Basic Information

Insect: Triatoma infestans
Gene Symbol: PRDM13
Assembly: GCA_011037195.1
Location: JAAEAF010001707.1:53720-58820[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 4 0.00013 0.05 16.0 0.3 1 20 124 143 124 145 0.95

2 4 7.6e-07 0.0003 23.1 1.8 3 23 300 320 298 320 0.96

3 4 2.3e-06 0.0009 21.5 0.4 2 23 327 348 326 348 0.97

4 4 6.7e-06 0.0026 20.1 1.3 1 23 355 378 355 378 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	4	0.00013	0.05	16.0	0.3	1	20	124	143	124	145	0.95
2	4	7.6e-07	0.0003	23.1	1.8	3	23	300	320	298	320	0.96
3	4	2.3e-06	0.0009	21.5	0.4	2	23	327	348	326	348	0.97
4	4	6.7e-06	0.0026	20.1	1.3	1	23	355	378	355	378	0.98

Sequence Information

Coding Sequence: ATGACTACCGCCCAATCACATGTTGTAGCCGGCGATGATCTACCACCGGGTTCACTTTCTTCTGACTTACCAATCAGTCTTCTAGCTTCACAATTACATCCAGATATTAAGatAAATGTAAAGTTGAACGCTAATGGACGAATGATAGCCGACAGAGAAGCGTGTCTAGTGCAAAGTATGAGACTTTCTGATGACATACACAGTTGCAATACTATATTAGATAAAGgttcaaaagaaaattgcttgatattacaaattacaaaaCCAGTCAGCAAAGGAGAACAGTTGGTATTATGGTTTTCACAAGAAATTCTTGCAGCAATGGATATACCTTTTTTGAACCCAATCAATATTAAAGGAGAAAAGTCTTACAACTGCCATAGATGTGGTAAAACGTTCGAATATCCAAATCctttgaaaattcatttggcGCTTGATTGTGATAAACAAAAACTAACAAATCTTTGGAAAAGATTACAGGAAAGCATTTTCATAGATAATggaaattcaaaacatttacatccacatgaatttattttacaactatCATTTAAGAATAACagtaataaagaattaataaaacctGATAGCGTTCTGCCACCATCACCTGGTTTTACATCGTATTCCAGTCCTTCACCGGATAGAATAGACCCATCTTGTGATGATAACAGGCCATCGTCAGAACCACCAAGACATTCAGCGTTCAAACCATATTTAAATTCACCTTGTAAAAGCAATGCCAGTGAAAGTAATTTACACATGCCATCCATTATTGAATACCATCAGGTACCAGTATTCAATGGCATCGAACAAAGtcgagaaatatatttaaatcaacAAGCAGCTGAAATAGAGACCCTTGTCAGCAACATGGGCCAATCGAAACAAGGACATCTTTGTCTGTATTGTGGtaaaatatattcaagaaaatatgGTTTAAAAATTCACATCAGaactcATACTGGCTTTAAACCTTTGAAATGTAAATACTGTCTTCGACCATTTGGAGATCCTAGCAATCTAAATAAACATGTAAGATTACATGCCGACGGTGATACTCCTTACAGATGTGAATTATGTAGTAAGATGCTGGTACGAAGAAGAGATTTAGAGAGACATATGAAGTCTAggcataatataaattttgtataa
Protein Sequence: MTTAQSHVVAGDDLPPGSLSSDLPISLLASQLHPDIKINVKLNANGRMIADREACLVQSMRLSDDIHSCNTILDKGSKENCLILQITKPVSKGEQLVLWFSQEILAAMDIPFLNPINIKGEKSYNCHRCGKTFEYPNPLKIHLALDCDKQKLTNLWKRLQESIFIDNGNSKHLHPHEFILQLSFKNNSNKELIKPDSVLPPSPGFTSYSSPSPDRIDPSCDDNRPSSEPPRHSAFKPYLNSPCKSNASESNLHMPSIIEYHQVPVFNGIEQSREIYLNQQAAEIETLVSNMGQSKQGHLCLYCGKIYSRKYGLKIHIRTHTGFKPLKCKYCLRPFGDPSNLNKHVRLHADGDTPYRCELCSKMLVRRRDLERHMKSRHNINFV*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01301851;
90% Identity: iTF_01301851;
80% Identity: -