Basic Information

Gene Symbol
ct
Assembly
None
Location
chr12:5131335-5168577[-]

Transcription Factor Domain

TF Family
CUT
Domain
Homeobox|CUT
PFAM
PF02376
TF Group
Helix-turn-helix
Description
The CUT domain is a DNA-binding motif which can bind independently or in cooperation with the homeodomain, often found downstream of the CUT domain. Multiple copies of the CUT domain can exist in one protein (eg Swiss:P10180).
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 3 1.3e-27 8.3e-24 82.9 0.0 3 72 322 392 320 397 0.95
2 3 2.1e-31 1.3e-27 95.1 0.1 3 77 798 873 796 875 0.96
3 3 1.5e-31 9.3e-28 95.6 0.1 3 76 1018 1092 1016 1095 0.96

Sequence Information

Coding Sequence
ATGGGGCCCACATGCATCTGTGCATTTCAAAATGCCATTACCACAGCAGTGGCACATAATAAATCTAATAATTCCTCAGCACTGGGGAAATTCACGCGACTTTATCACATTGCGATTTCCCAACTTTTAGAAGACGTACAAAGACTACAAAATAGTATAGGAAAATTACAAGAAAATTCTGCCAATCAAATTGCTAGGCTTGAAGAAGAGCTGGAGCACAAGCGACAACACATTTGTAGGTTGGAAGCTCGTCTGGAAGCCCAAAAAGATTATAACGAACTCAAGAGGCAAGTTAGTAGTCTAAGAGGAGAAGAAATGTGTAAACAGGAGGAACCTGAAAAGTGCCCTTCGGAACTTGCTAAACCTCCATCGTCGTTAACGCCGTCTGATTTACAGAGCAAAGTGAAATCTGAAGAACCAAGAGAAAGGGATGGCGATAAAGGTTCTCCAGCAGGAGACTTACCATTAGTGAACGGTACTTCCAGTCCAACAAGCCACGAGCAAGAACAACAGCCAAGTAATAATAACAGTAGCAGAGAGAATAACAAGAGCAGTAACAATAGCAATCCAACAAGCAACAATAATAGCAGCAATACTCCCACCACAAACAACACCAGCAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAGCAACAGTAATAACAATAATAATAGCAATACCACAAATAACAATAATCCTCTACTAGCTAATGGCATGTGTGGTAATATGAATGTAGGATTAAACAACAACGTCCTACCATCTGGTGGTCCGCTCAATCTGAACGATGTTATAAAAAGTCCCTTTAGATTTGATGACAGATCACCATTTAGGTTAGAAGATCCTGGATGTATGGTTGGAAGATTTGGAGAATCGTTGATACCAAAAGGAGACCCAATGGAGGCCAGACTCCAGGAAATGCTTAGGTATAATATGGATAAATATGCCAACCAAAATCTAGATACACTTAGTATAGCCAGACGCGTGCGAGAACTCTTGTCTATACATAACGTTGGTCAGAGGCTTTTTGCAAAATACGTACTCGGATTATCACAAGGTACTGTCTCTGAACTGTTGTCCAAACCGAAACCTTGGGATAAATTGACTGAAAAAGGTCGGGATTCTTATAGAAAGATGCATGCATGGGCTTGCGACGAGAATGCAGTGCTGCTTCTTAAATCCCTCATCCCAAAAAAAGATGAAGCTTGTTCAATTATCTCTTCCCAGTTGAAACTCCTCACTGGTGTGCTAGGTAAAGATAGCGGTGGAGGTGTTAGCGTGCTCGCTGGACGTGGTGCCGAAGCAGAAATGACTGAGGAGAGGATAGCGCATATCCTGAGCGAAGCCAGTCATATGATGAAACCGCAGCAACCTGAGGACACTCATAGTAATGACGATTCAAAATCACCAAATCATCCTCAGTTTTTATTTTTCCAGAGCTCTGAATCACCTCTTGGGCGAGATAATTCTCAAAATCGCCGGTTGAAAAAATATGAAAACGATGACATATCCCAGGAACAGGTAGTAAGAATATATCAGGAAGAATTGGCGAAGTTAATGGGCCGGCGGCTAGAAGACCAACCATTTCCAGGGTATCTGAAATTAGTGTTTCCTCATTTTCTGAGTAGCGGTGGTTCGGGTGAAGATGTAAGAATAGCAATGGATGCTTACCAAAGAGAGCTAGCAAAATTGAATGCTGGTCCTCCAGGTGGTCCGTTACATCATCCGCTTGCAGCATTACATGCACAAAATGATAAGAAAGAGGATCAACGGCATAGCGGAAGTGGCAGCGCGTTTTCGCTTGTCAGACCCAAAATGGAACCAGGTTGTTCATACGGGGATAAGAATACTCACACACTCCTTGAGATGGAGAAACCATCTTTTAAACAAAATGTGAGATTCAGCACATGCTTCAGTCTCCTACTCTGCCACCAGACAAATGTTCTCATTCTGTGGCAAATCAAACCATTCACACAGTTGCCACAGTGTTTCCTTTACCAACTCAACAATATTATAGACTTTCCAGTTTGGCTAAGTGATGCACAATTAGCAATTGAACAATATGTTTTTCACACTATAATGTATCTATCGTCTTGCAAATCCCGCATAATTCTATACACGCTTCAAATGTTAAAAATCTCACGACTTTCTTTCGAGTTATCAATTAACACAGCAAGTTCGCCTCTTGGTAATGTTATCCTACCACCGGAAGATGTAGGCAACGGATCGGGAGCTGCAGCCGTTAGCCCACTTCAGAGGATGGCATCTATTACAAATGCTCTCATTTCGCAACCACCGTCGCAACACCACCATTCACCATCTCAACGACCACTGAAAGCCGTTCTTCCACCAATCACTCAACAACAATTCGATCAATTCAATAATCTAAACACAGAAGAGATTGTTCGTAAGGTCAAAGAACAGTTGAGTCAATTTTCTATCAGTCAAAGGCTTTTTGGCGAATCAGTATTAGGTTTATCACAGGGGAGCGTATCAGACTTGTTGGCGCGTCCTAAGCCTTGGCATATGCTCACACAAAAAGGTCGAGAACCGTTTATTAGAATGAAAATGTTTCTAGAAGATGAAAATGCTGTGCATAAATTGGTCGCATCTCAATATAAGATTGCGCCGGAAAAGCTGATGAGGACTGGCGGATATGGTATTAATCCTAATCGCTTAGCGATCATAAGCCTTTGTGGTCACTTTCATCAGCCGAAAGTCATGGCCCTTGTTGCGTCAGGCGTTAAAATATCGCAGGCGGTAAAATCAGAATTCCACCAATTCCTAGAAACGGTTCTCTTACTTTCATATTTACATAATTCTGGTCTGCACATGACACAACAACATACACCGGCACCTCCTCCAGTTTCACCACTCACACCACCAGATGTAAAAAAGTGTATATTGCCTCCACAACAAGGTAGCCAAAGTTCGGCCTGTCATACGCCAGTCGGCATCCAACAGTATTCTGGCCCCCCAGCAGCTTTAAAAAATCTTCCACAGGTATCACCATCGGTTTATGAAATGGCCGCCTTAACACAAGATCTGGATACACAATCGATTACCACTAAAATCAAGGAGGCCCTGCTTGCCAACAATATCGGACAGAAGATATTCGGTGAGGCAGTGTTGGGCCTTTCTCAGGGCTCTGTGAGTGAGCTACTGTCTAAACCAAAGCCATGGCATATGCTCAGCATCAAGGGTCGTGAACCGTTCATTAGGATGCAGTTGTGGCTGTCTGACTCGAACAACATAGACAAACTCCAGGCCATCAAAACAGAAAGGAGAGAGCTCAATAAGGTACTCAATCATTTCTTTGCGCGGCGGCGTGGTTCTGGCCAGCAAGATAATAGTAGCGATACATCGTCTAATGATACTTCAGAATTCTATCACAGTGGAGGGGGTGCAGGTAGTCCTCCATCGGCAAAAAAGCACAGAGTCTTCTTTTCGGAGGAACAAAAAGAAGCACTAAGGTTGGCATTCGCTTTAGATCCTTACCCAAGCCTGGCAACAATTGAATTCCTCGCGAACGAACTCAGCCTTGTTTCTAGGACTATCACTAATTGGTTCCATAATCATAGAATGAGGCTGAAGCAGAGCCCTCAAGGAGACCAAGCTGGTTCTGAGGATTCATTTTCTGGTATGACTGAATCGTCAAGCCGTGTAAATCCTGAACCTAGGGCGTCGCGTCAGGATTTTGATCGAGAAGAAGAACGAGTTGTTTTGGTAAAAAGAGATTTTGAACTCACAAAAGATCGAGTCGGTTGTGCTAACAATGAAATAGACTGTGTAATCGTTAAGTTGCTCTTCTGTGTCCGTCCGCTGCCTTTCCCCCCAAAAAATAATGAAAATACATATAGAATATTGAATGAAAAAAAAACACTTGAGTTACCGCGGATTGAGACCGCGTCAGTCAGTGGTTTGCTAGAAGCTCTAAAAAACCGCCTCAGTGTACATGATATATATATATCTGATGGACTTGCAGCTTTGCGCAGCACCCAACCACAACAGATACCTTCAGATTATTTACATTTTTGTACAGCTATATATACTGGCAAATGTGATAGGACTCGTGACGACTGTCCAATGTGGTTGGCAAGAAAAGAAGAAGAAATCAAGCTCAACCGAAACGTTATGTGTAATAAACTGGAAAGTATCCAAAAAATAAAATATTTATTTACACCTTCCTATGAATGGAATTATTTCCTGGTTGAAAATTATGACGTTTATTTTGTATTTGTGGTCACAGTATCCGGTGCTAGCAAAACTGGAAGGTGCACAGTAGATTACCAACCAAAGTCTGTTTTGAAAACCAACGCTGACAAATGA
Protein Sequence
MGPTCICAFQNAITTAVAHNKSNNSSALGKFTRLYHIAISQLLEDVQRLQNSIGKLQENSANQIARLEEELEHKRQHICRLEARLEAQKDYNELKRQVSSLRGEEMCKQEEPEKCPSELAKPPSSLTPSDLQSKVKSEEPRERDGDKGSPAGDLPLVNGTSSPTSHEQEQQPSNNNSSRENNKSSNNSNPTSNNNSSNTPTTNNTSNNNNNNNNNNNNNNNSNSNNNNNSNTTNNNNPLLANGMCGNMNVGLNNNVLPSGGPLNLNDVIKSPFRFDDRSPFRLEDPGCMVGRFGESLIPKGDPMEARLQEMLRYNMDKYANQNLDTLSIARRVRELLSIHNVGQRLFAKYVLGLSQGTVSELLSKPKPWDKLTEKGRDSYRKMHAWACDENAVLLLKSLIPKKDEACSIISSQLKLLTGVLGKDSGGGVSVLAGRGAEAEMTEERIAHILSEASHMMKPQQPEDTHSNDDSKSPNHPQFLFFQSSESPLGRDNSQNRRLKKYENDDISQEQVVRIYQEELAKLMGRRLEDQPFPGYLKLVFPHFLSSGGSGEDVRIAMDAYQRELAKLNAGPPGGPLHHPLAALHAQNDKKEDQRHSGSGSAFSLVRPKMEPGCSYGDKNTHTLLEMEKPSFKQNVRFSTCFSLLLCHQTNVLILWQIKPFTQLPQCFLYQLNNIIDFPVWLSDAQLAIEQYVFHTIMYLSSCKSRIILYTLQMLKISRLSFELSINTASSPLGNVILPPEDVGNGSGAAAVSPLQRMASITNALISQPPSQHHHSPSQRPLKAVLPPITQQQFDQFNNLNTEEIVRKVKEQLSQFSISQRLFGESVLGLSQGSVSDLLARPKPWHMLTQKGREPFIRMKMFLEDENAVHKLVASQYKIAPEKLMRTGGYGINPNRLAIISLCGHFHQPKVMALVASGVKISQAVKSEFHQFLETVLLLSYLHNSGLHMTQQHTPAPPPVSPLTPPDVKKCILPPQQGSQSSACHTPVGIQQYSGPPAALKNLPQVSPSVYEMAALTQDLDTQSITTKIKEALLANNIGQKIFGEAVLGLSQGSVSELLSKPKPWHMLSIKGREPFIRMQLWLSDSNNIDKLQAIKTERRELNKVLNHFFARRRGSGQQDNSSDTSSNDTSEFYHSGGGAGSPPSAKKHRVFFSEEQKEALRLAFALDPYPSLATIEFLANELSLVSRTITNWFHNHRMRLKQSPQGDQAGSEDSFSGMTESSSRVNPEPRASRQDFDREEERVVLVKRDFELTKDRVGCANNEIDCVIVKLLFCVRPLPFPPKNNENTYRILNEKKTLELPRIETASVSGLLEALKNRLSVHDIYISDGLAALRSTQPQQIPSDYLHFCTAIYTGKCDRTRDDCPMWLARKEEEIKLNRNVMCNKLESIQKIKYLFTPSYEWNYFLVENYDVYFVFVVTVSGASKTGRCTVDYQPKSVLKTNADK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01479339;
90% Identity
iTF_01479339;
80% Identity
iTF_01479339;