Tvap014985.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Trialeurodes vaporariorum
Gene Symbol
-
Assembly
GCA_011764245.1
Location
HIC:14683075-14685585[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 14 0.81 55 4.5 0.0 6 20 215 229 213 231 0.91
2 14 0.00023 0.016 15.7 0.5 1 23 238 260 238 260 0.97
3 14 9.1e-06 0.00062 20.1 3.3 1 23 266 288 266 288 0.99
4 14 0.00095 0.064 13.8 6.8 1 23 294 316 294 316 0.99
5 14 0.00071 0.048 14.2 4.2 1 23 322 345 322 345 0.96
6 14 0.031 2.1 9.0 1.1 1 23 351 373 351 373 0.98
7 14 6.9e-05 0.0047 17.3 1.4 1 23 379 401 379 401 0.97
8 14 0.00028 0.019 15.4 0.1 2 22 645 665 644 665 0.95
9 14 4.6e-05 0.0031 17.9 4.3 1 23 672 694 672 694 0.98
10 14 1.6e-05 0.0011 19.4 2.0 1 23 700 722 700 722 0.97
11 14 0.0038 0.26 11.9 9.9 1 23 728 750 728 750 0.99
12 14 1.5e-05 0.001 19.4 0.5 1 23 756 778 756 778 0.98
13 14 0.01 0.7 10.5 1.7 2 23 785 807 784 807 0.96
14 14 0.38 25 5.6 2.3 1 15 813 827 813 829 0.93

Sequence Information

Coding Sequence
ATGTCAGGATCCAACTTTTTCCCTGAGTTTACAATAAAGACAGAGAAGGAACCTCTCGAAGAAGAGGATGCTGAAATAACAGAACACTCAACTAACCTGCAGGAGGAGGAGCAGGGGCTACCTGACAATTTAACTGACTGTTGCAAAATAAATGACAAAGATGTAGAACTGCAAAGCATTCAATTCGTGTCGATGAGTGTAAAATCAGAAGAATACTGGAACGAATCTGAGGCAACTTTCGAGTCTCCGTGCAATATTTCTGCGAATATGCCAATACAGGAAGCAAATTGTATGATCCGTGGCTACAATGAAAACAAGAATGTTACTTCTGTTTCTCAAAGTGTGAGTATCAATTCTTTTAGGGATCACCCAATAAAACCGGAGGCCAAACTTTGTTGTGAAGAAGACACTGGAAGTGTGGATGAATTTGCGGAAGACACTAGTGGCCTTGAAACAAATGACATGGAACCAATGCAAGATTTAGGAGGGACAAACTCCATATCAATCACTGTAAGTGAGAAACAGCAAAGCAAATTGAATAAACTGAGCAGAACATTGAAAGTTGAACATGTTTACGATGGAACTACAACACAAAAAGAGCAAAATGCGAGAAATGGAACGGAATCAATTGTATCTGCTTTCTGCAGTGCAACATTCACTAAAAGAGTTCAACTTAGTGCTCATATTGGAACACGATCTGGTAAAAGAATGCATGAATGTGCTGACTGCAATGCCAAATTTTCTGTAAAAGGCTCTTTGATAAACCACACCGAAACTCATACCTGTGAAAAACCTTTTACATGTACTCACTGCAATTCAACATTTATTTTGAAAGCCGCATTAAAACGTCACATGAGGACTCATACAGGTAAAGAAGCTTTTCAATGCTTTCACTGCAATGCAAAGTTTTTTAGGAAAGAACATCTGGATTCTCATATCAAGACTCACACATGTGAAACACCTTTTCCTTGCACTCACTGCAATTCAAAATTTTCTAGGAAAGACCTTCTTAATCTTCATCATATCAGGATTCACACTGGTGAAAAATCTTTTCAATGCACTCAATGTAACGCAAAATTTCTTGAGAAAGAAAATCTTATTTTTCATATCAGGACTCACACTGGTGAAAAACCTTTTCCATGTGCTCACTGCAATGCAAAATTCTCTTCGAAACAAAGTCTTACTTCTCATGTCCGGGCTCACATTAGTGAAAAAACTTCTCGAAGTACTCTTCAATTGATGAAATCGCACAAAAAGAAGGCGTACCACATCACAAATGAGCACAATTCTGAGCCAAATGCTTCAAACTTTTCGAGTGACGTCAATTTTCTCAACATTAAAACAGAGCCTGAGAATGACCCTCTATGTGATGAGGTGGCTGGAGAGACACCAGTATTTATACAGGCGATGGCTGATAATTTGAATGTTTCAAGAGAAACAGACAACAAAGATACTGAATTCGGCCATTTCCAGTTTACAGAACCTGTAAACGTGAAATTAGAAGCGGAGCAGAATGTCGAAGCGATGACCCACCAATCTATCGGCAATGAGTGTATAAGTTTGCCCGGACAGCAAGAAAATTTTTTGCGCCTTGACAACGAGGAAACCAGAATGCTTCCATTTGCCTCTCTCAATGAGAATCCTGATCTTGTTTTAGGTTCATCAATGAAACACGAAGCTAGTTCTAATTGTGAAACTAGCTCTGGAAACGCCGTTGAAGTCAAGAGAGAGACCATATTCCATGAAGAAAATCAAAATTTCAAGGCGGAACCATTTGTTGAATCCGGAAACTTCACTTCTTTTTCAGAGAATGAAATTAAAGAGGGCATACTTAATGAGACAATAATATTAAAATCGGATGCTGAAAATGAAAGCGTTTTAGGTATAAATCAAGAAAGCATCATGAATACACGAAAAGTAAAGAAACTTTTAACTTGCGAGTACTGTAATAAAACGTTTTCAGGAATGCAAGGACTGATTATTCATATCAGGACATATACTGGTGAAAGACAATATGTTTGTCATCACTGCAATGCGAAATTTGCCACCAAGAACACTCTCAGATTACACATTATGAGACATACTGGTGAAATGCCTTTTGAATGTGGCTACTGCAGTAAAAAATTTAGGCGTAAATACGCTTTAACGCTTCATACTACAGTACATACTGGAATACAACTTTATAAATGCTCCTTGTGCGATAAAAAGTTTAAAAGGAATCACTATCTAAAATGTCATCTAAAGAAGCATGACAATCCAAAACCTTTTTCATGCGCTTTGTGCAATAGAGGATTCGGTCGGAGCTCCGATCTGAGAGTGCATCTCAAGAGACATGACGGTGAAGAACCTAACAAATGCCCGCTGTGCGATAAAAAGTATTTCTTGAAGCGTGAGCTCGATCATCATTTAATAATGTCGCATGATGATCTCAAACCTTTTCCATGTCCCATGTGCAGTAGAAAATATGCTACGAAATCCCATAGGTGCATCTCAGGGTACATTCTGATGTAG
Protein Sequence
MSGSNFFPEFTIKTEKEPLEEEDAEITEHSTNLQEEEQGLPDNLTDCCKINDKDVELQSIQFVSMSVKSEEYWNESEATFESPCNISANMPIQEANCMIRGYNENKNVTSVSQSVSINSFRDHPIKPEAKLCCEEDTGSVDEFAEDTSGLETNDMEPMQDLGGTNSISITVSEKQQSKLNKLSRTLKVEHVYDGTTTQKEQNARNGTESIVSAFCSATFTKRVQLSAHIGTRSGKRMHECADCNAKFSVKGSLINHTETHTCEKPFTCTHCNSTFILKAALKRHMRTHTGKEAFQCFHCNAKFFRKEHLDSHIKTHTCETPFPCTHCNSKFSRKDLLNLHHIRIHTGEKSFQCTQCNAKFLEKENLIFHIRTHTGEKPFPCAHCNAKFSSKQSLTSHVRAHISEKTSRSTLQLMKSHKKKAYHITNEHNSEPNASNFSSDVNFLNIKTEPENDPLCDEVAGETPVFIQAMADNLNVSRETDNKDTEFGHFQFTEPVNVKLEAEQNVEAMTHQSIGNECISLPGQQENFLRLDNEETRMLPFASLNENPDLVLGSSMKHEASSNCETSSGNAVEVKRETIFHEENQNFKAEPFVESGNFTSFSENEIKEGILNETIILKSDAENESVLGINQESIMNTRKVKKLLTCEYCNKTFSGMQGLIIHIRTYTGERQYVCHHCNAKFATKNTLRLHIMRHTGEMPFECGYCSKKFRRKYALTLHTTVHTGIQLYKCSLCDKKFKRNHYLKCHLKKHDNPKPFSCALCNRGFGRSSDLRVHLKRHDGEEPNKCPLCDKKYFLKRELDHHLIMSHDDLKPFPCPMCSRKYATKSHRCISGYILM

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-