Tvap004925.1
Basic Information
- Insect
- Trialeurodes vaporariorum
- Gene Symbol
- -
- Assembly
- GCA_011764245.1
- Location
- HIC:26133719-26153078[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.0027 0.19 12.3 0.9 1 23 780 803 780 803 0.93 2 14 1.9e-06 0.00013 22.3 1.8 1 23 811 834 811 834 0.96 3 14 0.011 0.77 10.4 1.8 1 23 840 862 840 862 0.88 4 14 0.024 1.6 9.4 0.5 3 23 870 890 868 890 0.95 5 14 7.1e-06 0.00048 20.4 2.6 1 23 895 917 895 917 0.99 6 14 0.034 2.3 8.9 1.9 2 23 927 949 927 949 0.95 7 14 0.00032 0.022 15.2 0.7 3 23 956 979 955 979 0.90 8 14 2e-05 0.0014 19.0 4.1 1 23 986 1009 986 1009 0.96 9 14 2e-05 0.0013 19.1 1.3 1 23 1021 1043 1021 1043 0.99 10 14 0.0017 0.11 13.0 5.4 1 23 1049 1072 1049 1072 0.95 11 14 7.2e-06 0.00049 20.4 1.7 1 23 1084 1106 1084 1106 0.96 12 14 0.006 0.4 11.2 3.6 1 23 1116 1138 1116 1138 0.97 13 14 0.009 0.61 10.7 8.6 1 23 1144 1166 1144 1166 0.98 14 14 0.00043 0.029 14.8 4.2 1 23 1172 1195 1172 1195 0.98
Sequence Information
- Coding Sequence
- ATGACACATTCAATCAGTGAAACTCTGCAGCTCATCGAAAAATTTTTACTGATCTTGAAGGAAGCTGGAATGCTGAAGTCCTACTATCTTAACTTTTGTTATTCAAGTTTCAAAAGTGATGACTCTTTTATTCCTACTTTTCAGCCTTTGATTGATAATTTAAAGGCAAGTATACGAACCTTATTCCTGAGACTGGATGTGTTTTTCAAGATTTGTAACAAATGGCAGAGTTTGCAAAATATTCAATATGAAGAAAAAGTGCACAATCATCTAATTTTAGACTATGAATCAAACCAAACCAGTTATCAATCAAGTTTTGATAAGAAATCTCCAGAACACTGCATGATAAATGATAAGGTTATCAATAATGTGATCAGTAGTTGTAGCCTTCCCAATCATCCTGTGATCAACAGCAATATAGAATTTAATGCTAGAAGTTCCAATAAGATAGACCATTGTTTGAAGAGCCATGATTCTATGAACAATGATAAAGTGCTTGAAAATGTTTGTTTTTCTGATGCACTCGGGCAAGTTAACTGCCAAGATTCAAATCAATCTGGCAGGAACAATTTGAATCCTTTCAACTCCTACAATGATGTGAATCAAAGTCAAGGTGTGTCAAATGACGATAGCTCTTCTTCCACAGAAAATGTTCATTTCCACTCAGAATTTAGCCAGTTAGATAGCTTGAACCAATCCCATCATATAAACTGCCAAGCATCTAACCCAACAGTAAGGAATAATTTAAATCGATATGAACCATACGACAGTGTAGATCACTCTCAAAATATCTCTGATGATAGCTCTTCTCCTCCAGGTAATGTCCATTATCATTCAGAGTTTAGTCAACTGGATCACGTTGATGGGACTGGTCATACTAGCTGTCGAAAATCAAATCAAGTATCAAGGAATAATTTGAATCCTTACAATTCTTATGACACTGTGGATGCAGGCAGAAACATATCAAATGATGACAGCTCCTCTTCTGAAAACGTTCATCTTCCTTTAGAGTATAACATAGAGTTAGGAAACTCAAACCAGCCCAATCATTTAAGTCGCCAAAAATCTAATAAATCCATACAGAATAATATAAATATCCACGATTCTTTTAACACTTCAAGTACCAATCAAAACATTTCTAACAATGAGACCTCATCTTTAGAATTCATTCATTTTTCAAGAGTATTTAGTCAGCTGGATAGCTTAAATCAGTCGGACCCTGTTGGTTGTCAAGAGTCAAATCAAACTTCAACAAATAATTTAAATTCGCTTAACTCTTTCGATACCTCCAACATCAACCAAAGTTCTTCCACCAATAATTTATCTTCCCTAGAACATGTTAATTTTCCCGCTGTGTATAGTCAGTTGGACAGCACAAACCACACTCGTCAAGTAAATTGTCAAAAATCAAATCAGTCAACTAGAACCGATGTACATCTACATAATTCGTATGATTGTACTAGCACAAATCAAAATGCCTCTGATAATGATAACTCATCTTTAGAACCTGCTCATTTCCCCGGTGTATATGCACAGCTAGAAAGTGTGAATCAGCTGAATGATGTAAGCTGTCAAGAATTGAGTCAATCAGCAAGGAACAATTTAAACCACCTAGACGCATTCGATAACTCAAGCACTAGTCAAAATTCCGGTAACAACGGTACCTCTCTTGAAAGTGTTCTTTTTCCCAGAGGCTATGGCCATTTGGATAGAGAAAGTCAAGCTAATATTAGCAATGGTAATGCTGCTTTGAATAATGTTCTAAGCTTGTCAAAAGAATTTGGTCAGATAGAAAGTTCAGTCTCGCAGAATCCATCTTGTATGCATGGTCATGAAAACAATCTTCTGGACAATGTTTCAAGCTTATCTAATACTCTTAGTTCGTCAGAAAATGTAAACAAGATTGAAAGTACCATAATTGGTAGGGGATCCATTCTTACGGAAGTGGTTCCCTGCAATCATGCTCAACAAGTCAATTCACAACTAGTTCAAGTCAATTCATCTGACCATACAGATTATACAGATGAAGCGTTGGAAATTAATGCTCTGGAACGTGAAGGAAGTTTTGGAAGAAATTTGAACTTCCCCTCTGCCAATCAGTCCACAGTAGACACGTCTATTCTAGATAGCTCTTCAGCAGATTTTACTTCTTTTTATGCCACTGAAAAGTCATCAGTCACAGAAAAACCGGAAACTCAATTGTATGTCATTAGCCTTGAAGAAAAGTCGGATACTTGTTTGTATAATAAGAGCATCCCTGAAGAAATACAAATAGAAGCAAAGGAACAGAAACTAACTGAACATTTTAGAGAACTAGGAGAAGGGCGAAAAAAATGTTTTGAATGTGTCCACTGCAGTCAATCTTTTTCCCGCTTGGAAAGTGTAACATCTCATCTTGCTGAAACTCACGAAATTCTTTCCAGTCATTTGTATTCATGTGATCAATGCGGGAAAACATTCTCCAAAAAATACTCACTACGGCTACACATTGAGTCTTTTCATGATGGTGTCAAACAGTTTGAGTGTCATATATGCTCTAAACGCTTCTCTCAAAAAGTAGTCAGGGACACGCACCTTGCCAGCCACACAGGTGTTTATCAGTATGGTTGCGATGAGTGTGGGAAAAGGTTTGCTGCCAAAAATAAATTAAAATTCCATTTGCTGAGTCATGAGGATCCTCAATTCAAGTGCGATGTATGCAATAAATTGTTCACCACCAACCAGTACCTTCAAAATCATCTGAAAACTCATGGGAGCACTGCACCTGAAGAAATTGAGGTTTGTGAATTATGCAGCGTCGTTTGCAAAAATCGGGAAGCATTGTTAAAGCATAAACGTTATAAACATCGCAAAGCGCTTAACTTCTGTGATTTCCCGGGTTGCACCAAGTCATTTGTAACTCAAACAATGTTGCAACGACATCAAGACAGACTTCACAATGTTAACAAAAAGATGTATCAATGTCAAGAGTGTGATAGGACCTTCTCACAAGAAAAAAGTTTGCAACATCATACAAAACAAAATCACACAATCGGATTATCTGAGGAGCAACTCAGACCATTCCAATGCTCTGTCTGTAACAAGCGCTATGCATTTCCAAATAAATTAAAGCTGCACATGATGACGCATACTCAGGAGCCGCAGCATTGCTGTAATCTTTGTACCAAGACATTCTATCGCTTAGACCTTCTGAAAATGCACATGGCCTCAAAACATTTCTATGCCGATCAGATGGGCTTCCCAAAATCTCACGTTTGTGATATTTGTGGTCAGAGTTTCTCTACCAAGTTCACTTTGAAAACGCATCAAGCATTACATAGTCAGAATAGTGAAGATACTTCATCTTTCGATTGTATGCATTGCAAGAAAGCTTTCAAAAGTAAACTGGCTCTTGATTATCATTTGAAGAAACATGAGGGAAAATTCAGCCATGAATGTAGATACTGCAGCAAGAAGTTTGTAAGGAAATGTCATCTAGATGATCATCTCCAGACTCACATGTCCGAAAGGAACTTCAAGTGTAATTTGTGTAAAGCAAGTTTCAAGAGGAACAAACATGTGAGAGAACATCTGAAACGAGTTCATCCAAACCACATTACTGTCGATACCCTTCTAGAGTCTATCACTAGTGAGAGCAATGATCAACAGAACTTACTGCCAGCTATTAAAGAAGAACTTAGAATCAGCCTAGCCACCCTTTAATCAAGCGTCTGACTGCGACTTGAGTATAATTTTTTTCAAAACTGAATCACCGCACAATTTTTTCAGGAAAATCTTTGTTTTGTAAAATAAAACTTTTTCCAAAATTTGCTGCGATGAAAGTTTTTTCATTTGCATGCAAAGCTTGGCAGCACTAATAAGACGGGCAAACAAACGAATTTGTGGGATTCAAATCATTCTGGTAACTGTTGCCTTTCAGTTGAGCAGACAGTAAAAATTTCCAAAAATAATCTGCCATCGTCCAATGATTAAATGAACGTTAATTTTAAAATGCAAATAAGTTGTTCGAAAATTATAGAAGTGAAAATGAAAGGCAGTGAATTGTTTGCAAAAGATCCCGCACAGTCTTCATGGCAACTGGTGGCTGACCTGTTGATGAGCTTGGACAGTTTGACTTGTTGTTCTCTTCATCATTCTAAAGAAGACACAGTCACTAATGTCCAGGTATTATGGATTAAACAAGCCGATTCGTTTGATTCCTTGCAAAGTTTGAGCTTAGAAAATTTGAAAACTTCTCATTTGATTCTTTG
- Protein Sequence
- MTHSISETLQLIEKFLLILKEAGMLKSYYLNFCYSSFKSDDSFIPTFQPLIDNLKASIRTLFLRLDVFFKICNKWQSLQNIQYEEKVHNHLILDYESNQTSYQSSFDKKSPEHCMINDKVINNVISSCSLPNHPVINSNIEFNARSSNKIDHCLKSHDSMNNDKVLENVCFSDALGQVNCQDSNQSGRNNLNPFNSYNDVNQSQGVSNDDSSSSTENVHFHSEFSQLDSLNQSHHINCQASNPTVRNNLNRYEPYDSVDHSQNISDDSSSPPGNVHYHSEFSQLDHVDGTGHTSCRKSNQVSRNNLNPYNSYDTVDAGRNISNDDSSSSENVHLPLEYNIELGNSNQPNHLSRQKSNKSIQNNINIHDSFNTSSTNQNISNNETSSLEFIHFSRVFSQLDSLNQSDPVGCQESNQTSTNNLNSLNSFDTSNINQSSSTNNLSSLEHVNFPAVYSQLDSTNHTRQVNCQKSNQSTRTDVHLHNSYDCTSTNQNASDNDNSSLEPAHFPGVYAQLESVNQLNDVSCQELSQSARNNLNHLDAFDNSSTSQNSGNNGTSLESVLFPRGYGHLDRESQANISNGNAALNNVLSLSKEFGQIESSVSQNPSCMHGHENNLLDNVSSLSNTLSSSENVNKIESTIIGRGSILTEVVPCNHAQQVNSQLVQVNSSDHTDYTDEALEINALEREGSFGRNLNFPSANQSTVDTSILDSSSADFTSFYATEKSSVTEKPETQLYVISLEEKSDTCLYNKSIPEEIQIEAKEQKLTEHFRELGEGRKKCFECVHCSQSFSRLESVTSHLAETHEILSSHLYSCDQCGKTFSKKYSLRLHIESFHDGVKQFECHICSKRFSQKVVRDTHLASHTGVYQYGCDECGKRFAAKNKLKFHLLSHEDPQFKCDVCNKLFTTNQYLQNHLKTHGSTAPEEIEVCELCSVVCKNREALLKHKRYKHRKALNFCDFPGCTKSFVTQTMLQRHQDRLHNVNKKMYQCQECDRTFSQEKSLQHHTKQNHTIGLSEEQLRPFQCSVCNKRYAFPNKLKLHMMTHTQEPQHCCNLCTKTFYRLDLLKMHMASKHFYADQMGFPKSHVCDICGQSFSTKFTLKTHQALHSQNSEDTSSFDCMHCKKAFKSKLALDYHLKKHEGKFSHECRYCSKKFVRKCHLDDHLQTHMSERNFKCNLCKASFKRNKHVREHLKRVHPNHITVDTLLESITSESNDQQNLLPAIKEELRISLATL*SSV*LRLEYNFFQN*ITAQFFQENLCFVK*NFFQNLLR*KFFHLHAKLGSTNKTGKQTNLWDSNHSGNCCLSVEQTVKISKNNLPSSND*MNVNFKMQISCSKIIEVKMKGSELFAKDPAQSSWQLVADLLMSLDSLTCCSLHHSKEDTVTNVQVLWIKQADSFDSLQSLSLENLKTSHLIL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -