Tvap008959.1
Basic Information
- Insect
- Trialeurodes vaporariorum
- Gene Symbol
- -
- Assembly
- GCA_011764245.1
- Location
- HIC:8763720-8772700[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.062 4.2 8.0 0.9 2 20 266 284 265 286 0.94 2 14 3.7 2.5e+02 2.4 0.5 1 10 293 302 293 315 0.70 3 14 0.0001 0.0068 16.8 0.3 1 23 321 343 321 343 0.98 4 14 0.001 0.069 13.7 2.8 1 23 351 373 351 373 0.96 5 14 0.068 4.6 7.9 1.4 2 23 381 402 380 402 0.96 6 14 1.5e-05 0.001 19.4 2.0 2 23 408 429 407 429 0.96 7 14 0.00034 0.023 15.2 1.6 1 23 435 457 435 457 0.98 8 14 0.00089 0.06 13.8 5.1 1 23 463 485 463 485 0.97 9 14 0.0032 0.22 12.1 1.7 2 23 492 513 491 513 0.95 10 14 1.5e-05 0.001 19.4 0.3 1 23 519 542 519 542 0.92 11 14 0.034 2.3 8.9 5.3 1 23 549 571 549 571 0.97 12 14 1.3e-05 0.00086 19.7 0.1 1 23 577 600 577 600 0.96 13 14 2.7e-06 0.00018 21.8 2.8 1 23 610 633 610 633 0.95 14 14 4.4e-06 0.0003 21.1 3.8 1 23 640 662 640 663 0.96
Sequence Information
- Coding Sequence
- ATTACTTTCAGATGAAGAACTCGTTTTATTGTTGTTTACAATTGGAATAACCTCAAATTAATTGGGGTTACGGAGGAAGTAAATAGGTAAATAGAACATAATTTCTATCCGCGACTAAACTTTTTCTCCTTCTTAATTTCATAGTTTCTCAATCTATTACAGCTTCTATAGTCAGTCGAAGGTTTGACCCTTTATCAGCTAATCTGCTGGATTGAAAATTCAGTATGTTGTTCGCAGTTCTACCCATTTTTTGTGTGTTTGTGGGCAGTTATAATTTCGCAGATTCTGCGCTATCAACTCTTAGAGATGTATAACTATTTGTTCCATTATATTCTAAATGTTTACCACTAGTTTGCTAGAAACCAGTTTTCCCCAAAATGAGTTTTTGTTCCTGACACTCTTTGGAACCATTGTTCATCGACTCAACTGTTTTCACGAAAAACCTGTCAACGTTCTGATCAGCAGTAGCTAGTTTTGTGAGCTAAAACAGGCAAGATGGCATGCCTTGAAGAGCCTGAAATTGGAATGTCTCAAATTAAGGACGAAGGAGATCAAAATATTGATGAGGTTGCCCAAGATGGATTGTTTGACAAATCAACTGATGAGGCTGATAATACCACTGGTCCAGAAATGGTGTTGATCAAAGCTGAGCTGGATGCAATGAGTGACGTTGACTCGAATGCTTCAGATTCAGTCCCTGATGAGGATTCAACCTTTCAAAATTTATCAAACGAGACCATTACCTCCAACAGCCAAATCCTATCTTCAGATAACGCAGAAAATATAAAAGCATCCTACTGTCACAAATGTCAAACAGATTTTGGATCTCCAAAGCGGCTCGCGAAACATTTAGAGTTTTATGTACGACAAGCTCCTTTTGCTTGTGTAAATTGTCACAAAGCGTTCCTCAAGGATGAAATTCTTCGAGAGCACTCACGTGTCCATGTAGCGGAGAGAATGTTCAGGTGCAAAATTTGTCCATTTTCTTTTGATACTGATCAAGAACTAGCTCAACATCTGGAAACCCATAATGTAGAAGAACCTCAAATGTTCTTTTGTCAGATTTGCGATCGGTATTTCAAAGATTATTATTATTACAAAAATCATGTTCAAGAGCACTCGGAAGAGAAGGAAACCCTCACCTGCGCTGTTTGCAAGAAAGAGTATCAATCTCGTAGACGCTACAAAGTTCATTTGAAGCTTCACCTTGAGAATTGCCTAACTTGCGAGGTTTGTAATAAAAAGTTCACAAGCAACCGAAATTTCAAACTTCATATGGACAACCATGACGGAATCAAGCCGTACACCTGCGAACAGTGCGCCAAGTCTTTCATGAGTCTTAGTTATTATAAACTTCACCTGCAGTCACATGTTGATGGAAACATACACTCTTGTGATACCTGCGGGAAATCGTACATGAGTCACTTGACTCTCCGTAGGCATGTTAAAACTCATAGTCGCGTAAATGAGTGTTTTTGTGATATCTGCGGGAAGGCTTACAGTTGTAAGTCTTCGCTTGCAGTTCACGCAGCGACTCATCTAGATGAAAAACCATTCAAGTGTGAACAATGTCCCAAATCTTACACTCAACGGACCGCCCTCCGCGCCCATGTCGAAGCTTCCCACTCCAATGAGCCAAGTCCGTTTGCTTGTGAGATTTGTCAAAAAAAATTTTCATGTGTTGCTTCCCTCAAACGACATCACTTCACGCACTCAGAAATCAAGCCATACCAGTGCGACTTGTGCGATAAAAATTTTGTTCAAAGCGGGCAGTTAAGAGGTCATTTGGCCTCCGCACACGGAGCTCAAAGAGGAGAGTCAAAAAAATACCATTGCGAAATTTGTGACAAAACTTTTTCTAGGAAACAGTACCTTACATCGCATCAAGAGAATGTACACTCGTCAAATCACCGTTTGTACAAATGTAAAGACTGCGATAAAACGTACAAAACGAGACAAAATGCAATGAAACATATTCGCGCACATCATCCGGGTAAAGAAGCGCACTCTTTGCTGGTAGAAGATTACAAAAATGACAATAACAAAGATGAGGATATGATAGACTTAGATTTAAAAGATGCAGACAAGTTAGACGATGAGAAAGATGAGTCGATGGAGGAGCAGCTTAAAGGTGGAGAAGTGTCAGACTCATAGTATTCAGAAACTCGGTTCCTCTTATCTCTTTTTTGTGTTTTAAGGAATAAGACTAAGTCATATTTAGTTCTAATTGATTTTGTTTTGCGTCAGATTTGTTGTTAATTATGTACTAATGTGATACTTG
- Protein Sequence
- ITFR*RTRFIVVYNWNNLKLIGVTEEVNR*IEHNFYPRLNFFSFLIS*FLNLLQLL*SVEGLTLYQLICWIENSVCCSQFYPFFVCLWAVIISQILRYQLLEMYNYLFHYILNVYH*FARNQFSPK*VFVPDTLWNHCSSTQLFSRKTCQRSDQQ*LVL*AKTGKMACLEEPEIGMSQIKDEGDQNIDEVAQDGLFDKSTDEADNTTGPEMVLIKAELDAMSDVDSNASDSVPDEDSTFQNLSNETITSNSQILSSDNAENIKASYCHKCQTDFGSPKRLAKHLEFYVRQAPFACVNCHKAFLKDEILREHSRVHVAERMFRCKICPFSFDTDQELAQHLETHNVEEPQMFFCQICDRYFKDYYYYKNHVQEHSEEKETLTCAVCKKEYQSRRRYKVHLKLHLENCLTCEVCNKKFTSNRNFKLHMDNHDGIKPYTCEQCAKSFMSLSYYKLHLQSHVDGNIHSCDTCGKSYMSHLTLRRHVKTHSRVNECFCDICGKAYSCKSSLAVHAATHLDEKPFKCEQCPKSYTQRTALRAHVEASHSNEPSPFACEICQKKFSCVASLKRHHFTHSEIKPYQCDLCDKNFVQSGQLRGHLASAHGAQRGESKKYHCEICDKTFSRKQYLTSHQENVHSSNHRLYKCKDCDKTYKTRQNAMKHIRAHHPGKEAHSLLVEDYKNDNNKDEDMIDLDLKDADKLDDEKDESMEEQLKGGEVSDS*YSETRFLLSLFCVLRNKTKSYLVLIDFVLRQICC*LCTNVIL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -