Tinf007391.1
Basic Information
- Insect
- Triatoma infestans
- Gene Symbol
- RTase
- Assembly
- GCA_011037195.1
- Location
- JAAEAF010000519.1:130028-150760[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.1 39 6.9 0.1 1 20 675 694 675 696 0.94 2 10 0.00014 0.055 15.9 1.9 1 23 755 778 755 778 0.96 3 10 8.3e-06 0.0032 19.8 4.0 1 23 784 806 784 806 0.98 4 10 1.6e-06 0.00062 22.0 5.8 1 23 812 834 812 834 0.98 5 10 5e-06 0.0019 20.5 0.8 1 23 840 862 840 862 0.97 6 10 0.00027 0.1 15.0 0.5 1 23 868 890 868 890 0.96 7 10 0.00056 0.22 14.0 2.7 1 19 897 915 897 919 0.91 8 10 0.00026 0.1 15.1 3.1 1 23 925 948 925 948 0.96 9 10 0.00029 0.11 14.9 0.3 1 23 954 976 954 976 0.96 10 10 0.0014 0.55 12.8 6.3 1 23 982 1004 982 1005 0.96
Sequence Information
- Coding Sequence
- ATGATACGAAAACCTAGCAAATCTCCTACAGAGCCTACTTCCTACAGACCAATTAGTTTGCTTCCGATACTaggaaaattactagaaaaactgCTCATAAAACGACTTAGACACTATACAGACCGTATCATACCACAGCATCAATTTGGCTTCAGACAACTGCACTCTACTATTCATCAAATACAAAGAGTCACAACACACATTGCTAACGCTCTCGAATCCAAACAGATATGTACAGGCATTTTCCTAGATGTTTCACAAGCCTTCGATAAAAGTATATTTAGAGTAATTGTATTGGCTTTATGGGCATTACAAACAGTAGCTGAGCCTCCAGcttACGGCTCCTCTTCTGATGAATTTGATATTAACAGCATCAGTAGTTACTTGGATGATGATCAGACTGCAGCAGGAGTTAACAACAAAGGTGTTACTTATAGTTACAACAATGTCTACCAAGGACAGAATTCTAATCCAGAAAGATATAAAACCGCCACTAGTCCTTTTACTTTTGGACAAAAATCACCAGTAAGCCATGTTCCATCAAGCTCTGGAACTTATAATTCCCCTGCAGCAAGTTATAATCAAGCCTACAGTGTTTCACAAGCTAGCGTTGTAGATTATAACGGTGCCCACGGAGCTAACAGCTTCGGTAACTACGATGCATACAATGGCAATCCTGTAGGATTGGCAAGTTTTAGCAGCCCAGCATATTCTACTTTCAATGCATCTCCTTTGGTTGCACATGGAACTAATCCAGTTCCTTATACTGCTGCATCTCTTAAACCTGTTGGTTCTCCTCATAGTAACAGCTTACCTGGTTACACTGGAGACAATGTTTATGGCAGTACAAGTTCAGCCGCTTATCCAACTTCTGTCGTTGGCGGTTCATCTACTCATGTTGCTTCTGGAGCCTATGAAGGGCACCATGGTCATAATATACCATCCTCATTATCTAATCGCCCACCCTATCAATTTGAGAAACCAATAGGATCACCTCAgtttgtaaataactataagggCGGTTTAAGTTCATACACTTCATTCGAAGGTGGATTCAATAGTAGACCATCAAGACATCCAGGCTTATACAAAGGATTTAGTTCTAGTCCGCCAACTTATCTAAGCAGTTCATCTGGCCCAGCTGCACATATTGGTAGTCCATTAGGTTATAAATCTCCCTACTACTCAGAATATAAGGGAGGACCTGGTATTTATTACAGCCCAAGACCTCATTCACCATATGCAGGTTACAAATCTCCAAACAGCTTCGAATCATACCCTAGCGCACCTTATAAGTTTGTTAGTGAAAGTCCAAGATACCCCAGATACCCAGGTAAATACAGTTCTTCAAGACCGGGTTATAGTGGGACGAAAATTGGCTATAGCAGCCGTCCTCCGCCGTACGCAACTGGTTACAAATCATATAGCAGCAAACCTCCCACCTCTTCTTTTGCAGAAATTCGTAATTGTAGGTTGTGTTTTAGCGAAGAAGTTAACGAACATTCTTTATTTCAAATGGTTGATGATAATGGGATTTCACTCAGCACTAAGATAGTGCTGTGCACATCTCTAATGATGACCCAGGAAGACCTATATTCGGAATATATATGTCATAATTGTGTACAAAtgattgaattattttatgaattccGAAATACATGCTTGAAAACGCATATATCTATGTACAATGTGATACATGGAATTTCTCCATCGAAATATAATCTCACAGATcaggaaaatatgGAAAAGGAAAGTGGGGCAGACATCACTGCTAATCCAGAAGTGGAAATATTCAGTGAAAATAATGACACAGAACATTCAATTGAAATTGAATCAGTGGATGTTgataaaagagaaaacaaattattaagtatAACTCCAAGTAAAGGAGAATTAAATGAACATATTGATATTAATGAAGATTCTTCTAGACAGTTTCAGGTAGGATGTTATATACCAATTATAGATGCGGATAATACTCATTGTAGCAACACTAAAGAAACTGACTTATTACATAGACGATTTAAATGTatgaattgtaaaaatgtttatgcATCGTTGTCCGAATTAGATAATCATTGGGATATGTGTGAAAATGTAAAAGCGGATAGAGAAATGAAAATTCTTAACCAGGATTTTGTTCATACCCAGCATTCAGATGAAATTTGTTATGAGGACCCTGTCGTCAATGAAACAGTTGAAGAGGAACAAATTATCGAAAAGGAAGAATACAAACCTAAAAAACGATCATCTCGTAGAGAATTTTGTTGCGAATCATGCGGTCaggtttttaaacaattattactttTGAAACGTCATATTCAGGTTAAACATGTATGTGTCAGACCATACAGTTGTCCTCATTGTCCTAGAAAGTTTTTTGACAAATATGAGTTAAAATACCATCAACGTTTACATGAAGATATAGAAGATTTCTGTTGTAATATATGCAAAAGAAGGTTTTCTAGAAGATCAGGGCTGAAGACTCATATGCGCAGCCATACTGGTGAAAAACCATTCGATtgtaaaatatgcaataaaagTTTTGCACATCTTAATAGCCTTATAGCTCAcgaaagggtacacacaggagAACGCCCGTACATATGTAACTATTGTCCAAGGACTTTTGCACAATATTCTACAGCTAAGAGCCACGAAGAGATGCACATGGGTGGTTTAAGAATGTTTCAATGTGAAATTTGTGATAGAATGTTTAAGACTGAAACGGATTTATCAACACATTGTACATCCCATGAAGGATTACATGAATATAAGTGTTTATCTTGTAATAGAGGTTTTAAAAAACAATCGGAATTGAATAAACATAACCAAAGATATCATTGTGATAACAAACCCTACCCTTGTAATCAGTGTTCCAAATCATATGTTACATTGAGAGAACTGCAGTTACACGCTACTGTACACACTGGAGAATTACcatttacttgttttttatgTTCTAAAAGTTATCGTTTAAGTACAACTTTAAAAAGACATATGTATAAGCATCATTCGAATTCAGTTGGTTCAAATACATTTGAAATGAATGTTAAAACTTAG
- Protein Sequence
- MIRKPSKSPTEPTSYRPISLLPILGKLLEKLLIKRLRHYTDRIIPQHQFGFRQLHSTIHQIQRVTTHIANALESKQICTGIFLDVSQAFDKSIFRVIVLALWALQTVAEPPAYGSSSDEFDINSISSYLDDDQTAAGVNNKGVTYSYNNVYQGQNSNPERYKTATSPFTFGQKSPVSHVPSSSGTYNSPAASYNQAYSVSQASVVDYNGAHGANSFGNYDAYNGNPVGLASFSSPAYSTFNASPLVAHGTNPVPYTAASLKPVGSPHSNSLPGYTGDNVYGSTSSAAYPTSVVGGSSTHVASGAYEGHHGHNIPSSLSNRPPYQFEKPIGSPQFVNNYKGGLSSYTSFEGGFNSRPSRHPGLYKGFSSSPPTYLSSSSGPAAHIGSPLGYKSPYYSEYKGGPGIYYSPRPHSPYAGYKSPNSFESYPSAPYKFVSESPRYPRYPGKYSSSRPGYSGTKIGYSSRPPPYATGYKSYSSKPPTSSFAEIRNCRLCFSEEVNEHSLFQMVDDNGISLSTKIVLCTSLMMTQEDLYSEYICHNCVQMIELFYEFRNTCLKTHISMYNVIHGISPSKYNLTDQENMEKESGADITANPEVEIFSENNDTEHSIEIESVDVDKRENKLLSITPSKGELNEHIDINEDSSRQFQVGCYIPIIDADNTHCSNTKETDLLHRRFKCMNCKNVYASLSELDNHWDMCENVKADREMKILNQDFVHTQHSDEICYEDPVVNETVEEEQIIEKEEYKPKKRSSRREFCCESCGQVFKQLLLLKRHIQVKHVCVRPYSCPHCPRKFFDKYELKYHQRLHEDIEDFCCNICKRRFSRRSGLKTHMRSHTGEKPFDCKICNKSFAHLNSLIAHERVHTGERPYICNYCPRTFAQYSTAKSHEEMHMGGLRMFQCEICDRMFKTETDLSTHCTSHEGLHEYKCLSCNRGFKKQSELNKHNQRYHCDNKPYPCNQCSKSYVTLRELQLHATVHTGELPFTCFLCSKSYRLSTTLKRHMYKHHSNSVGSNTFEMNVKT*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -