Tinf048885.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Triatoma infestans
Gene Symbol
-
Assembly
GCA_011037195.1
Location
JAAEAF010008158.1:45552-49000[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 19 0.018 6.8 9.3 2.7 1 22 60 81 60 81 0.93
2 19 5.1e-06 0.002 20.5 2.8 1 23 88 110 88 110 0.99
3 19 8.8e-06 0.0034 19.7 1.9 1 23 116 138 116 138 0.99
4 19 2.5e-06 0.00096 21.4 5.3 1 23 144 166 144 166 0.99
5 19 0.00086 0.33 13.5 2.8 1 23 172 194 172 194 0.99
6 19 1.1e-06 0.00042 22.6 3.3 1 23 200 222 200 222 0.98
7 19 1.2e-05 0.0047 19.3 4.4 1 23 228 250 228 250 0.99
8 19 8.4e-06 0.0032 19.8 2.7 1 23 256 278 256 278 0.98
9 19 1.6e-05 0.006 18.9 3.4 2 23 285 306 284 306 0.98
10 19 9e-07 0.00035 22.8 2.3 1 23 312 334 312 334 0.98
11 19 9.7e-06 0.0038 19.6 3.8 1 23 340 362 340 362 0.99
12 19 8e-05 0.031 16.7 5.4 1 23 368 390 368 390 0.98
13 19 1.8e-06 0.00071 21.9 3.7 2 23 397 418 396 418 0.98
14 19 3e-05 0.012 18.0 3.8 1 23 424 446 424 446 0.99
15 19 7e-05 0.027 16.9 1.5 1 23 452 474 452 474 0.98
16 19 0.00021 0.082 15.4 6.9 1 23 480 502 480 502 0.99
17 19 1.2e-05 0.0046 19.3 2.7 1 23 508 530 508 530 0.99
18 19 4e-05 0.015 17.7 3.8 2 23 537 558 536 558 0.97
19 19 6.1e-05 0.024 17.1 4.3 1 23 564 586 564 586 0.99

Sequence Information

Coding Sequence
atgatcacTGATGCTGAACTTTATTTTCTAGATTGTCACAACCCAGCAGAAAATGAAGATTTCTCTAATCAAGATATGGAAGTATACAGAAGTGAAATGATTAAGGAAGAATATGTCAGTGCCATGGAGGAAGGAGAATTAGTAACACCCGCGGCAACTCCTATTGAAGAGGTGCAATATAATTGCAGTGCTTGCGACTGTAATTTTACAACTTCGGAGTTATTGGAGGTACATAAGTGTACATACCAAACTGATGAGATGTATAggtgtaatgaatgtgattacagatGTGCGACATCAGAGTCATTGAAATTACACATTCGTAAACATACTGGCAAGAACCTATATAAATGTGGTGGATGCGACTACACTTGTGCTAAGTCCTCAAGATTGAAGATACATATGCGTATACATACgggcgagaaaccatataagtgtagtgaatgtgatttcagttgtaatCATTCCTCAAATTTGAAAGTACATATGCTAACACATTCAGGCGACAaaccatataagtgtagtgaatgtgattacagttgtatcCTATTACGGGCTTTCAAGTTACACATTCGTAAACATACGGGCGAGAAGCCATTTATGTGTAATGAATGTGGTTACAGTTGTACTAGTTCCTCAAGATTGAGGGAACACATGCGTACACATTCAGGCAACAaaccatataagtgtagtgtatgtgattacagttgtactcATTCCCCATATTTGAAAGTACATATGTTAACACATTCAGGCGACAAACCATATaagtgtaatgaatgtgattacagttgcaCTACTTCCACAGGACTGAAAGTACATGTGCGTCaacatacaggcgagaaaccaattaagtgtagtgaatgtgattacagctGTACTAATTCCACAAGACTGAGGGAACACATGCGTACACATTCAGGCAACAAACCATATGCATGTAGTGGATGTGATTACCGTTGTACTTCTTCTTCAATGTTGAAGGTACATATGCGTACACATACgggcgagaaaccatataagtgtagtgTATGTGGTTACAGTTGTACTAATTCCACAAGTGTAAAGCTACACATGCGTAAACATACTGGCGACAAACCATTTAGGTGTAgcgaatgtgattacagttgtactaCTTCCTCAGTATTGAAGGTACATATGCATAAACATACGGGCGAGAAACCAATTAAGTGCAATGAATGTGATTACCGTTGTACTTCTTCCTCAAAGTTGAAGATACATATGCGTACACATACGGGAGTGAaaccatataagtgtagtgTATGTGATTACTGTTGTACAGTTCCCGCAAGATTGAGGGAACACATGCGTACACATTCAGGCTACAAACCATATGCATGTAGTAGATGTGATTACCGTTGCGCTTCTTCCTCAGTGTTGAAAGTACATATTCGTACACATACgggcgagaaaccatataagtgtagtgTATGTGATTACTGTTGTACTAATGCCACAAGCTTAAAGCTACACAAGCGTAAACATACTGGCGACAAACCATTTAAGTGTAgcgaatgtgattacagttgtactaCTTCCCCAGTATTGAAGATACATATGCGTAAACATACGGGCGAGAAACCAAttaagtgtagtgaatgtgattacagctGTACTAATTCCACAAGACTAAGGGAACACATGCGTAAACATACAGGCTACAAACCATATAGATGTACTGGATGTAATTACAGTTGTGCCACGTCCACAAGATTGAAACTGCATATGCGTAAACATACAGGTACAGGAAAGGTCAGCGGCCACTCAGTCTCGTTAAGCTTTAACCATTCTGGACCCTCCCACCATTTAGGAAGGGCCAGTTCTCATGGCATGCACCCTCGACTTAACAAATCTGCTGGGTTTAACAATCCAGGGACGTGA
Protein Sequence
MITDAELYFLDCHNPAENEDFSNQDMEVYRSEMIKEEYVSAMEEGELVTPAATPIEEVQYNCSACDCNFTTSELLEVHKCTYQTDEMYRCNECDYRCATSESLKLHIRKHTGKNLYKCGGCDYTCAKSSRLKIHMRIHTGEKPYKCSECDFSCNHSSNLKVHMLTHSGDKPYKCSECDYSCILLRAFKLHIRKHTGEKPFMCNECGYSCTSSSRLREHMRTHSGNKPYKCSVCDYSCTHSPYLKVHMLTHSGDKPYKCNECDYSCTTSTGLKVHVRQHTGEKPIKCSECDYSCTNSTRLREHMRTHSGNKPYACSGCDYRCTSSSMLKVHMRTHTGEKPYKCSVCGYSCTNSTSVKLHMRKHTGDKPFRCSECDYSCTTSSVLKVHMHKHTGEKPIKCNECDYRCTSSSKLKIHMRTHTGVKPYKCSVCDYCCTVPARLREHMRTHSGYKPYACSRCDYRCASSSVLKVHIRTHTGEKPYKCSVCDYCCTNATSLKLHKRKHTGDKPFKCSECDYSCTTSPVLKIHMRKHTGEKPIKCSECDYSCTNSTRLREHMRKHTGYKPYRCTGCNYSCATSTRLKLHMRKHTGTGKVSGHSVSLSFNHSGPSHHLGRASSHGMHPRLNKSAGFNNPGT*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-