Tvap004171.1
Basic Information
- Insect
- Trialeurodes vaporariorum
- Gene Symbol
- -
- Assembly
- GCA_011764245.1
- Location
- HIC:90799295-90803542[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 5.9e-05 0.004 17.5 0.6 3 23 615 636 615 636 0.98 2 12 1.5e-05 0.001 19.4 6.0 1 23 1033 1055 1033 1055 0.99 3 12 0.78 53 4.6 0.0 1 19 1060 1078 1060 1081 0.93 4 12 2.9e-05 0.002 18.5 0.5 1 23 1116 1138 1116 1138 0.98 5 12 0.001 0.068 13.7 5.7 1 23 1144 1166 1144 1166 0.98 6 12 0.00032 0.022 15.2 0.7 2 23 1205 1226 1204 1226 0.96 7 12 6.5e-08 4.4e-06 26.9 2.2 1 23 1232 1254 1232 1254 0.98 8 12 2.8e-05 0.0019 18.6 2.1 1 23 1261 1283 1261 1283 0.97 9 12 0.13 9.1 7.0 1.5 1 23 1290 1312 1290 1312 0.95 10 12 0.024 1.7 9.3 3.1 1 23 1317 1339 1317 1339 0.97 11 12 5.1e-06 0.00034 20.9 0.3 2 23 1346 1367 1345 1367 0.97 12 12 0.00014 0.0095 16.4 2.2 1 23 1372 1394 1372 1394 0.98
Sequence Information
- Coding Sequence
- ATGCAAGTAATATCAAAGGAGTCATCATTAGCCAAGCATCTGCGGAGGCAGATCCCAAACAACGATGGATCCATTGAATCAAAAATGATTCAGTATGCTTTTTTTGAAAATTTAGAAGTTACTCCTACCAAGCATCTGAGGAGGCAGATCCCAAACAACGATGAATCCATTGAATCTAAAATGGTTAAGTATGCATTTCTTGAAAATTTAGAACCTATTCCTATTGCCTTCAAGGCGGAGAGTACTGTGGGTGGAGGTTACAAAAAAATGTGTAAGAGTGTAGATTCAAAAAATGATAGACATACTCGAATTCCATTAGACAAGTCAAAAGAAATCTCAAGGAAAAATAAATTAATCAAAGCTGAAAAGAATCACAACTTTCATACAGAAGATGGAGGAAAGATTTCTTCCAAAAATAAGTCCAATGAAATCAAAGATAGTACTCAAGGGCTCTCAGAAAACCAAACAATTCATCCAATTACATTACATAGGAAGGGAAGGAGTTCTAGTGAAACCAAGAAAAGTAACAATGTGTCCTCAGAAAATCCAGAAATTATAGAAATTTTTCTGGATGACGAGGAAAGCATGTCGGAAAATAAGTCTCAGAAAATAGGAATGAATGAGAATGCCTTCAAGGCAGAGAGTACTGTGGGTGGAGGTTACAAAAAAATGTGTCAGATTGTAGATTCAAAAAATGATAGACATACTCGGATTCTATTAGACAAGTCAAAAGAAATCTCAAGGAAAAATAAATTAATCAAAGCTGAAAAGAATCACAACTTTCATACAGAAGATGGAGGAAAGATTTCTTCCAAAAATAAGTCCAATGAAATCAAAGATTGTACTCAAGGGCTCTCAGAAAACCAAACAATTCTTCCAATTACATTACATAGGAAGGGAAGAAGTTCTAGTGAAACCAAGAAAAGTAACAATGTGTCCTCAGAAAATCCAGAAATTATAGACATTTTTCTGGATGACGAGGAAAGCATGTCGGAAAATAAGTCTCAGAAAATAGGAATGAATGAGAATGCCTTCAAGGCAGAGAGTACTGTGGGTGGAGGTTACAAAAAATTGTGTAAGATTGTAGATTCAAAAAATGATAGACATACTCGGATTCCATTAGACAAGTCAAAAGAAATCTCAAGGAAAAATAAATTAATCAAAGCTGAAAAGAATCACAACTTTCATACAGAAGATGGAGGAAAGATTTCTTCCAAAAATAAGTCCAATGAAATCAAAGATTGTACTCAAGGGCTCTCAGAAAACCAAACAATTCTTCCAATCACATTACATAAGAAGGGAAGGAGTTCTAGTGAAACCAAGAAAAGTAACAATGTGTCCTCAGAAAATCCAGAAATTATAGACATTTTTCTGGATGACGAGGAAAGCATGTCGGAAAATAAGTCTCAGAAAATAGGAATGAATGAGAATGCCTTCAAGGCAGAGAGTACTGTGGGTGGAGGTTACAAAAAATTGTGTAAGATTGTAGATTCAAAAAATGATAGACATACTCGGATTCCATTAGACAAGTCAAAAGAAATCTCAAGGAAAAATAAATTAATCAAAGCTGAAAAGAATCACAACTTTCATACAGAAGATGGAGGAAAGATTTCTTCCAAAAATAAGTCCAATGAAATCAAAGATTGTACTCAAGGGCTCTCAGAAAACCAAACAATTCTTCCAATCACATTACATAAGAAGGGAAGGAGTTCTAGTGAAACCAAGAAAAGTAACAATGTGTCCTCAGAAAATCCAGAAATTATAGAAATTTTTCTGGATGACGAGGAAAGCATGTCGGAAAATAAGTCTCAGAAAATAGGGAAGAATGAGAAAATATTGGGTTGTGACTACTGCGATAAGCAGTTTGAAACGAAATCTGGCTTATCAAACCATTTGGAAACTCTCCATTTCATTCAAGCAATCACTCCAATTAGAGTTTACGCAAATGAAACGGAAGATTGTAAAAACGCTTCGTTGAAATCGTCCATCATGTTGGAAAATGTGGCTCTCAACAATAGTTCAAGTGAAACTCAAGAGAATGGTAATGTTTCCTTTCAAAATCAAAAAGTTATTCCGATTCCATCTGTTGAAATGCCATGGCTACCAAGATGGACAGATGAAGGAAATGAAACTGAAAATTGTGAAAATCCCCTTCCAACGAATCAAGAAATCACTCAGATTTCTTCTCTGAAGGTTAAAGAGACAAGCAAAAATGAACTAGATGAAACGGAAGATTGTAAAAACGCTTCGTTGAAATCGTACATCATGTTGGAAAATGTGGCTCTCAACAATAGTTCAAGTGAAACTCAAGAGAATGGTAATGTTTCCTTTCAAAATCAAAAAGTTATTCCGATTCCATCTGTTGAAATGTCATGGCTACCAAGATGGATAGATGAAGGAAATGAAACTGAAAATTGTGAAAATCCCCTTCCAACGAATCAAGAAATCACTCAGATTTCTTCTCTGGAGGTTAAAAAGACAAGCAAAAATGAACTAGATGAAACTGAAGATTGTGAGAATTCCTTCCGAAAAAATCAAGATATTGCTCTTTTTTCATTCATCATGACAGGAAAAAGTGAAACTGAATTAAATGAAACAAAGGAAAGTGGGCCAGTATTCCTAGCAACTGAAGTTACTGAACCTATTTCATTCAGCTCAATGGAAAGATCTGTAATTGAAAATGAAGCAAATAAAACTGAAAGTAATAACTCTGTATGTCTAAAAGATCCAGAAATTGTTCCAATCTCATCAGACAGCATGGATACATCAATCCTAAATAAAATTTCTATAATCAATGAGGAGAAGAATTTGGATCCAAAATATAAAAAAGATTTTCCGATAACTTTAGGCAAGACAAAAGAGATCTCAAAGGAAAAGAAATTAAATGAAGCTAAAAAACGTCTGAATTTCCAAACTGAAGATCAAGGAATGATTTCGAAATCAGTGAGCAAGACAAAAAAGATTTCGTCCAAAAAAAAGTCTAATAAAATCAAGCAATCAAAAAAAAAAGATCATGAAGCAGTCATGAAAACTTCGGCCGAAAAATTTGCTGATGAATCGAACAGCAAAAACAAAAAAAGAAACAATGAAACAATTTACACCTGTGATAACTGTAATAAGCAATTTAAAAGGAAAACTTGCTTAACAAACCATATGAAAATTCATTTTCCAGCAGTTTACACTTGCTTTGCTTGTGGTCAGGAGTTTGACAAGAGATGGGGCCTGTTAGATCATTCAATAATTTGCTTAAAACGCAGTAAAGAAGAATGTAAAATTGCAATTTTAAAATTTAATAAAGCATTAAATAGAAAAGAACAGAGAAGAAAAATGAAACAGGTTAGGATCTACAAATGTGATATTTGTGACGAAGAATTTGACCGGAACGTTAAGTTGAAAAAACATTCGGCCACACATCCTAGACTTTTCCTATTTAAATGCAAATTTTGTGAGATGACCTTTTCCTATAAATGTGAGTTAAGGAAACATACACTGATTCATATGGGCTCTGAATCAATCAATAAATCAGAAAATAGTTGTGAATCATCTAATGAAATGAAAAGGATTTTGGAAGAAGCAAAACTACAAAAAAAGGAGAAAGGAGTAGATTTTCTTTCTTGCAGTGTTTGCTCGAAACAGTTCACAAGACTTAGCAATTTTGGAATCCACATAAACCAACATTTGAAACTTTTAAAATACAACTGTAAGCATTGTGAGAAGGTTTTTACTGACCCTTCAAGCTTAAGGAGGCATATTTTAACGCATTTTGATGCCAACAAAAATCATGAGTGTCCTCAATGTTCTAAGAAGTTTCCGGGGAAATATCTTTTAAAGCGGCATATGAGCTTACACAATGAAGAATTGCGTCGTTTTATGTGCAATTTGTGTGAATTTAGGGCTTTTACATTGAGTGATTTGATACACCATAACCGCATTCACACAGCTCCTTCTTTCGCCTGTGATGAATGCTCATTAGCATTTCACCTTAAGTGTGATTTAGAAAAACACAAGAGAATACATACAGGAATTAGAGACTTGGTTTGTGAAATCTGTGAGCTGAAATTCAATAGTCCTTATAATCTGAAGAGGCATCTTAAGATTCATGATTCCTCTAATTTTACTTGCAAATTTTGTGGTGCTCGTTATTCTACTAGTGCAACCTATGAAAAACATCTAAAGAAACATACAGCTCAGTCAACAAAGAAAGTTGATGAACGAGGCCTTCCTGATGCATTGACAATTTACCAATAG
- Protein Sequence
- MQVISKESSLAKHLRRQIPNNDGSIESKMIQYAFFENLEVTPTKHLRRQIPNNDESIESKMVKYAFLENLEPIPIAFKAESTVGGGYKKMCKSVDSKNDRHTRIPLDKSKEISRKNKLIKAEKNHNFHTEDGGKISSKNKSNEIKDSTQGLSENQTIHPITLHRKGRSSSETKKSNNVSSENPEIIEIFLDDEESMSENKSQKIGMNENAFKAESTVGGGYKKMCQIVDSKNDRHTRILLDKSKEISRKNKLIKAEKNHNFHTEDGGKISSKNKSNEIKDCTQGLSENQTILPITLHRKGRSSSETKKSNNVSSENPEIIDIFLDDEESMSENKSQKIGMNENAFKAESTVGGGYKKLCKIVDSKNDRHTRIPLDKSKEISRKNKLIKAEKNHNFHTEDGGKISSKNKSNEIKDCTQGLSENQTILPITLHKKGRSSSETKKSNNVSSENPEIIDIFLDDEESMSENKSQKIGMNENAFKAESTVGGGYKKLCKIVDSKNDRHTRIPLDKSKEISRKNKLIKAEKNHNFHTEDGGKISSKNKSNEIKDCTQGLSENQTILPITLHKKGRSSSETKKSNNVSSENPEIIEIFLDDEESMSENKSQKIGKNEKILGCDYCDKQFETKSGLSNHLETLHFIQAITPIRVYANETEDCKNASLKSSIMLENVALNNSSSETQENGNVSFQNQKVIPIPSVEMPWLPRWTDEGNETENCENPLPTNQEITQISSLKVKETSKNELDETEDCKNASLKSYIMLENVALNNSSSETQENGNVSFQNQKVIPIPSVEMSWLPRWIDEGNETENCENPLPTNQEITQISSLEVKKTSKNELDETEDCENSFRKNQDIALFSFIMTGKSETELNETKESGPVFLATEVTEPISFSSMERSVIENEANKTESNNSVCLKDPEIVPISSDSMDTSILNKISIINEEKNLDPKYKKDFPITLGKTKEISKEKKLNEAKKRLNFQTEDQGMISKSVSKTKKISSKKKSNKIKQSKKKDHEAVMKTSAEKFADESNSKNKKRNNETIYTCDNCNKQFKRKTCLTNHMKIHFPAVYTCFACGQEFDKRWGLLDHSIICLKRSKEECKIAILKFNKALNRKEQRRKMKQVRIYKCDICDEEFDRNVKLKKHSATHPRLFLFKCKFCEMTFSYKCELRKHTLIHMGSESINKSENSCESSNEMKRILEEAKLQKKEKGVDFLSCSVCSKQFTRLSNFGIHINQHLKLLKYNCKHCEKVFTDPSSLRRHILTHFDANKNHECPQCSKKFPGKYLLKRHMSLHNEELRRFMCNLCEFRAFTLSDLIHHNRIHTAPSFACDECSLAFHLKCDLEKHKRIHTGIRDLVCEICELKFNSPYNLKRHLKIHDSSNFTCKFCGARYSTSATYEKHLKKHTAQSTKKVDERGLPDALTIYQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -