Tinf017846.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Triatoma infestans
Gene Symbol
-
Assembly
GCA_011037195.1
Location
JAAEAF010001667.1:6380-12854[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 10 1.2e-06 0.00046 22.4 1.6 1 23 204 226 204 226 0.97
2 10 0.00027 0.1 15.1 1.8 1 23 232 254 232 254 0.94
3 10 7.5e-05 0.029 16.8 1.3 1 23 259 282 259 282 0.98
4 10 0.00019 0.074 15.5 2.0 1 23 288 310 288 310 0.95
5 10 1.9e-06 0.00072 21.8 1.2 1 23 316 339 316 339 0.96
6 10 3.6e-06 0.0014 20.9 0.5 3 23 358 378 357 378 0.99
7 10 1.2e-06 0.00048 22.4 1.6 1 23 384 406 384 406 0.98
8 10 0.00037 0.14 14.6 2.9 1 23 413 435 413 435 0.98
9 10 0.00034 0.13 14.7 0.1 1 23 441 463 441 463 0.98
10 10 6.6e-05 0.026 17.0 4.6 1 23 469 492 469 492 0.98

Sequence Information

Coding Sequence
ATGGATAGTTATGTTGAGCTAACATTTCAAAATGCTGAACAATGTTTATCGCTTGATAAACATTTGAATAGAAAGACGGATGGAGATAACAATGATTGCTATGCCTTCCTTAAAAGTGATCAAAATAACTCTGCTTATCACATGACGTTTACAAACATAAAAGTGGAAAATGCATCTGCTTTAAGCGATTCTGAGtgtaCCTTTAGGGATATAATAGCTGTACAAGAAGGAGtcaatttagaacaaaataatttattctacttaaaagaaaattcatctTCTCAAATTATTCAAACAATTGATAATAATCGATATGTAATATCACAAGTAGATAGAACGGATGATTCACTTACAAGTGCAttaatccaaataaatacaCCTGAAAAGGAATCAACTATTACATTTTCAGAAGATATGGGAGTTGGTAGTGAAGTAGATTATGCTAATGAAAGCATATTGAATGATGTAACATCTAGcaaTATAAATGAGTCAAAtgatcaaattaataaaaaagacattaatgaaaaatctataaataattatgatagaggaaataaaaaaaattctcaaaaaggcaaatctaataaaaagaacaaaaatgaaGATCAATACGAGTGTAATGAATGTGGGAAAACATATAGAGAAAAGAGTCATTTAGCAACACATTCAAGAGCACACATAAATATTAGAAACTTTAGCTGTGATGTTTGTGGGCAAAgATTCAAAACAAAAGCAAATTTATATTTCCATTCTCAGACTCATTCTGACACCCCATTTACTTGTACAGAATGTAATAAGACATTTCAAGAGAGAAGAATTCTGAAAAGACATATTAGAGTTGTACATAGccATAAAGAACTTCATAAGTGCAATCAGTGTGACAAAACATTCAAATCCGCAGCAGTTTTGTCATTACATTATACGTTGCATACTGATAGTAAACCTTTTAGATGTTCAATGTGTCCAAAAACTTTTGTCTACAAGAGTACCTTAGCTACGCATATTAATCAATATCATCAATGTAGCTCATGTTTGCCATCCACATGTCGGCATAGTTCAAGACCCTGGCTTTGTACTGTCTGTGGAAAAGGATATTCTCTTAAAGGAACACTAAATACGCATATGAGAACGCATGATCCAGAAAAACATTacaaATGTACGCAATGTCCTAAAACTTTTGCTAATAAAATGTCTTATGAAACACATATGAAATGGCATGCAGGTGAAGGGCCACAATATATGTGCGATCAATGTTCCAAGTCGTATTTTAATGTTTTCGCATTGAGAAGGcattataaaaaacatatttcacaaaaaaatttcatCTGTGAAGTTTGTTCAAAAGCTTATTGGATGAAGGATGCGTTGAAGGTACATATGCGATCTCATACAAATGTTAAACCATTCCAATGTCAAAAATGTCCGAAAGCATTCTTTCATAAGCATTCATTGGAAGGACATATAAAAAGTAACCATTCAGTACAAGAACAGCAGCAAACAGTTTCCAGGAATGAGATTCAACTGCCTGCAGCTGCACCAATTTCGGCTACACCAGCGCCTCCACCGCTTCCTTCAATTATTCCACAACAATTTTTATGTTATCAACTAGCTCCAGTACTACAAACTGTTACTAACGATCAAAATACTTCTCATGTACTTCAAGTACTTTAG
Protein Sequence
MDSYVELTFQNAEQCLSLDKHLNRKTDGDNNDCYAFLKSDQNNSAYHMTFTNIKVENASALSDSECTFRDIIAVQEGVNLEQNNLFYLKENSSSQIIQTIDNNRYVISQVDRTDDSLTSALIQINTPEKESTITFSEDMGVGSEVDYANESILNDVTSSNINESNDQINKKDINEKSINNYDRGNKKNSQKGKSNKKNKNEDQYECNECGKTYREKSHLATHSRAHINIRNFSCDVCGQRFKTKANLYFHSQTHSDTPFTCTECNKTFQERRILKRHIRVVHSHKELHKCNQCDKTFKSAAVLSLHYTLHTDSKPFRCSMCPKTFVYKSTLATHINQYHQCSSCLPSTCRHSSRPWLCTVCGKGYSLKGTLNTHMRTHDPEKHYKCTQCPKTFANKMSYETHMKWHAGEGPQYMCDQCSKSYFNVFALRRHYKKHISQKNFICEVCSKAYWMKDALKVHMRSHTNVKPFQCQKCPKAFFHKHSLEGHIKSNHSVQEQQQTVSRNEIQLPAAAPISATPAPPPLPSIIPQQFLCYQLAPVLQTVTNDQNTSHVLQVL*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01479623;
90% Identity
iTF_01478956;
80% Identity
-