Tinf016836.1
Basic Information
- Insect
- Triatoma infestans
- Gene Symbol
- -
- Assembly
- GCA_011037195.1
- Location
- JAAEAF010001544.1:212827-214083[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.059 23 7.7 9.9 1 23 45 67 45 67 0.99 2 13 1.5e-05 0.0059 19.0 0.9 1 23 73 95 73 95 0.98 3 13 0.00025 0.096 15.1 1.5 1 23 101 123 101 123 0.99 4 13 0.00034 0.13 14.7 1.5 1 23 129 151 129 151 0.99 5 13 3.8e-05 0.015 17.7 3.6 1 23 157 179 157 179 0.99 6 13 3.2e-05 0.013 17.9 4.5 1 23 185 207 185 207 0.99 7 13 3.5e-05 0.013 17.8 0.6 1 23 213 235 213 235 0.97 8 13 6.1e-05 0.024 17.1 4.1 1 23 241 263 241 263 0.99 9 13 2.5e-05 0.0095 18.3 0.3 1 23 269 291 269 291 0.99 10 13 1.6e-05 0.0062 18.9 0.4 1 23 297 319 297 319 0.99 11 13 0.00011 0.041 16.3 5.0 1 23 325 347 325 347 0.99 12 13 0.00012 0.046 16.2 0.9 1 23 353 375 353 375 0.97 13 13 0.00027 0.11 15.0 5.2 1 23 381 403 381 403 0.99
Sequence Information
- Coding Sequence
- ATGGACGATTTGAGAAAACATATGGAAATATCAATTGACGAAAATCCACATAATAATGGTGAATGCAGTTATAGTTGTACACAATCCGAAAAATTGATAGGACAAATGACAAGACTTACTGAGGAAAAGCCATACAAATGTACTGCATGCAATTATAGTTGTAAACATTCCCTACATATGAAATACCATATTCGTAAACATACTGGAGAAAAGCCCTACAAATGTGGTGAATGCGACTATAGTAGTAGAAAAccagaatatttgaaaaatcatgTGAGGCAGCACACTGGCGAAAAGCCATACAAGTGCAGTGAATGTAACTACAGTTCTATATATTCCGAAAGACTGAAAGAGCATGTGAGAAAGCATACTGGAgaaaagccgtataaatgtggtGACTGCGATTATACTTCTATATATTCTATAAGATTTAAAGAACATATGAGAAAACATACTGGAGAAAGGctatataagtgtagtgaatgtcACTATAGTTCAATATATTCCGGAAAATTGAAAGAACATATGAGAAAACATACTGGAGAAAAACCATTTAAGTGCAGTGAGTGCACTTATAGCTGTACATCTTCTGCAAGATTGAAACAACATATGCAAACACATACTGGGGAAAAGCCTTATAAGTGTGGTGAATGCAATTATAGTAGCATAACActcacaaatttgaaaaatcatatGGGAAACCATACTGGGGAAAAGCCATATAAGTGCGGTGAGTGCACTTATAGCTGCAAATCTTCTGTAAGACTGAAACAACATATGCAAACACATACTGGGGAAAAGCCTTATAAGTGtggtgaatgcgattatagtaGCATATCACTGGcatatttgaaaaatcatatGGTAACCCATTCTGGAGAAAAGCTATATAAGTGCggtgaatgcgattatagtgCCATAACACAGACATATTTGAGAAATCATATGGTAACCCATTCTGGagagaagccatataagtgcTCTGAGTGCACCTATAGCTGTAAATCTTCTATAAGACTGAAACAACATATGCAAACACATACTGGGGAAAAGCCTTATAAGTGTGGTGAATGCGGTTATAGTAGCATATCACTGGCATATTTGAAACATCATTTAGAATACCATGTTGGAGACATGCAATATAAGTGCTATGAGTGCACTTTTAGTTGTAGATCTTCTGGAAGACTGAATCAACATATGAAAACACATTACTGGAGAAACCGCATAAGTGTGGTGAATGGAATTATAGTAAcataa
- Protein Sequence
- MDDLRKHMEISIDENPHNNGECSYSCTQSEKLIGQMTRLTEEKPYKCTACNYSCKHSLHMKYHIRKHTGEKPYKCGECDYSSRKPEYLKNHVRQHTGEKPYKCSECNYSSIYSERLKEHVRKHTGEKPYKCGDCDYTSIYSIRFKEHMRKHTGERLYKCSECHYSSIYSGKLKEHMRKHTGEKPFKCSECTYSCTSSARLKQHMQTHTGEKPYKCGECNYSSITLTNLKNHMGNHTGEKPYKCGECTYSCKSSVRLKQHMQTHTGEKPYKCGECDYSSISLAYLKNHMVTHSGEKLYKCGECDYSAITQTYLRNHMVTHSGEKPYKCSECTYSCKSSIRLKQHMQTHTGEKPYKCGECGYSSISLAYLKHHLEYHVGDMQYKCYECTFSCRSSGRLNQHMKTHYWRNRISVVNGIIVT*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -