Tinf029155.1
Basic Information
- Insect
- Triatoma infestans
- Gene Symbol
- -
- Assembly
- GCA_011037195.1
- Location
- JAAEAF010003335.1:8579-13157[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.00012 0.045 16.2 1.2 1 19 272 290 272 294 0.89 2 12 0.00047 0.18 14.3 0.3 2 23 297 319 296 319 0.96 3 12 2.3e-06 0.00089 21.6 1.6 2 23 363 384 362 384 0.98 4 12 8.1e-05 0.032 16.7 0.5 1 23 390 412 390 412 0.97 5 12 8.8e-05 0.034 16.6 2.6 1 23 418 440 418 440 0.99 6 12 2.1e-06 0.00083 21.6 1.2 1 23 446 468 446 468 0.98 7 12 0.0011 0.41 13.2 1.7 1 23 474 496 474 496 0.96 8 12 6.6e-07 0.00026 23.2 0.5 1 23 504 526 504 526 0.98 9 12 0.0012 0.46 13.0 0.2 1 23 532 554 532 554 0.96 10 12 2e-05 0.0077 18.6 1.2 1 23 560 582 560 582 0.98 11 12 0.00011 0.042 16.3 0.2 1 23 588 610 588 610 0.98 12 12 9.2e-07 0.00036 22.8 1.7 1 23 616 638 616 638 0.98
Sequence Information
- Coding Sequence
- ATGGCAACAGTTAGTATGCAGTTATCAGAATTTAGCGAATTGTGCCGATTGTGTGGTGCCAAAACCAGTGTTCTTTTAGGATTACATATTTTTGAAAGAGAGGGAAATTTAAggcaaatttataagaaaattactgCATGTCTTCCTATACAAGTAAACAACAACGATAAACTCCCAAAAATGGTTTGTGAAGAGTGTGTATATAAATTAGATGCTCTATTTGATTTTCGTGAGAAGAGTATGAAAACTGAATATGTACTAAATAATAtgctaaaaaatttgtataatccCCCTGTAAACAACGAACTTGGAATTCAGATGGATACATTGTTATGCGGAGCTCCACTAAATACAGATAGTCTTCATATAAGACCTCAAGTAGAGGTTGATGTTCATTTGGATAATAACGCAGAACACTTAGATGCAATAATTGGACTGCCAGTAAACAACAGTGATTCTAATGTTAAGTGCGAATCCGAACTTGCAGCTATAAAGACAGACAATGGAACTAATGGAGGACCAGGAAGTGGCAATAGCAGCGGAGGTAGTGGTGTAAAAGGTGAAACTACAACCGAATCTGACTGTTGTGAATCTGACAGTGACTCATTAGGTGTTCATGATCAGAGTGAATCCTGTTCGATTCAGCCATTTAATACGATTGATCATAGAGATCCTATTGATACGACCAGAATGGAAGTCACAGATattgggttacatgaacttggtgaagcACCTTTGAAAAATGGTACTACAGAAGTCATACACCCTACTGGAAATTATATAGTAACATCTCAAACAGAACCTCAGACTTGGTTTTTTTGTAACATATGTGGCAAACCATTTGATAATAGTGAAGAATTTCAAGCACATTGCGAAATACATTGGAAGAAATGTGGTATATGCGGTGTGTCCTGTGCAAATGAAAAGGCTTTATTGGACCACATGAGAGATGAACATCCTAGACAGACAAATTCCTCTCTTCCATCCATACAACAAGTACAAAACGAAGAATGTGAAGCTATTAAGAAGAAATCAGCATTAGATAATGGAACTCAATCAAAAAAAGTGGGGAAAACTGATGGAAAACGGTGTGATCAATGTGGAAAAGAATATAAGACCAATTATAAGCTAGCCGAACATATGCGAAAGCATACAGGTGAAAAACCATTTAAGTGTAGTGCGTGTGATAAAACTTTTCGTTCGAAAATTGGTTTAGCACAACATGAGGCTAAACATACTGGGCATTATGATTATACTTGTAATACTTGCGGTAAAGGATTCCAGTGTAAATCATACCTAATTGTTCATCAGCGAGTACACAGTGATCTTAAACCATATCCATGTGATACTTGTGGAAGAAATTTTAAGACTAAACAAAGCCTGTTAGATCATCAGAACAGGCATCTCGGTGTGAAGCCTTATTTATGTGAAACCTGCGGTAGAGGATTTATTACTAAGggcTTATGCAAATCCCATCAGAGGGTACATTCAGGTACAGATAACCGTCAGTATCCATGCACtgtatgtaataaattattcgtTAGCAAATCATACCTAGTCACCCATATGAGGATCCATACTGGCGAAAAACCTTTCATGTGTGAGGTGTGTGGCAAAGGCTTTTTAACAAGGGTTGATTTGAAAATACATTCAACTATGCATACAGGTGAAAAAAGTTTTGTATGCGAAGTATGCGGTAAAGCTTTTGCTCGAAGGGACGCCCTAAGATGCCATAAACGTAGCCACACAGGAGAACGGCCGTATAAGTGTGATATTTGTGGGCAAGGTTTCACACAGTTTTCACCGATGGCAATACATAAACGTTTACACACTGGCGAACGGCCTTACTCTTGTGATATATGTGGAAAGACTTTTGTATCTAGATCAACAATGATGTCGCATAGGAAAAAACATATTGCATGA
- Protein Sequence
- MATVSMQLSEFSELCRLCGAKTSVLLGLHIFEREGNLRQIYKKITACLPIQVNNNDKLPKMVCEECVYKLDALFDFREKSMKTEYVLNNMLKNLYNPPVNNELGIQMDTLLCGAPLNTDSLHIRPQVEVDVHLDNNAEHLDAIIGLPVNNSDSNVKCESELAAIKTDNGTNGGPGSGNSSGGSGVKGETTTESDCCESDSDSLGVHDQSESCSIQPFNTIDHRDPIDTTRMEVTDIGLHELGEAPLKNGTTEVIHPTGNYIVTSQTEPQTWFFCNICGKPFDNSEEFQAHCEIHWKKCGICGVSCANEKALLDHMRDEHPRQTNSSLPSIQQVQNEECEAIKKKSALDNGTQSKKVGKTDGKRCDQCGKEYKTNYKLAEHMRKHTGEKPFKCSACDKTFRSKIGLAQHEAKHTGHYDYTCNTCGKGFQCKSYLIVHQRVHSDLKPYPCDTCGRNFKTKQSLLDHQNRHLGVKPYLCETCGRGFITKGLCKSHQRVHSGTDNRQYPCTVCNKLFVSKSYLVTHMRIHTGEKPFMCEVCGKGFLTRVDLKIHSTMHTGEKSFVCEVCGKAFARRDALRCHKRSHTGERPYKCDICGQGFTQFSPMAIHKRLHTGERPYSCDICGKTFVSRSTMMSHRKKHIA*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01479606;
- 90% Identity
- iTF_01301778; iTF_01479606;
- 80% Identity
- -