Tvap010979.1
Basic Information
- Insect
- Trialeurodes vaporariorum
- Gene Symbol
- lola
- Assembly
- GCA_011764245.1
- Location
- HIC:46509386-46533810[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 0.00074 0.05 14.1 2.2 1 21 136 156 136 157 0.96 2 20 1.1 73 4.1 0.2 3 23 167 188 165 188 0.92 3 20 0.13 8.6 7.1 1.4 1 21 259 280 259 281 0.93 4 20 0.028 1.9 9.1 0.7 1 23 289 312 289 312 0.94 5 20 0.051 3.4 8.3 0.7 1 21 359 380 359 381 0.95 6 20 0.0021 0.14 12.7 1.2 1 23 389 412 389 412 0.94 7 20 0.00069 0.047 14.2 1.6 1 21 454 475 454 476 0.96 8 20 0.03 2 9.0 3.2 1 23 484 507 484 507 0.95 9 20 0.019 1.3 9.6 1.4 1 21 554 575 554 576 0.94 10 20 1.1 72 4.2 0.4 1 14 584 597 584 600 0.86 11 20 0.0064 0.43 11.2 0.6 1 21 624 645 624 646 0.95 12 20 0.047 3.2 8.4 3.9 3 23 656 677 654 677 0.95 13 20 0.00018 0.012 16.0 0.6 1 21 727 748 727 749 0.94 14 20 0.0019 0.13 12.8 3.1 1 23 757 780 757 780 0.97 15 20 0.013 0.86 10.2 1.5 1 21 815 836 815 837 0.94 16 20 0.24 16 6.2 2.7 1 23 845 868 845 868 0.94 17 20 0.00055 0.037 14.5 1.4 2 21 887 906 886 907 0.95 18 20 0.0026 0.18 12.4 2.3 3 23 917 937 915 937 0.98 19 20 0.0034 0.23 12.0 0.1 1 21 998 1018 998 1019 0.95 20 20 0.0081 0.55 10.8 1.9 1 23 1027 1050 1027 1050 0.96
Sequence Information
- Coding Sequence
- ATGATGAAGGTCACTCCACTCGCCCTTACATTTTTAAGTCTCAATCGCAGTTATAAAGTATTGAATAGTGAACATCAACCACCCTTCATCGAAACTTGCACAGCAAATGAATGTGGAAAGCCTTTGAAGTTTGCAAATGCTGATCAAAAATTTGACCGTCAGATGACAAGGAAACGATCATCCTTCGCCGAGTTAAGTGCAGCAGCTTATACAAATAAAGCTTCTGCGATTCTGGTTCCAAATCGAAGCATAATTTCACAGTTCGAGGAAACCAAAACTCAGCCAAAATTTTTCAGCTTCGATGGCAAAGCTACTTATGAAACTGGAGAAGCTTCAGAGCTCTCAGGCCTTGATCAAGATACTTACGCTCAGAATGTGATGCAGTCCACGACCTCTAGTTCTTTTTTCCCTTGCCCGAAGTGTGACCGCTGTTACAAGTATGATCGGTCCTTGAAACAACACTTAAGGCTTGGATGTGGGGTCAAGCCCAAGTTAGCTTGCTCATTGTGTCCGTTCAAGGCACGGGAAAAAATTACGCTAGAACGCCATTACATGGCTACACACTGTCGACCTAAAACATTTTACCCTGTGTGCCCTGCCCATCATTTTATCCTGTACTCTAAATTATTCTTTATACCCTTTGGAAAATCTCCCGTCTTGCCAAAATTGGAACAAGACTATCTCATGGTCGAAGATTTGATTGAACTGAGCAACCAGGAGCCTCGCCCGACCTCTCCGCACCAGCCAACTCTTGTGCGAACCACTCCCATCGTTCATTTCTGCCCAAATAATTGTGGGCGAAAGTATAAATGGAGAGACAGCCTACTAAAACATTTAAGATTTGAGTGTGGCAAAGAGCCCCAATTCATTTGTCCTCAATGCCCCTATAAAGCAAAATACAAAAACTCTCTGAGATATCATCTGGCCAATCGACATGGCTCTAAAAAAGAATCAGCCTTGCAGAAAAAGGAACATGAATATCTAATGGTTGAAGACTTGATTAAGTTTAGCGAATCAGAGACGTTCCCTCGTGTGCCGCAGACATCTAATGAATGCTCCACATCTTCTGGTCTTTTTTCTTGCCCAAATAACTGCGGGCGAAAATACAAATGGAGTTATAATGTTCAAAGACATTTGAATTTTGAATGTGGCAAAGAGCCCCAATTTCCGTGCCCCCATTGTCCCTATAAAGGAAAGTATAAAGGCAATTTGAAGTATCATCTAGCTAACAATCACGCTGCCTTTGAAAAAGCGCCTACCTTCTTAAAAGGCGAACGTTTGTTTGACTTAAGCGAGTCAGATCCTTTTCCGACGACTGTGATTCCGCCTGTTCCATTTCGTGCCTCTCATCCAGCGCTCTATTCTTGCCCCAACAACTGTGGGCGAAGTTATAGACAAAGTCGTAACGTTCATAGACATTTAAAATATGAGTGCGGCCAAGAACCACAATTCGTTTGTCCTCATTGTTCGTACAAAGGAAGGCACAAAGTTAGCCTGAGATACCATTTAGTCAAAGTGCATGCAATAAGAATAGAACATGGTGTACCAAGGACGAGACGGAATCTCATGAGGTCCGAAGATTTGATTGAAATGATCGACTCAGAACATTTACTGACTACTATGCCTCAACCAACAATGTCCCATGTCTCTCCGTCGCCTCATTCCTGCCCAAACAAATGTGGAAAAAGATATAAGTGGAAAGAAAGCCTTCTCAGACATTTGAAATTTGAATGTGGTCAAGAACCTAAGTTTACCTGTCCCCACTGTCCGTACAAAGGGAAACATAAAGATTTGATTGAATTGAGCGACTCTGAGCCTTTCCTGACCAATGCCCCCCAGGCGACTTTTTTGAATGCTGCTGCGACGCCCTATCCTTGCCCAAACAACTGTGGAAAAAGATATAAATGGAAATACAGCCTCCTTAGACATCTGAAATTTGAGTGTGGCCAAGAACCTAAGTTTGGCTGTCCTCACTGTGGTTACAAAGGGAAACATAAAGTCAGCCTGAAGTATCATTTATTCAAATCTCATGCCCCTAATAATGTACCCACCAATCTGGAAAAGGATCAAGGTTTTTTGAAATTCAAAAATCTGTTTGAATTAATCAAGACAGAACCACTTTCAACCTCGATGCCACAGTTTGCTGCAACGGATTTTGATCATTCAGTGCCTTTAACTTATCCTTGCCTCAATAATTGTGGGCGAAATTATACATCGAAGGATAGCCTCAAAAGACATCTAAGATACGAATGTGGCAAAGAGCCTCAGTTTAAGTGCCCTCAATGTCCGCACAAAGTCAAGCTAAAATTCAACCTGAAAGATCATATGCTAAGACGCCACGATGATGGGCGAAATTTCATGAGAGCCGAAGATTTGATTAAATTAACCGAATCAGATCCTTTGCTGCCGCAGCCAGCCTTCAGACGTGTTTCTCCAACGTCTCACTCATGCCCAAACAAATGCGGAAAAAGATACAAATGGAAAGACAGCCTCCTCAGACATCTAAAATTCGAGTGTGGTCAAGAGCCTCGGTTTATCTGCCCCCACTGTCCGTATAAAGCAAGACAGAAAGTTAGTCTGAGATGCCATTTAATCAAATTGCATGATCCACTTTATTATGAATTTGCTGATTATAGACCTAGGACAGATTTGAGATTGCAATGTTACAAATGCGGCCGGTATTACAAACGGAAGGATAGCTTAAGTAAACATGTTCGCTTCGAGTGCGGTGTTGAGCCAAGGTTTTGGTGCGAATACTGTCCGTATAAGGCCAAACAAAAAGTCACTCTGAAACATCATCTGCGAAGACATCTGAAGGAACAAAAAATATTGGCTGAACGTTTCAGAATGAGAAATGACTGGGATCGTAACTCACTCGACTTCGTTCAGAATCAAACGCCATCAAGAGCAAACAAATTTGCGTCGGTGACATCAACGTCGTTTCTTTCACATTGTCAGCCTCCTTCGTATACCGACAGGGGTCGTCTAGTTTTCCCATGTCCCAACTGTGAGCGCACATATACATGGAGTAAAAATCTCCAGGCTCATTTGAAACTGGAGTGTGGCAAAGAGCCTAATTTTTCGTGCCCCCGTTGTCCTTACAAAGCGTACAGAAAGTACTCCCTCAAGTACCATATAAGCAAAACTCACAATGATTACCAAGCAAACCTCTAAGCTTCAAAGTTGATGAAAGTCTCTGTCTTGCAAATGTGTTTTGGAAGAACTTTGGTCGCGGTTGCTTTACTTCTTCTTTTCCTCTCCTTTTTTTCAAATGTCCGCCCTCATTTTGCCCTCTGCTAACTCAAGTCCTACTGAAACCCCATTATTTGCCACAGTCTTGTTTTATCGTTTTATCCTCCAGCTTTATTATCTCTTCGTATCATTAAAATACTGATGAAAAAGAAGAAGAAAGAAAAAAAGTTAATAATTTGAAAGGTGTGCTATTAATTTTTTTTTCCCTGAGAGATTTTGTGCTCTAATACAGCTAGAGAATCGCATTAAAAAGACAACAAAGACAACGAGAACCTATTACCGCCAAAAAGAAAAATCAAAAATCGAAAAAATGAATAAATAGAGGGATAACTGAACGTATTAAAAGTACTCATGAGCTAGGACGTCATCTAACCGTTGTTTGAACATCAACGACTCTTCGACGACTTATTTTATTTTAAGAGTAATTTTAGATATTTTCAGCTTGCTTGCTGTTTTTGTCGTGCCTGCTCTGTCGAACTTTAAAATTCAACTCACTTATTCGTTTAGTAAGAAGTCCCTTGCAAACTTTTTATTTTGTAATTTCTTAAACTGTGCCTTTCGTCATTAAACATGACGCTCATTTATACTCGTACTATTCATGCAACATTTCAAAAACTCGTACGCAAAAGCTTGGTTATAAGTTTCTAAAGTGAAAACCTTTGTTGTCAACTGAAATCATTCTACTCTGAATAGAATTTGTGGTTATTTTGTAACATTTTATCGTACGGCTGTTGGAGTTCCCAAACCATATTTGGTTGTTTGTTGTATGCTTCCATTTTGCCTTTTTTGAACTGCAATAAAAAGCAAGAGATACAGTGAAGTATTTGTTCAGTTATTTCATTATACGCTACTCCGTGGAAAAGGTATACGAATCCCTCACTTGATGATCGGGGCTGTTTCTTACGTACACCCTAGACCAAAACTACTTTACGCATATTCTCTGTACGGTCTATTGGTCCA
- Protein Sequence
- MMKVTPLALTFLSLNRSYKVLNSEHQPPFIETCTANECGKPLKFANADQKFDRQMTRKRSSFAELSAAAYTNKASAILVPNRSIISQFEETKTQPKFFSFDGKATYETGEASELSGLDQDTYAQNVMQSTTSSSFFPCPKCDRCYKYDRSLKQHLRLGCGVKPKLACSLCPFKAREKITLERHYMATHCRPKTFYPVCPAHHFILYSKLFFIPFGKSPVLPKLEQDYLMVEDLIELSNQEPRPTSPHQPTLVRTTPIVHFCPNNCGRKYKWRDSLLKHLRFECGKEPQFICPQCPYKAKYKNSLRYHLANRHGSKKESALQKKEHEYLMVEDLIKFSESETFPRVPQTSNECSTSSGLFSCPNNCGRKYKWSYNVQRHLNFECGKEPQFPCPHCPYKGKYKGNLKYHLANNHAAFEKAPTFLKGERLFDLSESDPFPTTVIPPVPFRASHPALYSCPNNCGRSYRQSRNVHRHLKYECGQEPQFVCPHCSYKGRHKVSLRYHLVKVHAIRIEHGVPRTRRNLMRSEDLIEMIDSEHLLTTMPQPTMSHVSPSPHSCPNKCGKRYKWKESLLRHLKFECGQEPKFTCPHCPYKGKHKDLIELSDSEPFLTNAPQATFLNAAATPYPCPNNCGKRYKWKYSLLRHLKFECGQEPKFGCPHCGYKGKHKVSLKYHLFKSHAPNNVPTNLEKDQGFLKFKNLFELIKTEPLSTSMPQFAATDFDHSVPLTYPCLNNCGRNYTSKDSLKRHLRYECGKEPQFKCPQCPHKVKLKFNLKDHMLRRHDDGRNFMRAEDLIKLTESDPLLPQPAFRRVSPTSHSCPNKCGKRYKWKDSLLRHLKFECGQEPRFICPHCPYKARQKVSLRCHLIKLHDPLYYEFADYRPRTDLRLQCYKCGRYYKRKDSLSKHVRFECGVEPRFWCEYCPYKAKQKVTLKHHLRRHLKEQKILAERFRMRNDWDRNSLDFVQNQTPSRANKFASVTSTSFLSHCQPPSYTDRGRLVFPCPNCERTYTWSKNLQAHLKLECGKEPNFSCPRCPYKAYRKYSLKYHISKTHNDYQANL*ASKLMKVSVLQMCFGRTLVAVALLLLFLSFFSNVRPHFALC*LKSY*NPIICHSLVLSFYPPALLSLRIIKILMKKKKKEKKLII*KVCY*FFFP*EILCSNTARESH*KDNKDNENLLPPKRKIKNRKNE*IEG*LNVLKVLMS*DVI*PLFEHQRLFDDLFYFKSNFRYFQLACCFCRACSVEL*NSTHLFV**EVPCKLFIL*FLKLCLSSLNMTLIYTRTIHATFQKLVRKSLVISF*SENLCCQLKSFYSE*NLWLFCNILSYGCWSSQTIFGCLLYASILPFLNCNKKQEIQ*SICSVISLYATPWKRYTNPSLDDRGCFLRTP*TKTTLRIFSVRSIGP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -