Tvap009018.1
Basic Information
- Insect
- Trialeurodes vaporariorum
- Gene Symbol
- prdm10
- Assembly
- GCA_011764245.1
- Location
- HIC:13079932-13115528[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.00077 0.052 14.0 2.9 1 23 673 695 673 695 0.98 2 11 0.00053 0.036 14.5 0.5 2 23 780 801 779 801 0.96 3 11 0.0065 0.44 11.1 0.7 1 23 811 833 811 833 0.94 4 11 9.7 6.6e+02 1.1 3.3 3 23 843 863 841 863 0.95 5 11 0.016 1.1 9.9 0.8 1 23 869 891 869 891 0.96 6 11 2.9e-05 0.0019 18.5 5.6 1 23 897 920 897 920 0.98 7 11 0.0002 0.014 15.9 0.3 2 23 926 947 925 947 0.95 8 11 8.8e-06 0.0006 20.2 1.4 1 23 953 976 953 976 0.93 9 11 0.023 1.6 9.4 0.4 1 23 1017 1040 1017 1040 0.95 10 11 0.00054 0.037 14.5 3.5 1 23 1062 1085 1062 1085 0.97 11 11 0.0086 0.59 10.7 5.4 1 23 1126 1149 1126 1149 0.97
Sequence Information
- Coding Sequence
- TTTCCAGCATCTGAAAATTCCGAGCCTCGCTGTCTGTCATCGGTAAAATTGTAATCTTATTAGTTTTCTAAGAATGTGGGCATGTTATCTCGCTTTTCCCTTCATCGATTTCTATCACCAGCTTTTGGTGAATTTTCCTGACAATTTTTCGGTCTGATGGAGTTTTCTTTACAGTGCTGATTCCAGGTTTTAGTGTAAATGAAGAGCGATCCCATGGCAGGCAGCTGTGGACCTATGGTTGGTGGAGGGAGAGCCTCTAAAGAGAAAAGCTTGGTGTCTCCCATGGAGCTTTGGTCCCCCACCTCTGCTCCCTCAGCTGGAGATGACAAAGCCGCTTCGCAGCTACTCTTCCTCACTGTTGAATATGTGGAAGAAGGTGCAACGGTGCCCTCTAATCCGCCTCTGTTTGATCCGGCAGTCTCCGAATCATTGCCAGAATTTCAACCGAGGGTTGCAAGTCCGTTAGACTCAAATTTAGATGCCATGGCTAGGTATTCTCCGATTGAAACATTGTCGAAGTCAGAAGGATCAACCATTACTGAGCCAATTTATCCGGACAGTTTTTCCTCGCCTTCCGTGTCAAATTCTCTGGATGTGTTCCAAACTCCTATTTCTTCAGCAACATCAACGCATGAGCAAAATCCTCAGTTAATTATCATGGATACGTTTTATTCTCAAAGAGGCGCCCAGCTATCAGATTTGGAACCGTCTGACGTAGAAGACTTTTCTAATTCAGAATATATCATGCAAGAAGCATCCGATAAGCTGCTACTAGATCCTCTATCTCTGTCTTCTTCCGAGCTTCTAATATCTGTGGAGGATGCTGCAACCATATTTCCAAACAATAAGTCAAATGGGCGAATAGAATTGTTACTGAGCAACGGAAATATTGCGTACGGTCTAATCGACTCCTTGTCTACTCCTCGTGTGTTACAGGTTCCTAAAGAATATCTAGTTAATTCAGGTCGCTTGAGTCTGGATGATTCAGCGATTGAAACCGATCCAGAATTAAAATCTATTTTCATTGAAAAATCTCCTGATCCAAAATGGGGCCAGCCAGTGAACCTTGAAGCCCTCAGAAGCAGTGCATTTTCAGATGACGCCAAATCAGATCTTCTGAATCATACTCTAGTGAAAGAATCACCTGTCATCCTTCATGGAAATAGTTTGACAGAAGCTTTGTCAAAAAATGATGGGATGGGAGGTGTTGGAAGAACCAAAATCTTGGAATCATCCCTACCTCACTCAGATCTAAATGTTGACAACTCTTCATTTTGGTGTGAGGACTGCAACTGCTTTTATCCGTCAGAATGTATCAAACACAGATTTCAAACGATCTGTGACAAACCAGTTTTATCAAGAGCACGTGCAACCCTACCTGTGTCCTATCTTGTTATCAATGAAATCAAGAGAGATAGAGGAGTACTTGGAGTATTTGCAAGGAAATCAATCCCGAAGCGAACTCAATTTGGACCCGTCGAAGGAGTCTTTTTAGAGAACCGTGACATGATAAAACGGAAAGCTGATTCTCACAAGTGGACCTTCAAATTTTCTGTAGAAGCCAAACCCCAAAAGTTCCTCGAGCTTGATGTATCGGATGATGATACTGCCAACTGGATGAAGTTTGTGAGACCTGCAACGGACATCTGTCAACAAAACTTACGTTTATGCCAGCAAGGCACCAAACTGTTCTACATCACCACCAAGGTTATTCCTCCGAAGCAAGAACTTCGAGTTTGGTACAGCGCTGTCTATGCTCGCAAGAGAAATCTTCCTTCGCTTGAAGGAAATGTTTTTCTAGAAGAAACGGATGACGATATTGGTGTTGAAAATCAAGATAACTCAATTAATAAAAATGATGAGGCCATTGTCTGTGCTGATGATACGAAGACTGATTCTGATGGTGATGGGATTGTCGAGTTAGAAAATCCTGCAGTTCATTGGAAAAAGAAAAACAAGAAATTCGCCATGTTTGGAAAATCCAAATTGGGTAACCTAGGCAATCAGAAATTAGATTTTCACTGTGAAGTATGCAGTCAAAAATTCGGAAGACTCTCAAAATTACTGCAGCACATGACTACTCATGTGAAACTGGAAAATCAAGATGGATCATCTCCACCACTTGATGATATCAAGGAAGAAAATTGTGAACGCCTGGACTCTGACAAAGAAAATAATTCGCAACAAAAAAGTGATAAACCAACCAGCCCTCCAAACCTCTCCAAATGGCATTGTGTTAGATGTAATCTTTTCTTTCCTTTTGGTATCATCTATAACTTACACATGCTAACCCACTCCAAGATGAAAGAAGATTTTTCATCCGTCAAAACTCTTTGGATCTGTCCTCAGTGTCACACGGAATTTAAGAGCAAGCAGGAATTAGCCGAGCACGCAAGCACCCACGCAGTGGTTTTGAACTATCCTTCACCGTTCTATTGTTCGAGGTGCTCTAGAACTTTTGCTAATGCAGATCGATGGAAACGTCACGAGGTCGTCCACAAGCAAGAAGATTCGAAACCCTACGGGTGCACCACTTGTTTCCGTAGATTTCTAAGTAACTCTGCTCTCATCTGTCATATGAAATTCCATGAAAGTAACAAAATATACAACTGCCCGATCTGCAAAGCCAATTTCAACAAAGTACTCTCATTGAAATCTCATATCCATGCGCACTGCACCAATGGAATTTACAAGTGCCCTCACTGTCCGAAAGAATACTCGCAGTACACGCACATACGAAAGCACATTCGAACTTTTCATTGCGACCAAAAACTCTCTTGTCAAATTTGTAACAAAGCATTTCCAACTGCAGATAAGCTGCGGCTTCATTCGTTGAAACATTCGGATCATAAAGAATTCTTGTGCTCGACTTGCGGGAAACAATTCAAACGGAAAGATAAACTGAAGGCGCATATTGATAGACTTCACTCAGCCGAGCGGGAAAAAGTTACAAGTCAACATCCAGATGAATTAATCAAAGCTCCTCATCCAGTCAAAAAATTACCACCCAAACTCCTCGTGAGTTCGTCAGACTACTCTCGATACTTCTACAAGTGCAATTTATGTATGGTCGGTTTCAAGAGGCGAGGAATGCTTGTGAATCATCTAGCAAACCGTCACCCAGATGTACCTCCGGATTCAGTGCCTGAGCTTAGTTTACCTATACTCCAAACAAGGCGCAATTATTACTGTCAGTACTGTGATAAGATTTACAAAAGTAGTTCCAAAAGAAAAAATCATATTTTGAAATATCATCCTGGATCGGCCTTGCCGTTAAGCAACAGATTAAAGTTTCAGCCAGGAAACTCTTTAGATGTTAATCAGTTACCGAACGCAACATTCTCTCGAACTGTCGGAAGTGTCACGTCAAATCCACATTCTTGTCAATGGTGTCACAGGCAGTATGCCTCCAAAGCCAAACTGTTGCAGCACCAAAGGAAAAAACACAAGGATATGATGAAATCCATTCCAAAAAAGGAGACAAGTAGGAAACCATCTCAATTGAAATTAGTCAACAACAAATTTCGTGAAACTCTGCCCGATCTATCCTCCGACTGCGGTCTTCCAATTGCAGAAATGGAGCCTCGTGATTGTCAACTAGCTAACCTGAAGCGGGATATCAAGGATGGTCTAACGGTAGAATTCCTCAATCAAGCGATTTCTGTCCTCGGTCCGGAGTTAACGGATCTGATCACTTATGTGAACGATGGCAACGGAGAACAAACATGCACCCTAAACCTAACGGAAGAGCAGTACATGAAGATAATGCAACAGGCGCCAGCAGCACCGCCCTCAAACTCTTTGCCGGCGATGCCAATTCCATTAGACACGAATTCACAAGCTGTGGCAACCATCAGTGAAGTTGTCACCTCTGAGCCTATCTTATCTCAATCGACACTAAGCTCATATTCGTTCACAACCTTTCAATCCATTTACAGTACTCCTTTTACTGCGCGATAATGAAATTAGCTCAAAAGAAAATTG
- Protein Sequence
- FPASENSEPRCLSSVKL*SY*FSKNVGMLSRFSLHRFLSPAFGEFS*QFFGLMEFSLQC*FQVLV*MKSDPMAGSCGPMVGGGRASKEKSLVSPMELWSPTSAPSAGDDKAASQLLFLTVEYVEEGATVPSNPPLFDPAVSESLPEFQPRVASPLDSNLDAMARYSPIETLSKSEGSTITEPIYPDSFSSPSVSNSLDVFQTPISSATSTHEQNPQLIIMDTFYSQRGAQLSDLEPSDVEDFSNSEYIMQEASDKLLLDPLSLSSSELLISVEDAATIFPNNKSNGRIELLLSNGNIAYGLIDSLSTPRVLQVPKEYLVNSGRLSLDDSAIETDPELKSIFIEKSPDPKWGQPVNLEALRSSAFSDDAKSDLLNHTLVKESPVILHGNSLTEALSKNDGMGGVGRTKILESSLPHSDLNVDNSSFWCEDCNCFYPSECIKHRFQTICDKPVLSRARATLPVSYLVINEIKRDRGVLGVFARKSIPKRTQFGPVEGVFLENRDMIKRKADSHKWTFKFSVEAKPQKFLELDVSDDDTANWMKFVRPATDICQQNLRLCQQGTKLFYITTKVIPPKQELRVWYSAVYARKRNLPSLEGNVFLEETDDDIGVENQDNSINKNDEAIVCADDTKTDSDGDGIVELENPAVHWKKKNKKFAMFGKSKLGNLGNQKLDFHCEVCSQKFGRLSKLLQHMTTHVKLENQDGSSPPLDDIKEENCERLDSDKENNSQQKSDKPTSPPNLSKWHCVRCNLFFPFGIIYNLHMLTHSKMKEDFSSVKTLWICPQCHTEFKSKQELAEHASTHAVVLNYPSPFYCSRCSRTFANADRWKRHEVVHKQEDSKPYGCTTCFRRFLSNSALICHMKFHESNKIYNCPICKANFNKVLSLKSHIHAHCTNGIYKCPHCPKEYSQYTHIRKHIRTFHCDQKLSCQICNKAFPTADKLRLHSLKHSDHKEFLCSTCGKQFKRKDKLKAHIDRLHSAEREKVTSQHPDELIKAPHPVKKLPPKLLVSSSDYSRYFYKCNLCMVGFKRRGMLVNHLANRHPDVPPDSVPELSLPILQTRRNYYCQYCDKIYKSSSKRKNHILKYHPGSALPLSNRLKFQPGNSLDVNQLPNATFSRTVGSVTSNPHSCQWCHRQYASKAKLLQHQRKKHKDMMKSIPKKETSRKPSQLKLVNNKFRETLPDLSSDCGLPIAEMEPRDCQLANLKRDIKDGLTVEFLNQAISVLGPELTDLITYVNDGNGEQTCTLNLTEEQYMKIMQQAPAAPPSNSLPAMPIPLDTNSQAVATISEVVTSEPILSQSTLSSYSFTTFQSIYSTPFTAR**N*LKRKL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -