Tvap010972.1
Basic Information
- Insect
- Trialeurodes vaporariorum
- Gene Symbol
- lola
- Assembly
- GCA_011764245.1
- Location
- HIC:46364374-46392329[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 9.5e-06 0.00064 20.1 1.6 1 21 45 65 45 66 0.97 2 12 0.00028 0.019 15.4 4.1 1 23 74 97 74 97 0.96 3 12 8.6e-05 0.0059 17.0 0.5 3 21 142 160 140 161 0.94 4 12 3.9e-05 0.0026 18.1 1.0 1 23 169 192 169 192 0.96 5 12 0.0087 0.59 10.7 3.1 1 21 215 235 215 236 0.96 6 12 0.0025 0.17 12.5 8.5 1 23 244 267 244 267 0.97 7 12 3.4e-05 0.0023 18.3 1.6 1 21 296 316 296 317 0.96 8 12 3.3e-06 0.00023 21.5 0.6 1 23 325 348 325 348 0.97 9 12 0.00053 0.036 14.6 2.3 1 21 381 401 381 402 0.96 10 12 3.7 2.5e+02 2.4 5.5 1 23 410 433 410 433 0.93 11 12 0.00047 0.032 14.7 1.6 1 19 460 478 460 480 0.96 12 12 1.3e-05 0.00086 19.6 3.2 1 23 490 513 490 513 0.97
Sequence Information
- Coding Sequence
- ATGTTCATCTCCTTCTGTCTTATCCCCGGAGGATTGGAACCGCTCGTGGAATTATTCCGTGATCCGAATCTGGATCTCATGACAGGGAACTTGGAATCACCGGCTCGAGCCTCGGCCTACCCGACCGGCGTGTACCATTGTCCCACCTGCGGAAAAGGATACAACTACAAGACATCCCTAATGCGTCACATGCGATTCGAGTGCGGCCAAGCGCCCAAATTTGTCTGTCCCTTCTGCGACCATCGGACCAAACACAAATCCAGTCTCATCAACCATATCAGTTCCCGCCATAAACAAAATATCCCGCCGGGCAATTTGTTTAGATTTGTAGCCGAAGAGATTGGTACCTGCAATTCACAAGCCCTTGTAATTTGTCGCAATTTGTTAAGATTAGTAGCCAAAGAGATTGGAGCCTCTGTAATTTGTTGGAATTGTAGCAAAGTCTATCGTCACCCCTCATCATTAAATCGGCATCTAAAATTCGAGTGTGGAAAAGATCCTCGATTTAAATGTAGCATATGTAATTACGTATCAAAGCAGAAAATTAATCTAAAGACGCATCTAATTGTTAAGCATAAGATTCAGCTATCTCCTGCTTTTGGCACGTCATTTCGTCGACAGCGGAACAGTAACGAGAATCAATTTCAGTGTTTCCAGTGTTTGAGGAAGTATCGATATAAAGTCACCCTTCGGAGACACCTAAAATACGAGTGCGGAAAAACGCCCCAATTCCACTGCCCCCACTGCCAGTATGAAACGAAACGAAAATGCAACTTGAAAACTCATATGATCATGAAACATTTTCAGAACAGCAAAGATCATTCCGCGTTCGATCCCTATTCGACTTTGCCACGATCGCGGCCTCAGAATCAAGAAGTCGATCTCTATTACTGTCCAAAATGCGGCCGGAAATACCGCTATCAGCTGACGTTGAATAGGCATTTGAGGTATGAATGCGGGAAAGCGCCACAATTCGTGTGCCCGTTCTGTCCGTACGTCTCCAAACAGAAGGGAAACCTCAAAGTTCATATGCGCTACCGGCATCAGATAGGAAAGGATCCGAATATTAATTTCAAACCGCTTGTTTCCATTTCAGACGCACGTTACAAGCCTTACTCTCGCCAATCAGATTTAAACAGGTTCGAATGTTCCGTGTGCAATAGGAAATACCAACATCTGATGACTTTAAGGAGGCATATGAGGTACGAATGCGGGAAAGAGCCTCAGTTCCAATGTCCCTTCTGTCCTGTTCGAATGAAGCATAAAACTAACATCAACCAACACTGCCGATCCAAGCATGGGGTTTTCAATGGGTACATGCCGTGGGTGGGTTGGGATCCGAACCCGAAGTACGTGCGGCAAACAAGTCAGAACCAGTATAGCTGTCAGCACTGTGGTAAAAGATACCGATGGAAAAGCACTCTCAAACGCCATGAGGTTTTCGAATGTGGCGGGAAAGAACCTGCCCACCAATGTCCACACTGTGATTATCGAGCGAAGCAAAGTGGCAATCTCCGAGTTCACATTCGCAAGTACCACTCAAGCTCAAGTGCTGTTGTTCCTTTTGTCCCTGTCCACCCAGCCAACAATACTACCTTAGATTTGCATGTTGAAAAGAAAACAGCTTTTTCTTTCTTTTTAAAATTCTTCTACTTGATGATCGCCTCAAGTTTTACTCTCTCTTTATCGGCAAATTTCAGTGAAATTCAATCATTATTAGCTCAAACGCTCAGAAACGACATTCATTTTTGTTTTGAAATGCTCTTTAATAAGTTACAAGAGCCTTGTCTTCAAATTTACTGA
- Protein Sequence
- MFISFCLIPGGLEPLVELFRDPNLDLMTGNLESPARASAYPTGVYHCPTCGKGYNYKTSLMRHMRFECGQAPKFVCPFCDHRTKHKSSLINHISSRHKQNIPPGNLFRFVAEEIGTCNSQALVICRNLLRLVAKEIGASVICWNCSKVYRHPSSLNRHLKFECGKDPRFKCSICNYVSKQKINLKTHLIVKHKIQLSPAFGTSFRRQRNSNENQFQCFQCLRKYRYKVTLRRHLKYECGKTPQFHCPHCQYETKRKCNLKTHMIMKHFQNSKDHSAFDPYSTLPRSRPQNQEVDLYYCPKCGRKYRYQLTLNRHLRYECGKAPQFVCPFCPYVSKQKGNLKVHMRYRHQIGKDPNINFKPLVSISDARYKPYSRQSDLNRFECSVCNRKYQHLMTLRRHMRYECGKEPQFQCPFCPVRMKHKTNINQHCRSKHGVFNGYMPWVGWDPNPKYVRQTSQNQYSCQHCGKRYRWKSTLKRHEVFECGGKEPAHQCPHCDYRAKQSGNLRVHIRKYHSSSSAVVPFVPVHPANNTTLDLHVEKKTAFSFFLKFFYLMIASSFTLSLSANFSEIQSLLAQTLRNDIHFCFEMLFNKLQEPCLQIY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -