIAEVMRTSEEDNSGNGGTKPVENESSPGSGHHGGQPDENVQTGMQPAQSFLPPPTHYAYPYSALSLGATGPPPPQTQQQTAIGESTKQKLAAHTKLPIFFQLSWTLITSENPHGRPSSSPSASRVTNLQDEGSDLIRDFKIGVHLKRDESEVKQRWRRMDDKVCSEQQAKPGVIYNLFARELDRETRMQFERAHTTIALRHSRQAVCFPRTVYHRVSQSNKPKEGPYTCEYCRSDTLLRIVETANLTLKSVKSSEPAFRHRLLSSPRAPSSSFTKTTYPASMAHYLLHAGRDSINRYSRY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01479368;
90% Identity
iTF_01479368;
80% Identity
-